Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013615.1

Orthogroup ID

OG0007122

Physical Location & Seq

Genomic Coordinates Forward (+)

8243 .. 16326

Gene Structure 8084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013615.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgataagggctgtggtgcactctctgtttgttgcggttttaggtttagtgtacgggattgcgaggttttttctgtttagttggaaatggtggctattcaattcgaaacatgttaagttggtaactgtgagaaagtggtctcgtgttcttgttattgtggttgatttgtttaagaaagtgaagagaagaagagaaccatattggatgggtaataaactcggaaaaaggagacaggtgattgatgagaagtatacaaggcctcagggtctataccaccataaagatgtggatcataagaaactcaggaagctcatacttgaatctaagcttgctccatgctatcctggacttgaagactgcattcgggatcttgaagaatgcccaatttgctttttgttttatccaagtctcaacagatcaagatgttgcatgaaaggcatttgtacagagtgttttttgcagatgaaagtgcccaattcaactcgtcctacgcagtgccctttctgcaaaaccaccaattatgctgtggagtttcggggtgtaaaatctaaggaggagaagggccaggaacaaattgaagaacaacgagtcattgaagcaaaaattagaatgcgacagcaagaacttcaggatgaagaggaaagaatgcaaaatagacaactaaattcttctagcagaaacatggcaccaatcggggatgaatacagctctgtaactgttccatcttccacttatcctgcggaaggagaggaagtaatttcttctcaggattcatgtgctacagtgtttagaccaactccacctccacctccgggagcatacagaagcacgctaggtgctgtttatgagggacatagcaaaagtgagaataagcctcgaggcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

34.29

Weight (kDa)

9.4

Isoelectric Point (pI)

64.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17145 AT1G17145 AT1G78420 AT1G78420
fragaria_vesca	FvH4_3g16610
malus_domestica	MD05G1208500.v1.1 MD10G1195000.v1.1
prunus_persica	Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1
pyrus_communis	pycom05g19440 pycom10g16870
rosa_chinensis	RchiOBHm_Chr5g0027751
rosa_laevigata	RLG00000033040
rosa_multiflora	Rmu_sc0013615.1_g000003 Rmu_sc0039701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051860
rosa_rugosa	Rorug05G0100700 Rorug05G0100800 Rorug05G0100900
rosa_samantha	Rh5AG195000 Rh5BG193300 Rh5CG213500 Rh5DG195300
rosa_wichuraiana	Rw5G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	876
AccB1I	GGYRCC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	2 cut(s)	35, 740
AclWI	GGATC	2 cut(s)	297, 375
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	2 cut(s)	53, 445
AfiI	CCNNNNNNNGG	2 cut(s)	743, 812
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	7 cut(s)	100, 320, 353, 374, 480, 578, 596
AjnI	CCWGG	2 cut(s)	343, 564
AluBI	AGCT	3 cut(s)	310, 328, 708
AluI	AGCT	3 cut(s)	310, 328, 708
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	3 cut(s)	144, 223, 413
Alw44I	GTGCAC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	297, 375
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	2 cut(s)	257, 562
ApaLI	GTGCAC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	876
AxyI	CCTNAGG	1 cut(s)	261
BaeGI	GKGCMC	3 cut(s)	21, 474, 500
BanI	GGYRCC	1 cut(s)	685
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	2 cut(s)	199, 730
BciT130I	CCWGG	2 cut(s)	345, 566
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	3 cut(s)	144, 223, 413
BfaI	CTAG	2 cut(s)	672, 833
BfmI	CTRYAG	1 cut(s)	780
Bme1390I	CCNGG	3 cut(s)	345, 566, 813
BmeT110I	CYCGRG	1 cut(s)	876
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	3 cut(s)	345, 566, 813
BpiI	GAAGAC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	813
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	4 cut(s)	738, 768, 787, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	743, 812
Bse21I	CCTNAGG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	345, 566
BseGI	GGATG	3 cut(s)	210, 637, 703
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	743, 812
BseMII	CTCAG	3 cut(s)	275, 316, 779
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	3 cut(s)	21, 474, 500
BshFI	GGCC	2 cut(s)	259, 564
BshNI	GGYRCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	812
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	2 cut(s)	743, 812
BsmAI	GTCTC	3 cut(s)	144, 223, 413
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	4 cut(s)	360, 383, 615, 651
BsnI	GGCC	2 cut(s)	259, 564
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	876
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	21, 474, 500
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	289, 367, 416
BspACI	CCGC	2 cut(s)	35, 740
BspANI	GGCC	2 cut(s)	259, 564
BspCNI	CTCAG	3 cut(s)	274, 315, 778
BspLI	GGNNCC	1 cut(s)	687
BspPI	GGATC	2 cut(s)	297, 375
BspT104I	TTCGAA	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	443
BssMI	GATC	3 cut(s)	289, 367, 416
BssNAI	GTATAC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	345, 566
Bst4CI	ACNGT	3 cut(s)	127, 718, 784
Bst6I	CTCTTC	3 cut(s)	176, 184, 630
BstAUI	TGTACA	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	330, 830
BstDEI	CTNAG	5 cut(s)	261, 302, 324, 549, 765
BstENI	CCTNNNNNAGG	1 cut(s)	741
BstF5I	GGATG	3 cut(s)	210, 637, 703
BstKTI	GATC	3 cut(s)	292, 370, 419
BstMAI	GTCTC	3 cut(s)	144, 223, 413
BstMBI	GATC	3 cut(s)	289, 367, 416
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 435, 504
BstNI	CCWGG	2 cut(s)	345, 566
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	343, 564, 811
BstSFI	CTRYAG	1 cut(s)	780
BstSLI	GKGCMC	3 cut(s)	21, 474, 500
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	259, 564
BtsCI	GGATG	3 cut(s)	210, 637, 703
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	500, 789
Cac8I	GCNNGC	2 cut(s)	330, 830
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	52, 444
CviAII	CATG	5 cut(s)	110, 336, 430, 682, 774
CviJI	RGCY	9 cut(s)	11, 94, 259, 310, 328, 564, 708, 874, 882
CviKI_1	RGCY	9 cut(s)	11, 94, 259, 310, 328, 564, 708, 874, 882
CviQI	GTAC	2 cut(s)	52, 444
DdeI	CTNAG	5 cut(s)	261, 302, 324, 549, 765
DpnI	GATC	3 cut(s)	291, 369, 418
DpnII	GATC	3 cut(s)	289, 367, 416
Eam1104I	CTCTTC	3 cut(s)	176, 184, 630
EarI	CTCTTC	3 cut(s)	176, 184, 630
Eco147I	AGGCCT	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	876
EcoNI	CCTNNNNNAGG	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	343, 564
FaeI	CATG	5 cut(s)	113, 339, 433, 685, 777
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	5 cut(s)	109, 335, 429, 681, 773
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	3 cut(s)	217, 644, 710
FspBI	CTAG	2 cut(s)	672, 833
HaeIII	GGCC	2 cut(s)	259, 564
HapII	CCGG	1 cut(s)	812
Hin1II	CATG	5 cut(s)	113, 339, 433, 685, 777
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	320, 588, 770
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	19, 52, 252
Hpy188I	TCNGA	2 cut(s)	221, 887
Hpy188III	TCNNGA	6 cut(s)	304, 365, 371, 420, 629, 767
Hpy8I	GTNNAC	3 cut(s)	19, 52, 252
HpyAV	CCTTC	2 cut(s)	553, 737
HpyCH4III	ACNGT	3 cut(s)	127, 718, 784
HpyCH4V	TGCA	6 cut(s)	19, 360, 429, 460, 507, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 435, 504
HpyF3I	CTNAG	5 cut(s)	261, 302, 324, 549, 765
Hsp92II	CATG	5 cut(s)	113, 339, 433, 685, 777
Kzo9I	GATC	3 cut(s)	289, 367, 416
LmnI	GCTCC	2 cut(s)	337, 815
MaeI	CTAG	2 cut(s)	672, 833
MaeIII	GTNAC	2 cut(s)	121, 712
MalI	GATC	3 cut(s)	291, 369, 418
MboI	GATC	3 cut(s)	289, 367, 416
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	3 cut(s)	21, 474, 500
MluCI	AATT	8 cut(s)	100, 384, 475, 517, 573, 603, 664, 756
MlyI	GAGTC	1 cut(s)	597
MmeI	TCCRAC	1 cut(s)	62
MseI	TTAA	2 cut(s)	114, 171
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	1 cut(s)	812
MspR9I	CCNGG	3 cut(s)	345, 566, 813
Mva1269I	GAATGC	4 cut(s)	360, 383, 615, 651
MvaI	CCWGG	2 cut(s)	345, 566
MwoI	GCNNNNNNNGC	3 cut(s)	387, 435, 504
NciI	CCSGG	1 cut(s)	813
NdeII	GATC	3 cut(s)	289, 367, 416
NlaIII	CATG	5 cut(s)	113, 339, 433, 685, 777
NlaIV	GGNNCC	1 cut(s)	687
NspI	RCATGY	1 cut(s)	113
NspV	TTCGAA	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	259
PciI	ACATGT	1 cut(s)	109
PctI	GAATGC	4 cut(s)	360, 383, 615, 651
PfeI	GAWTC	2 cut(s)	320, 770
PfoI	TCCNGGA	2 cut(s)	343, 811
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PscI	ACATGT	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	343, 564
PspGI	CCWGG	2 cut(s)	343, 564
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	562
PspXI	VCTCGAGB	1 cut(s)	876
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	53, 445
RsaNI	GTAC	2 cut(s)	52, 444
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	114, 171
Sau3AI	GATC	3 cut(s)	289, 367, 416
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	1 cut(s)	597
ScrFI	CCNGG	3 cut(s)	345, 566, 813
SduI	GDGCHC	3 cut(s)	21, 474, 500
SetI	ASST	9 cut(s)	46, 68, 237, 312, 330, 710, 805, 811, 838
SfcI	CTRYAG	1 cut(s)	780
Sfr274I	CTCGAG	1 cut(s)	876
SfuI	TTCGAA	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
Sse9I	AATT	8 cut(s)	100, 384, 475, 517, 573, 603, 664, 756
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	35, 740
SspMI	CTAG	2 cut(s)	672, 833
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	343, 564, 811
TaaI	ACNGT	3 cut(s)	127, 718, 784
TaqI	TCGA	2 cut(s)	104, 877
TasI	AATT	8 cut(s)	100, 384, 475, 517, 573, 603, 664, 756
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	320, 770
Tru1I	TTAA	2 cut(s)	114, 171
Tru9I	TTAA	2 cut(s)	114, 171
TscAI	CASTG	2 cut(s)	500, 789
TspDTI	ATGAA	5 cut(s)	446, 479, 648, 714, 762
TspRI	CASTG	2 cut(s)	500, 789
VneI	GTGCAC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	741
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	876
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	2 cut(s)	672, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.