Rh5AG195000

cellular response to glucose starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007122
Physical Location & Seq
Reverse (-)
22634941 .. 22637995
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG195000.1

Sequence Viewer

Length: 1263 bp
ATGGGTAATAAACTCGGAAAAAGGAGACAGGTGATTGATGAGAAGTATACAAGGCCTCAGGGTCTATACCACCATAAAGATGTGGATCATAAGAAACTCAGGAAGCTCATACTTGAATCTAAGCTTGCTCCATGCTATCCTGGACTTGAAGACTGCATTCGGGATCTTGAAGAATGCCCAATTTGCTTTCTGTTTTATCCAAGTCTCAACAGATCAAGATGTTGCATGAAAGGCATTTGTACAGAGTGTTTTTTGCAGATGAAAGTGCCCAATTCAACTCGTCCTACGCAGTGTCCTTTCTGCAAAACCACCAATTATGCTGTGGAGTTTCGGGGTGTAAAATCTAAGGAGGAGAAGGGCCAGGAACAAATTGAAGAACAACGAGTCATTGAAGCAAAAATTAGAATGCGACAGCAAGAACTTCAGGATGAAGAGGAAAGAATGCAAAATAGACAACTAAATTCTTCTAGCAGAAACATGGCACCAATCGGGGATGAATACAGCTCTGTAACTGTTCCATCTTCCACTTATCCTGCGGAAGGAGAGGAAGTAATTTCTTCTCAGGATTCATGTGCTACAGTGTTTAGACCAACTCCACCTCCACCTCCGGGAGCATACAGGGAGGATGAACTTGATCTGGATCTTGACGATATAATGCTCATGGAAGCAATTTGGCTTTCTATTCAGGAGAATGGGAAACATAAGGCTCCAACTTATGTTGATGCTGCTCGATCTGAACAATTTGTCACAAGACAAAGCTATGACTCATCAGCCATTATACCTTCAGTTTCCGGGTCATCATCATCCCCATCTGGGGGTCTTGCTTGTGCAATAGCTGCCCTTGCAGAACGGCAACAAACGAGTGGGGAATCCTCCATTGATCCTGGTGGCAATAATGTATCGACTTTTAATATGGTTCCAGGCACTAGCAGGTTTTACAACAGGGTGGATGTAGAATCTGAGAATTATCAGCCTGCAGTTAGCCTTTCTGAATTGTCAATCGATCATGGGACATCATCGACTCAAGATGAGAGAGAATGGAATGGTGAGACAACGCGGTCAAGTTATGCAAGCTCTGACACAACCGAAGATGCTGGCACTACTTCTGCATTACCGACCTCGGATGAGATTGAGGGTGACCTTCAAAATGCCCCAGGCCACATTGTTCCTGAGAGTTTTGAGGAGCAGATGATGCTGGCCATGGCTGTTTCTCTGGCTGAGGCGAGAGCTGTGACTAGTGGACCTGGAGTTTCATGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

46.55

Weight (kDa)

4.79

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1057
Acc36I ACCTGC 1 cut(s) 921
AccB1I GGYRCC 1 cut(s) 481
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 1057
AciI CCGC 2 cut(s) 536, 1057
AclWI GGATC 4 cut(s) 93, 171, 648, 875
AcoI YGGCCR 1 cut(s) 1197
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 407, 768
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 5 cut(s) 539, 608, 813, 814, 815
AgsI TTSAA 7 cut(s) 116, 149, 170, 276, 374, 392, 1145
AhlI ACTAGT 1 cut(s) 1235
AjnI CCWGG 6 cut(s) 139, 360, 883, 919, 1153, 1243
AluBI AGCT 7 cut(s) 106, 124, 504, 759, 836, 1074, 1229
AluI AGCT 7 cut(s) 106, 124, 504, 759, 836, 1074, 1229
Alw26I GTCTC 3 cut(s) 19, 209, 1043
AlwI GGATC 4 cut(s) 93, 171, 648, 875
AoxI GGCC 4 cut(s) 53, 358, 1156, 1197
ApeKI GCWGC 2 cut(s) 725, 836
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 358, 1241
AsuC2I CCSGG 2 cut(s) 609, 793
AsuHPI GGTGA 3 cut(s) 43, 1058, 1148
AvaII GGWCC 1 cut(s) 1241
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 1199
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 1218
BbvI GCAGC 2 cut(s) 712, 823
BccI CCATC 2 cut(s) 526, 817
BceAI ACGGC 1 cut(s) 866
BciT130I CCWGG 6 cut(s) 141, 362, 885, 921, 1155, 1245
BcnI CCSGG 2 cut(s) 609, 793
BcoDI GTCTC 3 cut(s) 19, 209, 1043
BcuI ACTAGT 1 cut(s) 1235
BfaI CTAG 3 cut(s) 468, 927, 1236
BfmI CTRYAG 2 cut(s) 576, 975
BfuAI ACCTGC 1 cut(s) 921
BisI GCNGC 2 cut(s) 726, 837
BlsI GCNGC 2 cut(s) 727, 838
Bme1390I CCNGG 8 cut(s) 141, 362, 609, 793, 885, 921, 1155, 1245
Bme18I GGWCC 1 cut(s) 1241
BmgT120I GGNCC 2 cut(s) 358, 1241
BmiI GGNNCC 3 cut(s) 483, 708, 918
BmrFI CCNGG 8 cut(s) 141, 362, 609, 793, 885, 921, 1155, 1245
BmsI GCATC 3 cut(s) 712, 1081, 1182
BpiI GAAGAC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 1 cut(s) 1008
BpuMI CCSGG 2 cut(s) 609, 793
Bsa29I ATCGAT 1 cut(s) 1002
BsaBI GATNNNNATC 2 cut(s) 84, 639
BsaJI CCNNGG 3 cut(s) 1119, 1153, 1200
BsaXI ACNNNNNCTCC 4 cut(s) 534, 564, 583, 613
Bsc4I CCNNNNNNNGG 5 cut(s) 539, 608, 813, 814, 815
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 2 cut(s) 84, 639
BseBI CCWGG 6 cut(s) 141, 362, 885, 921, 1155, 1245
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 3 cut(s) 1119, 1153, 1200
BseGI GGATG 6 cut(s) 433, 499, 631, 803, 955, 1129
BseJI GATNNNNATC 2 cut(s) 84, 639
BseLI CCNNNNNNNGG 5 cut(s) 539, 608, 813, 814, 815
BseMII CTCAG 6 cut(s) 71, 112, 575, 951, 1161, 1209
BseRI GAGGAG 2 cut(s) 365, 1196
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 2 cut(s) 712, 823
Bsh1236I CGCG 1 cut(s) 1057
BshFI GGCC 4 cut(s) 55, 360, 1158, 1199
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 1002
BsiSI CCGG 2 cut(s) 608, 792
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 5 cut(s) 539, 608, 813, 814, 815
BsmAI GTCTC 3 cut(s) 19, 209, 1043
BsmFI GGGAC 1 cut(s) 1024
BsmI GAATGC 4 cut(s) 156, 179, 411, 447
BsnI GGCC 4 cut(s) 55, 360, 1158, 1199
Bsp1286I GDGCHC 1 cut(s) 270
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
Bsp19I CCATGG 1 cut(s) 1200
BspACI CCGC 2 cut(s) 536, 1057
BspANI GGCC 4 cut(s) 55, 360, 1158, 1199
BspCNI CTCAG 6 cut(s) 70, 111, 574, 952, 1162, 1210
BspDI ATCGAT 1 cut(s) 1002
BspFNI CGCG 1 cut(s) 1057
BspLI GGNNCC 3 cut(s) 483, 708, 918
BspMAI CTGCAG 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 921
BspPI GGATC 4 cut(s) 93, 171, 648, 875
BspT107I GGYRCC 1 cut(s) 481
BsrGI TGTACA 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 1119, 1153, 1200
BssMI GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
BssNAI GTATAC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 1200
Bst1107I GTATAC 1 cut(s) 48
Bst2UI CCWGG 6 cut(s) 141, 362, 885, 921, 1155, 1245
Bst4CI ACNGT 2 cut(s) 514, 580
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 2 cut(s) 836, 1192
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 5 cut(s) 126, 975, 1072, 1096, 1197
BstDEI CTNAG 8 cut(s) 57, 98, 120, 345, 561, 960, 1170, 1218
BstDSI CCRYGG 1 cut(s) 1200
BstEII GGTNACC 1 cut(s) 1136
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 6 cut(s) 433, 499, 631, 803, 955, 1129
BstFNI CGCG 1 cut(s) 1057
BstKTI GATC 8 cut(s) 88, 166, 215, 637, 643, 734, 883, 1006
BstMAI GTCTC 3 cut(s) 19, 209, 1043
BstMBI GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
BstMWI GCNNNNNNNGC 5 cut(s) 183, 231, 836, 842, 1192
BstNI CCWGG 6 cut(s) 141, 362, 885, 921, 1155, 1245
BstPI GGTNACC 1 cut(s) 1136
BstSCI CCNGG 8 cut(s) 139, 360, 607, 791, 883, 919, 1153, 1243
BstSFI CTRYAG 2 cut(s) 576, 975
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 1057
BstV1I GCAGC 2 cut(s) 712, 823
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 163, 640
BstYI RGATCY 2 cut(s) 163, 640
BstZ17I GTATAC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 1002
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 4 cut(s) 55, 360, 1158, 1199
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 1 cut(s) 1200
BtsCI GGATG 6 cut(s) 433, 499, 631, 803, 955, 1129
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 296, 585
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 5 cut(s) 126, 975, 1072, 1096, 1197
Cfr13I GGNCC 2 cut(s) 358, 1241
ClaI ATCGAT 1 cut(s) 1002
Csp6I GTAC 1 cut(s) 240
CviAII CATG 8 cut(s) 132, 226, 478, 570, 661, 1007, 1201, 1254
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 8 cut(s) 57, 98, 120, 345, 561, 960, 1170, 1218
DpnI GATC 8 cut(s) 87, 165, 214, 636, 642, 733, 882, 1005
DpnII GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
DrdI GACNNNNNNGTC 1 cut(s) 1057
DseDI GACNNNNNNGTC 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 1197
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 1200
Eco147I AGGCCT 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 1241
Eco57I CTGAAG 2 cut(s) 407, 768
Eco81I CCTNAGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 1136
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO65I GGTNACC 1 cut(s) 1136
EcoRII CCWGG 6 cut(s) 139, 360, 883, 919, 1153, 1243
EcoT14I CCWWGG 1 cut(s) 1200
ErhI CCWWGG 1 cut(s) 1200
FaeI CATG 8 cut(s) 135, 229, 481, 573, 664, 1010, 1204, 1257
FaqI GGGAC 1 cut(s) 1024
FatI CATG 8 cut(s) 131, 225, 477, 569, 660, 1006, 1200, 1253
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 726, 837
FokI GGATG 6 cut(s) 440, 506, 638, 790, 962, 1136
Fsp4HI GCNGC 2 cut(s) 726, 837
FspBI CTAG 3 cut(s) 468, 927, 1236
GluI GCNGC 2 cut(s) 726, 837
HaeIII GGCC 4 cut(s) 55, 360, 1158, 1199
HapII CCGG 2 cut(s) 608, 792
Hin1II CATG 8 cut(s) 135, 229, 481, 573, 664, 1010, 1204, 1257
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 7 cut(s) 116, 384, 566, 764, 869, 956, 1021
HpaII CCGG 2 cut(s) 608, 792
HphI GGTGA 3 cut(s) 43, 1058, 1148
Hpy166II GTNNAC 2 cut(s) 48, 1241
Hpy188I TCNGA 6 cut(s) 17, 736, 961, 991, 1078, 1123
Hpy8I GTNNAC 2 cut(s) 48, 1241
HpyAV CCTTC 4 cut(s) 349, 533, 792, 1151
HpyCH4III ACNGT 2 cut(s) 514, 580
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 231, 836, 842, 1192
HpyF3I CTNAG 8 cut(s) 57, 98, 120, 345, 561, 960, 1170, 1218
Hsp92II CATG 8 cut(s) 135, 229, 481, 573, 664, 1010, 1204, 1257
Kzo9I GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
LmnI GCTCC 4 cut(s) 133, 611, 712, 1183
Lsp1109I GCAGC 2 cut(s) 712, 823
LweI GCATC 3 cut(s) 712, 1081, 1182
MaeI CTAG 3 cut(s) 468, 927, 1236
MaeIII GTNAC 4 cut(s) 508, 745, 1136, 1231
MalI GATC 8 cut(s) 87, 165, 214, 636, 642, 733, 882, 1005
MboI GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
MboII GAAGA 8 cut(s) 161, 182, 386, 443, 456, 513, 549, 1100
MflI RGATCY 2 cut(s) 163, 640
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 1199
MluNI TGGCCA 1 cut(s) 1199
MlyI GAGTC 3 cut(s) 393, 758, 1015
MmeI TCCRAC 1 cut(s) 734
Mox20I TGGCCA 1 cut(s) 1199
MscI TGGCCA 1 cut(s) 1199
MseI TTAA 1 cut(s) 909
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 1199
MspI CCGG 2 cut(s) 608, 792
MspR9I CCNGG 8 cut(s) 141, 362, 609, 793, 885, 921, 1155, 1245
Mva1269I GAATGC 4 cut(s) 156, 179, 411, 447
MvaI CCWGG 6 cut(s) 141, 362, 885, 921, 1155, 1245
MvnI CGCG 1 cut(s) 1057
MwoI GCNNNNNNNGC 5 cut(s) 183, 231, 836, 842, 1192
NciI CCSGG 2 cut(s) 609, 793
NcoI CCATGG 1 cut(s) 1200
NdeII GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
NlaIII CATG 8 cut(s) 135, 229, 481, 573, 664, 1010, 1204, 1257
NlaIV GGNNCC 3 cut(s) 483, 708, 918
NmuCI GTSAC 3 cut(s) 745, 1136, 1231
PceI AGGCCT 1 cut(s) 55
PctI GAATGC 4 cut(s) 156, 179, 411, 447
PfeI GAWTC 4 cut(s) 116, 566, 869, 956
PfoI TCCNGGA 2 cut(s) 139, 607
PkrI GCNGC 2 cut(s) 727, 838
PleI GAGTC 3 cut(s) 392, 758, 1015
PpsI GAGTC 3 cut(s) 392, 758, 1015
Psp6I CCWGG 6 cut(s) 139, 360, 883, 919, 1153, 1243
PspEI GGTNACC 1 cut(s) 1136
PspGI CCWGG 6 cut(s) 139, 360, 883, 919, 1153, 1243
PspN4I GGNNCC 3 cut(s) 483, 708, 918
PspPI GGNCC 2 cut(s) 358, 1241
PstI CTGCAG 1 cut(s) 979
PsuI RGATCY 2 cut(s) 163, 640
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 909
SatI GCNGC 2 cut(s) 726, 837
Sau3AI GATC 8 cut(s) 85, 163, 212, 634, 640, 731, 880, 1003
Sau96I GGNCC 2 cut(s) 358, 1241
SchI GAGTC 3 cut(s) 393, 758, 1015
ScrFI CCNGG 8 cut(s) 141, 362, 609, 793, 885, 921, 1155, 1245
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 3 cut(s) 712, 1081, 1182
SfcI CTRYAG 2 cut(s) 576, 975
SinI GGWCC 1 cut(s) 1241
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 1023
SmoI CTYRAG 1 cut(s) 1023
SpeI ACTAGT 1 cut(s) 1235
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 2 cut(s) 536, 1057
SspMI CTAG 3 cut(s) 468, 927, 1236
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 8 cut(s) 139, 360, 607, 791, 883, 919, 1153, 1243
StyI CCWWGG 1 cut(s) 1200
TaaI ACNGT 2 cut(s) 514, 580
TaqI TCGA 4 cut(s) 730, 902, 1002, 1019
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 4 cut(s) 116, 566, 869, 956
Tru1I TTAA 1 cut(s) 909
Tru9I TTAA 1 cut(s) 909
TscAI CASTG 2 cut(s) 296, 585
TseFI GTSAC 3 cut(s) 745, 1136, 1231
TseI GCWGC 2 cut(s) 725, 836
Tsp45I GTSAC 3 cut(s) 745, 1136, 1231
TspDTI ATGAA 7 cut(s) 242, 275, 444, 510, 558, 642, 1242
TspRI CASTG 2 cut(s) 296, 585
VpaK11BI GGWCC 1 cut(s) 1241
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 3 cut(s) 468, 927, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.