Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21302656 .. 21308493

Gene Structure 5838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTAATAAACTCGGAAAAAGGAGACAGGTGATTGATGAGAAGTATACAAGGCCTCAGGGTCTATACCACCATAAAGATGTGGATCATAAGAAACTCAGGAAGCTCATACTTGAATCTAAGCTTGCTCCATGCTATCCTGGACTTGAAGACTGCATTCGGGATCTTGAAGAATGCCCAATTTGCTTTCTGTTTTATCCAAGTCTCAACAGATCAAGATGTTGCATGAAAGGCATTTGTACAGAGTGTTTTTTGCAGATGAAAGTGCCCAATTCAACTCGTCCTACGCAGTGCCCTTTCTGCAAAACCACCAATTATGCTGTGGAGTTTCGGGGTGTAAAATCTAAGGAGGAGAAGGGCCAGGAACAAATTGAAGAACAACGAGTCATTGAAGCAAAAATTAGAATGCGACAGCAAGAACTTCAGGATGAAGAGGAAAGAATGCAAAATAGACAACTAAATTCTTCTAGCAGAAACATGGCACCAATCGGGGATGAATACAGCTCTGTAACTGTTCCATCTTCCACTTATCCTGCGGAAGGAGAGGAAGTAATTTCTTCTCAGGATTCATGTGCTACAGTGTTTAGACCAACTCCACCTCCACCTCCGGGAGCATACAGGGAGGATGAACTTGATCTGGATCTTGACGATATAATGCTCATGGAAGCAATTTGGCTTTCTATTCAGGAGAATGGGAAACATAAGGCTCCAACTTATGTTGATGCTGCTCGATCTGAACAATTTGTCACAAGACAAAGCTATGACTCATCAGCCATTATACCTTCAGTTTCCGGGTCATCATCATCCCCATCTGGGGGTCTTGCTTGTGCAATAGCTGCCCTTGCAGAACGGCAACAAACGAGTGGGGAATCCTCCATTGATCCTGGTGGCAATAATGTATCGACTTTTAATATGGTTCCAGGCACTAGCAGGTTTTACAACAGGGTGGATGTAGAATCTGAGAATTATCAGCCTGCAGTTAGCCTTTCTGAATTGTCAATCGATCATGGGACATCATCGACTCAAGATGAGAGAGAATGGAATGGTGAGACAACGCGGTCAAGTTATGCAAGCTCTGACACAACCGAAGATGCTGGCACTACTTCTGCATTACCGACCTCGGATGAGATTGAGGGTGACCTTCAAAATGCCCCAGGCCACATTGTTCCTGAGAGTTTTGAGGAGCAGATGATGCTGGCCATGGCTGTTTCTCTGGCTGAGGCGAGAGCTGTGACTAGTGGACCTGGAGTTTCATGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

46.55

Weight (kDa)

4.79

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17145 AT1G17145 AT1G78420 AT1G78420
fragaria_vesca	FvH4_3g16610
malus_domestica	MD05G1208500.v1.1 MD10G1195000.v1.1
prunus_persica	Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1
pyrus_communis	pycom05g19440 pycom10g16870
rosa_chinensis	RchiOBHm_Chr5g0027751
rosa_laevigata	RLG00000033040
rosa_multiflora	Rmu_sc0013615.1_g000003 Rmu_sc0039701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051860
rosa_rugosa	Rorug05G0100700 Rorug05G0100800 Rorug05G0100900
rosa_samantha	Rh5AG195000 Rh5BG193300 Rh5CG213500 Rh5DG195300
rosa_wichuraiana	Rw5G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1057
Acc36I	ACCTGC	1 cut(s)	921
AccB1I	GGYRCC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	1 cut(s)	1057
AciI	CCGC	2 cut(s)	536, 1057
AclWI	GGATC	4 cut(s)	93, 171, 648, 875
AcoI	YGGCCR	1 cut(s)	1197
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	2 cut(s)	407, 768
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	5 cut(s)	539, 608, 813, 814, 815
AgsI	TTSAA	7 cut(s)	116, 149, 170, 276, 374, 392, 1145
AhlI	ACTAGT	1 cut(s)	1235
AjnI	CCWGG	6 cut(s)	139, 360, 883, 919, 1153, 1243
AluBI	AGCT	7 cut(s)	106, 124, 504, 759, 836, 1074, 1229
AluI	AGCT	7 cut(s)	106, 124, 504, 759, 836, 1074, 1229
Alw26I	GTCTC	3 cut(s)	19, 209, 1043
AlwI	GGATC	4 cut(s)	93, 171, 648, 875
AoxI	GGCC	4 cut(s)	53, 358, 1156, 1197
ApeKI	GCWGC	2 cut(s)	725, 836
ApoI	RAATTY	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	358, 1241
AsuC2I	CCSGG	2 cut(s)	609, 793
AsuHPI	GGTGA	3 cut(s)	43, 1058, 1148
AvaII	GGWCC	1 cut(s)	1241
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	270, 296
BalI	TGGCCA	1 cut(s)	1199
BanI	GGYRCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	1218
BbvI	GCAGC	2 cut(s)	712, 823
BccI	CCATC	2 cut(s)	526, 817
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	6 cut(s)	141, 362, 885, 921, 1155, 1245
BcnI	CCSGG	2 cut(s)	609, 793
BcoDI	GTCTC	3 cut(s)	19, 209, 1043
BcuI	ACTAGT	1 cut(s)	1235
BfaI	CTAG	3 cut(s)	468, 927, 1236
BfmI	CTRYAG	2 cut(s)	576, 975
BfuAI	ACCTGC	1 cut(s)	921
BisI	GCNGC	2 cut(s)	726, 837
BlsI	GCNGC	2 cut(s)	727, 838
Bme1390I	CCNGG	8 cut(s)	141, 362, 609, 793, 885, 921, 1155, 1245
Bme18I	GGWCC	1 cut(s)	1241
BmgT120I	GGNCC	2 cut(s)	358, 1241
BmiI	GGNNCC	3 cut(s)	483, 708, 918
BmrFI	CCNGG	8 cut(s)	141, 362, 609, 793, 885, 921, 1155, 1245
BmsI	GCATC	3 cut(s)	712, 1081, 1182
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	1218
BpuEI	CTTGAG	1 cut(s)	1008
BpuMI	CCSGG	2 cut(s)	609, 793
Bsa29I	ATCGAT	1 cut(s)	1002
BsaBI	GATNNNNATC	2 cut(s)	84, 639
BsaJI	CCNNGG	3 cut(s)	1119, 1153, 1200
BsaXI	ACNNNNNCTCC	4 cut(s)	534, 564, 583, 613
Bsc4I	CCNNNNNNNGG	5 cut(s)	539, 608, 813, 814, 815
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	84, 639
BseBI	CCWGG	6 cut(s)	141, 362, 885, 921, 1155, 1245
BseCI	ATCGAT	1 cut(s)	1002
BseDI	CCNNGG	3 cut(s)	1119, 1153, 1200
BseGI	GGATG	6 cut(s)	433, 499, 631, 803, 955, 1129
BseJI	GATNNNNATC	2 cut(s)	84, 639
BseLI	CCNNNNNNNGG	5 cut(s)	539, 608, 813, 814, 815
BseMII	CTCAG	6 cut(s)	71, 112, 575, 951, 1161, 1209
BseRI	GAGGAG	2 cut(s)	365, 1196
BseSI	GKGCMC	2 cut(s)	270, 296
BseXI	GCAGC	2 cut(s)	712, 823
Bsh1236I	CGCG	1 cut(s)	1057
BshFI	GGCC	4 cut(s)	55, 360, 1158, 1199
BshNI	GGYRCC	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	1002
BsiSI	CCGG	2 cut(s)	608, 792
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	5 cut(s)	539, 608, 813, 814, 815
BsmAI	GTCTC	3 cut(s)	19, 209, 1043
BsmFI	GGGAC	1 cut(s)	1024
BsmI	GAATGC	4 cut(s)	156, 179, 411, 447
BsnI	GGCC	4 cut(s)	55, 360, 1158, 1199
Bsp1286I	GDGCHC	2 cut(s)	270, 296
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
Bsp19I	CCATGG	1 cut(s)	1200
BspACI	CCGC	2 cut(s)	536, 1057
BspANI	GGCC	4 cut(s)	55, 360, 1158, 1199
BspCNI	CTCAG	6 cut(s)	70, 111, 574, 952, 1162, 1210
BspDI	ATCGAT	1 cut(s)	1002
BspFNI	CGCG	1 cut(s)	1057
BspLI	GGNNCC	3 cut(s)	483, 708, 918
BspMAI	CTGCAG	1 cut(s)	979
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	4 cut(s)	93, 171, 648, 875
BspT107I	GGYRCC	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	1119, 1153, 1200
BssMI	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
BssNAI	GTATAC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	1200
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	6 cut(s)	141, 362, 885, 921, 1155, 1245
Bst4CI	ACNGT	2 cut(s)	514, 580
Bst6I	CTCTTC	1 cut(s)	426
BstAPI	GCANNNNNTGC	2 cut(s)	836, 1192
BstAUI	TGTACA	1 cut(s)	239
BstC8I	GCNNGC	5 cut(s)	126, 975, 1072, 1096, 1197
BstDEI	CTNAG	8 cut(s)	57, 98, 120, 345, 561, 960, 1170, 1218
BstDSI	CCRYGG	1 cut(s)	1200
BstEII	GGTNACC	1 cut(s)	1136
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	6 cut(s)	433, 499, 631, 803, 955, 1129
BstFNI	CGCG	1 cut(s)	1057
BstKTI	GATC	8 cut(s)	88, 166, 215, 637, 643, 734, 883, 1006
BstMAI	GTCTC	3 cut(s)	19, 209, 1043
BstMBI	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 231, 300, 836, 842, 1192
BstNI	CCWGG	6 cut(s)	141, 362, 885, 921, 1155, 1245
BstPI	GGTNACC	1 cut(s)	1136
BstSCI	CCNGG	8 cut(s)	139, 360, 607, 791, 883, 919, 1153, 1243
BstSFI	CTRYAG	2 cut(s)	576, 975
BstSLI	GKGCMC	2 cut(s)	270, 296
BstUI	CGCG	1 cut(s)	1057
BstV1I	GCAGC	2 cut(s)	712, 823
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	163, 640
BstYI	RGATCY	2 cut(s)	163, 640
BstZ17I	GTATAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	1002
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	55, 360, 1158, 1199
BsuTUI	ATCGAT	1 cut(s)	1002
BtgI	CCRYGG	1 cut(s)	1200
BtsCI	GGATG	6 cut(s)	433, 499, 631, 803, 955, 1129
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	296, 585
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	5 cut(s)	126, 975, 1072, 1096, 1197
Cfr13I	GGNCC	2 cut(s)	358, 1241
ClaI	ATCGAT	1 cut(s)	1002
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	8 cut(s)	132, 226, 478, 570, 661, 1007, 1201, 1254
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	8 cut(s)	57, 98, 120, 345, 561, 960, 1170, 1218
DpnI	GATC	8 cut(s)	87, 165, 214, 636, 642, 733, 882, 1005
DpnII	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
DrdI	GACNNNNNNGTC	1 cut(s)	1057
DseDI	GACNNNNNNGTC	1 cut(s)	1057
EaeI	YGGCCR	1 cut(s)	1197
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	1200
Eco147I	AGGCCT	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	1241
Eco57I	CTGAAG	2 cut(s)	407, 768
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	1136
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	1136
EcoRII	CCWGG	6 cut(s)	139, 360, 883, 919, 1153, 1243
EcoT14I	CCWWGG	1 cut(s)	1200
ErhI	CCWWGG	1 cut(s)	1200
FaeI	CATG	8 cut(s)	135, 229, 481, 573, 664, 1010, 1204, 1257
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	8 cut(s)	131, 225, 477, 569, 660, 1006, 1200, 1253
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	726, 837
FokI	GGATG	6 cut(s)	440, 506, 638, 790, 962, 1136
Fsp4HI	GCNGC	2 cut(s)	726, 837
FspBI	CTAG	3 cut(s)	468, 927, 1236
GluI	GCNGC	2 cut(s)	726, 837
HaeIII	GGCC	4 cut(s)	55, 360, 1158, 1199
HapII	CCGG	2 cut(s)	608, 792
Hin1II	CATG	8 cut(s)	135, 229, 481, 573, 664, 1010, 1204, 1257
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	7 cut(s)	116, 384, 566, 764, 869, 956, 1021
HpaII	CCGG	2 cut(s)	608, 792
HphI	GGTGA	3 cut(s)	43, 1058, 1148
Hpy166II	GTNNAC	2 cut(s)	48, 1241
Hpy188I	TCNGA	6 cut(s)	17, 736, 961, 991, 1078, 1123
Hpy8I	GTNNAC	2 cut(s)	48, 1241
HpyAV	CCTTC	4 cut(s)	349, 533, 792, 1151
HpyCH4III	ACNGT	2 cut(s)	514, 580
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 231, 300, 836, 842, 1192
HpyF3I	CTNAG	8 cut(s)	57, 98, 120, 345, 561, 960, 1170, 1218
Hsp92II	CATG	8 cut(s)	135, 229, 481, 573, 664, 1010, 1204, 1257
Kzo9I	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
LmnI	GCTCC	4 cut(s)	133, 611, 712, 1183
Lsp1109I	GCAGC	2 cut(s)	712, 823
LweI	GCATC	3 cut(s)	712, 1081, 1182
MaeI	CTAG	3 cut(s)	468, 927, 1236
MaeIII	GTNAC	4 cut(s)	508, 745, 1136, 1231
MalI	GATC	8 cut(s)	87, 165, 214, 636, 642, 733, 882, 1005
MboI	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
MboII	GAAGA	8 cut(s)	161, 182, 386, 443, 456, 513, 549, 1100
MflI	RGATCY	2 cut(s)	163, 640
MhlI	GDGCHC	2 cut(s)	270, 296
MlsI	TGGCCA	1 cut(s)	1199
MluNI	TGGCCA	1 cut(s)	1199
MlyI	GAGTC	3 cut(s)	393, 758, 1015
MmeI	TCCRAC	1 cut(s)	734
Mox20I	TGGCCA	1 cut(s)	1199
MscI	TGGCCA	1 cut(s)	1199
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	1199
MspI	CCGG	2 cut(s)	608, 792
MspR9I	CCNGG	8 cut(s)	141, 362, 609, 793, 885, 921, 1155, 1245
Mva1269I	GAATGC	4 cut(s)	156, 179, 411, 447
MvaI	CCWGG	6 cut(s)	141, 362, 885, 921, 1155, 1245
MvnI	CGCG	1 cut(s)	1057
MwoI	GCNNNNNNNGC	6 cut(s)	183, 231, 300, 836, 842, 1192
NciI	CCSGG	2 cut(s)	609, 793
NcoI	CCATGG	1 cut(s)	1200
NdeII	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
NlaIII	CATG	8 cut(s)	135, 229, 481, 573, 664, 1010, 1204, 1257
NlaIV	GGNNCC	3 cut(s)	483, 708, 918
NmuCI	GTSAC	3 cut(s)	745, 1136, 1231
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	4 cut(s)	156, 179, 411, 447
PfeI	GAWTC	4 cut(s)	116, 566, 869, 956
PfoI	TCCNGGA	2 cut(s)	139, 607
PkrI	GCNGC	2 cut(s)	727, 838
PleI	GAGTC	3 cut(s)	392, 758, 1015
PpsI	GAGTC	3 cut(s)	392, 758, 1015
Psp6I	CCWGG	6 cut(s)	139, 360, 883, 919, 1153, 1243
PspEI	GGTNACC	1 cut(s)	1136
PspGI	CCWGG	6 cut(s)	139, 360, 883, 919, 1153, 1243
PspN4I	GGNNCC	3 cut(s)	483, 708, 918
PspPI	GGNCC	2 cut(s)	358, 1241
PstI	CTGCAG	1 cut(s)	979
PsuI	RGATCY	2 cut(s)	163, 640
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	2 cut(s)	726, 837
Sau3AI	GATC	8 cut(s)	85, 163, 212, 634, 640, 731, 880, 1003
Sau96I	GGNCC	2 cut(s)	358, 1241
SchI	GAGTC	3 cut(s)	393, 758, 1015
ScrFI	CCNGG	8 cut(s)	141, 362, 609, 793, 885, 921, 1155, 1245
SduI	GDGCHC	2 cut(s)	270, 296
SfaNI	GCATC	3 cut(s)	712, 1081, 1182
SfcI	CTRYAG	2 cut(s)	576, 975
SinI	GGWCC	1 cut(s)	1241
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	1023
SmoI	CTYRAG	1 cut(s)	1023
SpeI	ACTAGT	1 cut(s)	1235
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	536, 1057
SspMI	CTAG	3 cut(s)	468, 927, 1236
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	8 cut(s)	139, 360, 607, 791, 883, 919, 1153, 1243
StyI	CCWWGG	1 cut(s)	1200
TaaI	ACNGT	2 cut(s)	514, 580
TaqI	TCGA	4 cut(s)	730, 902, 1002, 1019
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	4 cut(s)	116, 566, 869, 956
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	2 cut(s)	296, 585
TseFI	GTSAC	3 cut(s)	745, 1136, 1231
TseI	GCWGC	2 cut(s)	725, 836
Tsp45I	GTSAC	3 cut(s)	745, 1136, 1231
TspDTI	ATGAA	7 cut(s)	242, 275, 444, 510, 558, 642, 1242
TspRI	CASTG	2 cut(s)	296, 585
VpaK11BI	GGWCC	1 cut(s)	1241
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	3 cut(s)	468, 927, 1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.