Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007122

Physical Location & Seq

Genomic Coordinates Reverse (-)

8874214 .. 8877202

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGTTTCATAAAAACTCAAGCCAAACTCGGATCTCTTCAGACTCTCCATCTCTCGTCTCGTTTCCTCTTCATCCTCGCTCGATGCCATCCCATCGATCTAAAGGCCGAAGCCAATAATCCTGTCATTAGTTGGGGTCTCTCTCTCTTCTTTGCTCTGCGCGGCCCTTCGAGGCTTCCAACGCCGGACGTGTATGCATCAATTGCTTCTCTCTCCGTCCTCTCTCAGGATTATTACATAGATGTTGATTATCAAGTGGGTGATGGCTTCTCTTTCAGTGGAGGAAAGTATTCAGATGGACCAAGCCCTTCTGATGAATGGTTCAAGCAGGGGAAGATAGTGCTTATATTTCTCTTGGTTTTGGTGAGAAGGTCCAATCTTGGACTTGCAATGGGTGCTGATTCTCAGGCAGCTGCTGATGTTTTTAGAGCATTGTCAGTCATGGGGTTGAAAAGCCAGCTATCCAGTGATGATGATGAATTTCTGGTTGTTCGTCTTTGGAAGGGTCTTCAATGCTGCTGCTATAGTGATTCAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.93

Weight (kDa)

7.65

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17145 AT1G17145 AT1G78420 AT1G78420
fragaria_vesca	FvH4_3g16610
malus_domestica	MD05G1208500.v1.1 MD10G1195000.v1.1
prunus_persica	Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1
pyrus_communis	pycom05g19440 pycom10g16870
rosa_chinensis	RchiOBHm_Chr5g0027751
rosa_laevigata	RLG00000033040
rosa_multiflora	Rmu_sc0013615.1_g000003 Rmu_sc0039701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051860
rosa_rugosa	Rorug05G0100700 Rorug05G0100800 Rorug05G0100900
rosa_samantha	Rh5AG195000 Rh5BG193300 Rh5CG213500 Rh5DG195300
rosa_wichuraiana	Rw5G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	325, 451, 512, 534
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	2 cut(s)	413, 460
AluI	AGCT	2 cut(s)	413, 460
Alw26I	GTCTC	2 cut(s)	63, 143
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	105, 163
ApeKI	GCWGC	4 cut(s)	410, 413, 516, 519
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	164, 299, 372
AsuHPI	GGTGA	2 cut(s)	272, 376
AvaII	GGWCC	2 cut(s)	299, 372
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	400, 422, 503, 506
BccI	CCATC	5 cut(s)	57, 96, 101, 257, 290
BcoDI	GTCTC	2 cut(s)	63, 143
BfmI	CTRYAG	1 cut(s)	523
BisI	GCNGC	5 cut(s)	163, 411, 414, 517, 520
BlsI	GCNGC	5 cut(s)	164, 412, 415, 518, 521
Bme18I	GGWCC	2 cut(s)	299, 372
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	164, 299, 372
BmsI	GCATC	2 cut(s)	74, 206
BpiI	GAAGAC	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	96
BseGI	GGATG	2 cut(s)	72, 88
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	239, 419
BseNI	ACTGG	1 cut(s)	465
BseXI	GCAGC	4 cut(s)	400, 422, 503, 506
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	107, 165
BshVI	ATCGAT	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	63, 143
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	107, 165
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	32, 97
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	2 cut(s)	107, 165
BspCNI	CTCAG	2 cut(s)	238, 418
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	32, 97
Bst6I	CTCTTC	3 cut(s)	42, 74, 152
BstAPI	GCANNNNNTGC	2 cut(s)	203, 395
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	2 cut(s)	225, 405
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	72, 88
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	35, 100
BstMAI	GTCTC	2 cut(s)	63, 143
BstMBI	GATC	2 cut(s)	32, 97
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 203, 395
BstSFI	CTRYAG	1 cut(s)	523
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	400, 422, 503, 506
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	107, 165
BsuTUI	ATCGAT	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	72, 88
BtsIMutI	CAGTG	2 cut(s)	283, 472
Cac8I	GCNNGC	1 cut(s)	458
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	3 cut(s)	164, 299, 372
ClaI	ATCGAT	1 cut(s)	96
CviAII	CATG	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	225, 405
DpnI	GATC	2 cut(s)	34, 99
DpnII	GATC	2 cut(s)	32, 97
Eam1104I	CTCTTC	3 cut(s)	42, 74, 152
EarI	CTCTTC	3 cut(s)	42, 74, 152
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	299, 372
Eco57I	CTGAAG	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	445
FaiI	YATR	6 cut(s)	11, 195, 239, 347, 443, 525
FatI	CATG	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	163, 411, 414, 517, 520
FokI	GGATG	2 cut(s)	59, 75
Fsp4HI	GCNGC	5 cut(s)	163, 411, 414, 517, 520
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	5 cut(s)	163, 411, 414, 517, 520
HaeIII	GGCC	2 cut(s)	107, 165
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	43, 401, 530
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	272, 376
Hpy188I	TCNGA	4 cut(s)	32, 42, 295, 313
Hpy188III	TCNNGA	2 cut(s)	227, 534
HpyAV	CCTTC	4 cut(s)	177, 318, 363, 496
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	197, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 203, 395
HpyF3I	CTNAG	2 cut(s)	225, 405
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	32, 97
LpnPI	CCDG	8 cut(s)	135, 198, 212, 314, 392, 470, 470, 478
Lsp1109I	GCAGC	4 cut(s)	400, 422, 503, 506
LweI	GCATC	2 cut(s)	74, 206
MaeII	ACGT	1 cut(s)	189
MalI	GATC	2 cut(s)	34, 99
MboI	GATC	2 cut(s)	32, 97
MboII	GAAGA	5 cut(s)	29, 61, 139, 346, 500
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	2 cut(s)	201, 479
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	77, 86, 165, 230, 275
Mph1103I	ATGCAT	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	289
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	181, 203, 395
NdeII	GATC	2 cut(s)	32, 97
NlaIII	CATG	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	401, 530
PkrI	GCNGC	5 cut(s)	164, 412, 415, 518, 521
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	164, 299, 372
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	413
SatI	GCNGC	5 cut(s)	163, 411, 414, 517, 520
Sau3AI	GATC	2 cut(s)	32, 97
Sau96I	GGNCC	3 cut(s)	164, 299, 372
SchI	GAGTC	1 cut(s)	37
SetI	ASST	4 cut(s)	192, 374, 415, 462
SfaNI	GCATC	2 cut(s)	74, 206
SfcI	CTRYAG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	299, 372
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	201, 479
SsiI	CCGC	1 cut(s)	162
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	82, 96, 170
TasI	AATT	2 cut(s)	201, 479
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	401, 530
TscAI	CASTG	2 cut(s)	283, 472
TseI	GCWGC	4 cut(s)	410, 413, 516, 519
TspDTI	ATGAA	3 cut(s)	61, 330, 492
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	283, 472
VpaK11BI	GGWCC	2 cut(s)	299, 372
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.