Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007122

Physical Location & Seq

Genomic Coordinates Reverse (-)

22721150 .. 22726102

Gene Structure 4953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTGCACAGTGTTTAGACCAACTCCACCTCCACCTCCGGGAGCATACAGGGAGGATGAACTTGATCTGGATCTTGACGATATAATGCTCATGGAAGCAATTTGGCTTTCTATTCAGGAGAATGGGAAACATAAGGCTCCAACTTATGTTGATGCTGCTCGATCTGAACAATTTGTCACAAGACAAAGCTATGACTCATCAGCCATTATACCTTCAGTTTCCGGGTCATCATCATCCCCATCTGGGGGTCTTGCTTGTGCAATAGCTGCCCTTGCAGAACGGCAACAAACGAGTGGGGAATCCTCCATTGATCCTGGTGGCAATAATGTATCGACTTTTAATATGGTTCCAGGCACTAGCAGGTTTTACAACAGGGTGGATGTAGAATCTGAGAATTATCAGCCTGCAGTTAGCCTTTCTGAATTGTCAATCGATCATGGGACATCATCGACTCAAGATGAGAGAGAATGGAATGGTGAGACAACGCGGTCAAGTTATGCAAGCTCTGACACAACCGAAGATGCTGGCACTACTTCTGCATTACCGACCTCGGATGAGATTGAGGGTGACCTTCAAAATGCCCCAGGCCACATTGTTCCTGAGAGTTTTGAGGAGCAGATGATGCTGGCCATGGCTGTTTCTCTGGCTGAGGCGAGAGCTGTGACTAGTGGACCTGGAGTTTCATGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.59

Weight (kDa)

4.16

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17145 AT1G17145 AT1G78420 AT1G78420
fragaria_vesca	FvH4_3g16610
malus_domestica	MD05G1208500.v1.1 MD10G1195000.v1.1
prunus_persica	Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1
pyrus_communis	pycom05g19440 pycom10g16870
rosa_chinensis	RchiOBHm_Chr5g0027751
rosa_laevigata	RLG00000033040
rosa_multiflora	Rmu_sc0013615.1_g000003 Rmu_sc0039701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051860
rosa_rugosa	Rorug05G0100700 Rorug05G0100800 Rorug05G0100900
rosa_samantha	Rh5AG195000 Rh5BG193300 Rh5CG213500 Rh5DG195300
rosa_wichuraiana	Rw5G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	351
AccII	CGCG	1 cut(s)	487
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	78, 305
AcoI	YGGCCR	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	198
AfiI	CCNNNNNNNGG	4 cut(s)	38, 243, 244, 245
AgsI	TTSAA	1 cut(s)	575
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	4 cut(s)	313, 349, 583, 673
AluBI	AGCT	4 cut(s)	189, 266, 504, 659
AluI	AGCT	4 cut(s)	189, 266, 504, 659
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	473
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	78, 305
AoxI	GGCC	2 cut(s)	586, 627
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	155, 266
AspS9I	GGNCC	1 cut(s)	671
AsuC2I	CCSGG	2 cut(s)	39, 223
AsuHPI	GGTGA	2 cut(s)	488, 578
AvaII	GGWCC	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	142, 253
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	4 cut(s)	315, 351, 585, 675
BcnI	CCSGG	2 cut(s)	39, 223
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	2 cut(s)	357, 666
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	2 cut(s)	156, 267
BlsI	GCNGC	2 cut(s)	157, 268
Bme1390I	CCNGG	6 cut(s)	39, 223, 315, 351, 585, 675
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	2 cut(s)	138, 348
BmrFI	CCNGG	6 cut(s)	39, 223, 315, 351, 585, 675
BmsI	GCATC	3 cut(s)	142, 511, 612
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	438
BpuMI	CCSGG	2 cut(s)	39, 223
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	549, 583, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 243, 244, 245
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	4 cut(s)	315, 351, 585, 675
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	549, 583, 630
BseGI	GGATG	4 cut(s)	61, 233, 385, 559
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	4 cut(s)	38, 243, 244, 245
BseMII	CTCAG	3 cut(s)	381, 591, 639
BseRI	GAGGAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	142, 253
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	2 cut(s)	588, 629
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	38, 222
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	4 cut(s)	38, 243, 244, 245
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	588, 629
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	64, 70, 161, 310, 433
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	1 cut(s)	487
BspANI	GGCC	2 cut(s)	588, 629
BspCNI	CTCAG	3 cut(s)	382, 592, 640
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	138, 348
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	78, 305
BssECI	CCNNGG	3 cut(s)	549, 583, 630
BssMI	GATC	5 cut(s)	64, 70, 161, 310, 433
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	4 cut(s)	315, 351, 585, 675
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	2 cut(s)	266, 622
BstC8I	GCNNGC	4 cut(s)	405, 502, 526, 627
BstDEI	CTNAG	3 cut(s)	390, 600, 648
BstDSI	CCRYGG	1 cut(s)	630
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	61, 233, 385, 559
BstFNI	CGCG	1 cut(s)	487
BstKTI	GATC	5 cut(s)	67, 73, 164, 313, 436
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	5 cut(s)	64, 70, 161, 310, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 272, 622
BstNI	CCWGG	4 cut(s)	315, 351, 585, 675
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	6 cut(s)	37, 221, 313, 349, 583, 673
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	142, 253
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	588, 629
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	4 cut(s)	61, 233, 385, 559
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	405, 502, 526, 627
Cfr13I	GGNCC	1 cut(s)	671
ClaI	ATCGAT	1 cut(s)	432
CviAII	CATG	4 cut(s)	91, 437, 631, 684
DdeI	CTNAG	3 cut(s)	390, 600, 648
DpnI	GATC	5 cut(s)	66, 72, 163, 312, 435
DpnII	GATC	5 cut(s)	64, 70, 161, 310, 433
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	4 cut(s)	313, 349, 583, 673
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	4 cut(s)	94, 440, 634, 687
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	4 cut(s)	90, 436, 630, 683
Fnu4HI	GCNGC	2 cut(s)	156, 267
FokI	GGATG	4 cut(s)	68, 220, 392, 566
Fsp4HI	GCNGC	2 cut(s)	156, 267
FspBI	CTAG	2 cut(s)	357, 666
GluI	GCNGC	2 cut(s)	156, 267
HaeIII	GGCC	2 cut(s)	588, 629
HapII	CCGG	2 cut(s)	38, 222
Hin1II	CATG	4 cut(s)	94, 440, 634, 687
HinfI	GANTC	4 cut(s)	194, 299, 386, 451
HpaII	CCGG	2 cut(s)	38, 222
HphI	GGTGA	2 cut(s)	488, 578
Hpy166II	GTNNAC	2 cut(s)	6, 671
Hpy188I	TCNGA	5 cut(s)	166, 391, 421, 508, 553
Hpy188III	TCNNGA	5 cut(s)	68, 74, 116, 455, 599
Hpy8I	GTNNAC	2 cut(s)	6, 671
HpyAV	CCTTC	2 cut(s)	222, 581
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	6 cut(s)	6, 260, 275, 407, 500, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 272, 622
HpyF3I	CTNAG	3 cut(s)	390, 600, 648
Hsp92II	CATG	4 cut(s)	94, 440, 634, 687
Kzo9I	GATC	5 cut(s)	64, 70, 161, 310, 433
LmnI	GCTCC	3 cut(s)	41, 142, 613
Lsp1109I	GCAGC	2 cut(s)	142, 253
LweI	GCATC	3 cut(s)	142, 511, 612
MaeI	CTAG	2 cut(s)	357, 666
MaeIII	GTNAC	3 cut(s)	175, 566, 661
MalI	GATC	5 cut(s)	66, 72, 163, 312, 435
MboI	GATC	5 cut(s)	64, 70, 161, 310, 433
MboII	GAAGA	1 cut(s)	530
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	4 cut(s)	99, 170, 394, 422
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	2 cut(s)	188, 445
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	39, 45, 46, 313, 556, 559, 604, 643
Mox20I	TGGCCA	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	629
MspI	CCGG	2 cut(s)	38, 222
MspR9I	CCNGG	6 cut(s)	39, 223, 315, 351, 585, 675
MvaI	CCWGG	4 cut(s)	315, 351, 585, 675
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	3 cut(s)	266, 272, 622
NciI	CCSGG	2 cut(s)	39, 223
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	5 cut(s)	64, 70, 161, 310, 433
NlaIII	CATG	4 cut(s)	94, 440, 634, 687
NlaIV	GGNNCC	2 cut(s)	138, 348
NmuCI	GTSAC	3 cut(s)	175, 566, 661
PfeI	GAWTC	2 cut(s)	299, 386
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	157, 268
PleI	GAGTC	2 cut(s)	188, 445
PpsI	GAGTC	2 cut(s)	188, 445
Psp6I	CCWGG	4 cut(s)	313, 349, 583, 673
PspEI	GGTNACC	1 cut(s)	566
PspGI	CCWGG	4 cut(s)	313, 349, 583, 673
PspN4I	GGNNCC	2 cut(s)	138, 348
PspPI	GGNCC	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	156, 267
Sau3AI	GATC	5 cut(s)	64, 70, 161, 310, 433
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	2 cut(s)	188, 445
ScrFI	CCNGG	6 cut(s)	39, 223, 315, 351, 585, 675
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	142, 511, 612
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	4 cut(s)	99, 170, 394, 422
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	2 cut(s)	357, 666
StyD4I	CCNGG	6 cut(s)	37, 221, 313, 349, 583, 673
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	160, 332, 432, 449
TasI	AATT	4 cut(s)	99, 170, 394, 422
TfiI	GAWTC	2 cut(s)	299, 386
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	3 cut(s)	175, 566, 661
TseI	GCWGC	2 cut(s)	155, 266
Tsp45I	GTSAC	3 cut(s)	175, 566, 661
TspDTI	ATGAA	2 cut(s)	72, 672
TspRI	CASTG	1 cut(s)	15
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	671
XspI	CTAG	2 cut(s)	357, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.