AT1G17145

protein binding, zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007122
Physical Location & Seq
Reverse (-)
5860078 .. 5862890
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17145.1

Sequence Viewer

Length: 1008 bp
ATGGGTAATAAGCTGGGAAGGAAGAGACAGATTGTGGACGAAAGATACACAAAGCCACAACAAGGTTTATACATGAGCAAAGATGTTGACATTAAAAAGCTTAAGAAACTCATCTTAGAGTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCCCCTCCTCCCATCATGATCTTGAAGAATGTCCTATTTGCTTTCTGTATTATCCGAGTCTTAATAGGTCAAGATGTTGTATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACCTACTCAATGCCCTTTTTGCAAAACATCCAATTATGCTGTCGAGTATCGTGGAGGGAAAACTAAAGAGGAGAAGAGCTTTGAACAAATTGAAGAGCAGCGAGTTATAGAAGCCAAAATAAGGATGAGGCAGAAGGAAGTTGAAGATGATGAAGAAAGAATGCAGAAACGTCTGGAGTCATATTCTTCTAGTTCTAGCACTAGTGCAGCGACTCTTGATACAGAGTATGGTTCTGCTGCAGAGGATGATGAGGAAATTGTTTCATCTCAAGAATCATGTCTTCCATCTCACCACCCTCAGGTTACAAGGGACGGTCAGTTTGACTTTGATCTTGAAGATATAATGGTCATGGAAGCAATATGGCTTTCGATGCAGGAACCAGGAATTCAGAGAAACACATCACCTGATGATATTTCAGAAAAAGATCGTAATGAGGAACCATCAACTCCGTCATCATCATCTCCATCAGGTGGGCTAGCTTGTGCAATTGCTGTTCTTGCCGAACGTCAGCAAATGGTTGGCGTATCTTCTTCGAATCAAAACGTTAACCTTGCATCACAAAACCTTGTTCCAGACAATGGTAACAACAGTCATTACAATGCCATAGAACAGGATAGTAACCATTACCTTCAAGGAGCAGGAATCAGCTATACAAGATCAGATATGACTGATGATAGCGGCGGTGAGACTTCCAGGGAAGTTACATGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.7

Weight (kDa)

4.86

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 764, 872
AciI CCGC 3 cut(s) 268, 972, 975
AclI AACGTT 1 cut(s) 837
AcsI RAATTY 1 cut(s) 678
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 5 cut(s) 62, 414, 592, 764, 872
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 7 cut(s) 152, 182, 377, 386, 437, 629, 926
AhlI ACTAGT 1 cut(s) 494
AjnI CCWGG 3 cut(s) 142, 673, 986
AluBI AGCT 7 cut(s) 13, 100, 127, 290, 372, 773, 942
AluI AGCT 7 cut(s) 13, 100, 127, 290, 372, 773, 942
Alw26I GTCTC 2 cut(s) 19, 974
ApeKI GCWGC 3 cut(s) 391, 500, 530
ApoI RAATTY 1 cut(s) 678
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 1 cut(s) 261
AsuHPI GGTGA 3 cut(s) 575, 687, 989
AsuII TTCGAA 1 cut(s) 827
AsuNHI GCTAGC 1 cut(s) 769
AxyI CCTNAGG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 566
BbvI GCAGC 3 cut(s) 403, 512, 517
BccI CCATC 4 cut(s) 177, 586, 742, 766
BciT130I CCWGG 3 cut(s) 144, 675, 988
BcoDI GTCTC 2 cut(s) 19, 974
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 4 cut(s) 483, 489, 495, 770
BfmI CTRYAG 1 cut(s) 531
BfrI CTTAAG 1 cut(s) 101
BisI GCNGC 4 cut(s) 392, 501, 531, 973
BlsI GCNGC 4 cut(s) 393, 502, 532, 974
Bme1390I CCNGG 3 cut(s) 144, 675, 988
BmiI GGNNCC 2 cut(s) 672, 732
BmrFI CCNGG 3 cut(s) 144, 675, 988
BmsI GCATC 2 cut(s) 654, 857
BmtI GCTAGC 1 cut(s) 773
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 488
Bpu14I TTCGAA 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 987
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 414, 592, 764, 872
Bse21I CCTNAGG 1 cut(s) 591
BseBI CCWGG 3 cut(s) 144, 675, 988
BseDI CCNNGG 1 cut(s) 987
BseGI GGATG 4 cut(s) 276, 320, 423, 544
BseLI CCNNNNNNNGG 5 cut(s) 62, 414, 592, 764, 872
BseMII CTCAG 1 cut(s) 605
BseRI GAGGAG 2 cut(s) 154, 377
BseXI GCAGC 3 cut(s) 403, 512, 517
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 5 cut(s) 62, 414, 592, 764, 872
BsmAI GTCTC 2 cut(s) 19, 974
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 2 cut(s) 263, 459
Bsp119I TTCGAA 1 cut(s) 827
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 4 cut(s) 175, 622, 718, 950
BspACI CCGC 3 cut(s) 268, 972, 975
BspCNI CTCAG 1 cut(s) 604
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 672, 732
BspMAI CTGCAG 1 cut(s) 535
BspOI GCTAGC 1 cut(s) 773
BspQI GCTCTTC 2 cut(s) 362, 381
BspT104I TTCGAA 1 cut(s) 827
BspTI CTTAAG 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 987
BssMI GATC 4 cut(s) 175, 622, 718, 950
Bst2UI CCWGG 3 cut(s) 144, 675, 988
Bst4CI ACNGT 2 cut(s) 608, 884
Bst6I CTCTTC 4 cut(s) 17, 269, 362, 381
BstAFI CTTAAG 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 129, 771
BstDEI CTNAG 3 cut(s) 115, 123, 591
BstF5I GGATG 4 cut(s) 276, 320, 423, 544
BstKTI GATC 4 cut(s) 178, 625, 721, 953
BstMAI GTCTC 2 cut(s) 19, 974
BstMBI GATC 4 cut(s) 175, 622, 718, 950
BstMWI GCNNNNNNNGC 3 cut(s) 312, 664, 791
BstNI CCWGG 3 cut(s) 144, 675, 988
BstSCI CCNGG 3 cut(s) 142, 673, 986
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 3 cut(s) 403, 512, 517
BstV2I GAAGAC 1 cut(s) 566
Bsu36I CCTNAGG 1 cut(s) 591
BtsCI GGATG 4 cut(s) 276, 320, 423, 544
Cac8I GCNNGC 2 cut(s) 129, 771
CciI TCATGA 1 cut(s) 172
Csp6I GTAC 1 cut(s) 252
CviAII CATG 5 cut(s) 73, 173, 570, 643, 999
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 115, 123, 591
DpnI GATC 4 cut(s) 177, 624, 720, 952
DpnII GATC 4 cut(s) 175, 622, 718, 950
Eam1104I CTCTTC 4 cut(s) 17, 269, 362, 381
EarI CTCTTC 4 cut(s) 17, 269, 362, 381
Eco81I CCTNAGG 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 3 cut(s) 142, 673, 986
FaeI CATG 5 cut(s) 76, 176, 573, 646, 1002
FaqI GGGAC 1 cut(s) 617
FatI CATG 5 cut(s) 72, 172, 569, 642, 998
Fnu4HI GCNGC 4 cut(s) 392, 501, 531, 973
FokI GGATG 4 cut(s) 283, 307, 430, 551
Fsp4HI GCNGC 4 cut(s) 392, 501, 531, 973
FspBI CTAG 4 cut(s) 483, 489, 495, 770
GluI GCNGC 4 cut(s) 392, 501, 531, 973
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 488
Hin1II CATG 5 cut(s) 76, 176, 573, 646, 1002
HincII GTYRAC 2 cut(s) 88, 841
HindII GTYRAC 2 cut(s) 88, 841
HindIII AAGCTT 2 cut(s) 98, 125
HinfI GANTC 8 cut(s) 119, 214, 277, 470, 505, 566, 829, 936
HpaI GTTAAC 1 cut(s) 841
HphI GGTGA 3 cut(s) 575, 687, 989
Hpy166II GTNNAC 3 cut(s) 37, 88, 841
Hpy188I TCNGA 4 cut(s) 213, 684, 712, 955
Hpy188III TCNNGA 9 cut(s) 149, 173, 179, 228, 467, 509, 563, 626, 866
Hpy8I GTNNAC 3 cut(s) 37, 88, 841
HpyAV CCTTC 3 cut(s) 12, 421, 932
HpyCH4III ACNGT 2 cut(s) 608, 884
HpyCH4IV ACGT 3 cut(s) 463, 799, 837
HpyCH4V TGCA 7 cut(s) 315, 457, 500, 533, 667, 779, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 664, 791
HpyF3I CTNAG 3 cut(s) 115, 123, 591
HpySE526I ACGT 3 cut(s) 463, 799, 837
Hsp92II CATG 5 cut(s) 76, 176, 573, 646, 1002
KspAI GTTAAC 1 cut(s) 841
Kzo9I GATC 4 cut(s) 175, 622, 718, 950
LguI GCTCTTC 2 cut(s) 362, 381
LmnI GCTCC 2 cut(s) 136, 929
Lsp1109I GCAGC 3 cut(s) 403, 512, 517
LweI GCATC 2 cut(s) 654, 857
MaeI CTAG 4 cut(s) 483, 489, 495, 770
MaeII ACGT 3 cut(s) 463, 799, 837
MaeIII GTNAC 4 cut(s) 595, 875, 911, 994
MalI GATC 4 cut(s) 177, 624, 720, 952
MboI GATC 4 cut(s) 175, 622, 718, 950
MfeI CAATTG 1 cut(s) 780
MluCI AATT 6 cut(s) 283, 325, 381, 549, 678, 780
MlyI GAGTC 5 cut(s) 128, 223, 286, 479, 499
MnlI CCTC 9 cut(s) 172, 175, 341, 355, 414, 529, 538, 600, 721
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 4 cut(s) 93, 102, 219, 840
MslI CAYNNNNRTG 1 cut(s) 891
MspCI CTTAAG 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 144, 675, 988
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 2 cut(s) 263, 459
MvaI CCWGG 3 cut(s) 144, 675, 988
MwoI GCNNNNNNNGC 3 cut(s) 312, 664, 791
NdeII GATC 4 cut(s) 175, 622, 718, 950
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 5 cut(s) 76, 176, 573, 646, 1002
NlaIV GGNNCC 2 cut(s) 672, 732
NspV TTCGAA 1 cut(s) 827
PagI TCATGA 1 cut(s) 172
PciSI GCTCTTC 2 cut(s) 362, 381
PctI GAATGC 2 cut(s) 263, 459
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 566, 829, 936
PflMI CCANNNNNTGG 2 cut(s) 764, 872
PkrI GCNGC 4 cut(s) 393, 502, 532, 974
PleI GAGTC 5 cut(s) 127, 222, 285, 478, 499
PpsI GAGTC 5 cut(s) 127, 222, 285, 478, 499
Psp1406I AACGTT 1 cut(s) 837
Psp6I CCWGG 3 cut(s) 142, 673, 986
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 3 cut(s) 142, 673, 986
PspN4I GGNNCC 2 cut(s) 672, 732
PstI CTGCAG 1 cut(s) 535
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 891
SapI GCTCTTC 2 cut(s) 362, 381
SaqAI TTAA 4 cut(s) 93, 102, 219, 840
SatI GCNGC 4 cut(s) 392, 501, 531, 973
Sau3AI GATC 4 cut(s) 175, 622, 718, 950
SchI GAGTC 5 cut(s) 128, 223, 286, 479, 499
ScrFI CCNGG 3 cut(s) 144, 675, 988
SfaNI GCATC 2 cut(s) 654, 857
SfcI CTRYAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 827
SmiMI CAYNNNNRTG 1 cut(s) 891
SmlI CTYRAG 2 cut(s) 101, 561
SmoI CTYRAG 2 cut(s) 101, 561
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 6 cut(s) 283, 325, 381, 549, 678, 780
SsiI CCGC 3 cut(s) 268, 972, 975
SspMI CTAG 4 cut(s) 483, 489, 495, 770
StyD4I CCNGG 3 cut(s) 142, 673, 986
TaaI ACNGT 2 cut(s) 608, 884
TaiI ACGT 3 cut(s) 466, 802, 840
TaqI TCGA 3 cut(s) 336, 662, 827
TasI AATT 6 cut(s) 283, 325, 381, 549, 678, 780
TatI WGTACW 1 cut(s) 251
TauI GCSGC 1 cut(s) 975
TfiI GAWTC 3 cut(s) 566, 829, 936
Tru1I TTAA 4 cut(s) 93, 102, 219, 840
Tru9I TTAA 4 cut(s) 93, 102, 219, 840
TseI GCWGC 3 cut(s) 391, 500, 530
TspDTI ATGAA 4 cut(s) 254, 287, 459, 546
TspGWI ACGGA 1 cut(s) 732
Van91I CCANNNNNTGG 2 cut(s) 764, 872
Vha464I CTTAAG 1 cut(s) 101
XapI RAATTY 1 cut(s) 678
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 4 cut(s) 483, 489, 495, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.