Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

34072323 .. 34074781

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1254000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGCGAAGACGAAAAGAAGAGAGGAGTGTCAAGTGATCATCAGCATCACTATCCCCCTCCGCCACCCGAGTACGGAACTTTCCAAGGAGTAGCCAACTACCCACCACCGCCTCCGCCGACAGGATTCCCTCAGCCGGCGCCGCCGCCGGGAGCCGCTAACCCTTCAGCTCCTCCTCATCCTGAAAGCTACGCTTATGGATATCAAACCGTTCCTGGTTATGCGGTTGCTGAAGGGCAACCTGTAAGAGAGCATCGCCTTCGTTGCTGTGGTTGTGGACTTGGCTGGTGCTTGTTTATTATCGGTTTCTTCCTTGCTACCGTCCCCTGGTATGTTGGTGCAATTATCCTACTTTGCGCTAGGAATAGGATGGACCCCCGAGAGAAACCAGGATATTATGCTTGCACAGTTGGCGCTCTTCTTGCAACAATTGCTATTGTACTTGGTGCAACAAAGGGAGGTCATGGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.84

Weight (kDa)

7.65

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AciI	CCGC	7 cut(s)	62, 110, 116, 143, 146, 156, 224
AcuI	CTGAAG	2 cut(s)	150, 252
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	74, 441
AfiI	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 327
AjnI	CCWGG	3 cut(s)	214, 326, 388
AluBI	AGCT	2 cut(s)	170, 189
AluI	AGCT	2 cut(s)	170, 189
Ama87I	CYCGRG	2 cut(s)	68, 378
AspLEI	GCGC	3 cut(s)	142, 359, 416
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	150
AvaI	CYCGRG	2 cut(s)	68, 378
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	3 cut(s)	216, 328, 390
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	143, 417
BisI	GCNGC	3 cut(s)	143, 146, 156
BlsI	GCNGC	3 cut(s)	144, 147, 157
Bme1390I	CCNGG	4 cut(s)	150, 216, 328, 390
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	68, 378
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	141, 154, 375
BmrFI	CCNGG	4 cut(s)	150, 216, 328, 390
BmsI	GCATC	2 cut(s)	55, 262
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	85, 326
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 327
Bse118I	RCCGGY	1 cut(s)	136
BseBI	CCWGG	3 cut(s)	216, 328, 390
BseDI	CCNNGG	2 cut(s)	85, 326
BseGI	GGATG	2 cut(s)	178, 375
BseLI	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 327
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	3 cut(s)	39, 162, 165
BshNI	GGYRCC	1 cut(s)	139
BsiHKCI	CYCGRG	2 cut(s)	68, 378
BsiSI	CCGG	2 cut(s)	137, 149
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 327
BsmFI	GGGAC	1 cut(s)	308
BsoBI	CYCGRG	2 cut(s)	68, 378
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	7 cut(s)	62, 110, 116, 143, 146, 156, 224
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	141, 154, 375
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	85, 326
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	3 cut(s)	216, 328, 390
Bst4CI	ACNGT	3 cut(s)	211, 322, 409
Bst6I	CTCTTC	2 cut(s)	14, 423
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	138, 403
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	178, 375
BstH2I	RGCGCY	2 cut(s)	143, 417
BstHHI	GCGC	3 cut(s)	142, 359, 416
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 264, 411, 422, 431
BstNI	CCWGG	3 cut(s)	216, 328, 390
BstSCI	CCNGG	4 cut(s)	148, 214, 326, 388
BstV2I	GAAGAC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	178, 375
Cac8I	GCNNGC	2 cut(s)	138, 403
CfoI	GCGC	3 cut(s)	142, 359, 416
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	73, 440
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	7 cut(s)	95, 136, 155, 170, 189, 285, 468
CviKI_1	RGCY	7 cut(s)	95, 136, 155, 170, 189, 285, 468
CviQI	GTAC	2 cut(s)	73, 440
DdeI	CTNAG	1 cut(s)	132
DinI	GGCGCC	1 cut(s)	141
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	14, 423
EarI	CTCTTC	2 cut(s)	14, 423
EciI	GGCGGA	2 cut(s)	51, 105
Eco130I	CCWWGG	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	150, 252
Eco88I	CYCGRG	2 cut(s)	68, 378
EcoRII	CCWGG	3 cut(s)	214, 326, 388
EcoRV	GATATC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	467
FaiI	YATR	5 cut(s)	198, 222, 333, 399, 465
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	143, 146, 156
FokI	GGATG	2 cut(s)	165, 382
Fsp4HI	GCNGC	3 cut(s)	143, 146, 156
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	3 cut(s)	141, 358, 415
GluI	GCNGC	3 cut(s)	143, 146, 156
HaeII	RGCGCY	2 cut(s)	143, 417
HapII	CCGG	2 cut(s)	137, 149
HhaI	GCGC	3 cut(s)	142, 359, 416
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	467
Hin6I	GCGC	3 cut(s)	140, 357, 414
HinP1I	GCGC	3 cut(s)	140, 357, 414
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	2 cut(s)	137, 149
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	174, 227, 269
HpyCH4III	ACNGT	3 cut(s)	211, 322, 409
HpyCH4V	TGCA	4 cut(s)	341, 405, 425, 449
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 264, 411, 422, 431
HpyF3I	CTNAG	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	467
HspAI	GCGC	3 cut(s)	140, 357, 414
KasI	GGCGCC	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	2 cut(s)	152, 175
LweI	GCATC	2 cut(s)	55, 262
MaeI	CTAG	1 cut(s)	360
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	4 cut(s)	20, 31, 301, 410
MfeI	CAATTG	1 cut(s)	429
MluCI	AATT	2 cut(s)	342, 429
Mly113I	GGCGCC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	17, 69, 123, 141, 183, 186, 452
MroNI	GCCGGC	1 cut(s)	136
MspI	CCGG	2 cut(s)	137, 149
MspR9I	CCNGG	4 cut(s)	150, 216, 328, 390
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	216, 328, 390
MwoI	GCNNNNNNNGC	5 cut(s)	142, 264, 411, 422, 431
NaeI	GCCGGC	1 cut(s)	138
NarI	GGCGCC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	3 cut(s)	141, 154, 375
PciSI	GCTCTTC	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	144, 147, 157
PluTI	GGCGCC	1 cut(s)	143
Psp6I	CCWGG	3 cut(s)	214, 326, 388
PspGI	CCWGG	3 cut(s)	214, 326, 388
PspN4I	GGNNCC	3 cut(s)	141, 154, 375
PspPI	GGNCC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	74, 441
RsaNI	GTAC	2 cut(s)	73, 440
SapI	GCTCTTC	1 cut(s)	423
SatI	GCNGC	3 cut(s)	143, 146, 156
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	4 cut(s)	150, 216, 328, 390
SetI	ASST	4 cut(s)	172, 191, 244, 463
SfaNI	GCATC	2 cut(s)	55, 262
SfoI	GGCGCC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	342, 429
SsiI	CCGC	7 cut(s)	62, 110, 116, 143, 146, 156, 224
SspDI	GGCGCC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	148, 214, 326, 388
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	3 cut(s)	211, 322, 409
TasI	AATT	2 cut(s)	342, 429
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	3 cut(s)	145, 148, 158
TfiI	GAWTC	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	373
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.