AT1G78420

protein binding, zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007122
Physical Location & Seq
Forward (+)
29504532 .. 29507680
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78420.1

Sequence Viewer

Length: 1206 bp
ATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAGAAAGGTATACAAAGCCTCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGCTCAGAAAACTGATTGTGGAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAAGCTGTCATGATCTTGAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGATGTTGCATGAAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCCTACTCAGTGCCCTTTTTGTAAAACTCCCAACTATGCTGTCGAGTATCGTGGAGTCAAGTCAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAATAAGGATGAGGCAGAAAGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAATCATGTTCCTCTAGCACAAGCGCAATGACTGGCGAGATGGAATATGGTTCAACTTCAGCCATATCTTATAACTCCCTCATGGATGACGGGGAAATTGCTCCATCGCAGAACGCATCTGTTGTTAGACAACATTCCCGCCCGCGAGGAAACAGGGAGGATGAGGTTGACGTTGACCTTGAGGAATTGATGGTCATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATTCAGCTTCAGGGGAAATTACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTTCTTCACCACCACGAGTGACTCCAATCGTAGAACCAGCAACACCGTCTTCATCATCTGGTGGGCTTTCTTGTGCAATCTCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAGTCACAATCATAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCCGGAAATTGTGACAGTTACTACGACATAGAACAAGAGGTAGATGGCATAGACAACCATCATCATCATCGTCATCATTACGAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTTACATGACAGGCGAGGGCTTCCACAACTTTCCTCCTCCTCCACCTCTGGTCATTGTTCCAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATGCCACGACGACATGTGCACCAACTGAAGTTACCTGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.05

Weight (kDa)

5.22

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AccI GTMKAC 2 cut(s) 47, 84
AccII CGCG 1 cut(s) 601
AciI CCGC 3 cut(s) 595, 599, 840
AclI AACGTT 1 cut(s) 903
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 2 cut(s) 498, 690
AfaI GTAC 2 cut(s) 194, 241
AfiI CCNNNNNNNGG 2 cut(s) 402, 726
AflIII ACRYGT 1 cut(s) 1175
AgsI TTSAA 5 cut(s) 170, 365, 374, 458, 510
AjnI CCWGG 2 cut(s) 139, 1196
AluBI AGCT 6 cut(s) 97, 124, 156, 278, 704, 1035
AluI AGCT 6 cut(s) 97, 124, 156, 278, 704, 1035
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 1179
AoxI GGCC 1 cut(s) 281
ApaLI GTGCAC 1 cut(s) 1179
ApeKI GCWGC 1 cut(s) 1026
ApoI RAATTY 1 cut(s) 697
AspLEI GCGC 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 927
AsuHPI GGTGA 1 cut(s) 756
BaeGI GKGCMC 2 cut(s) 296, 1183
BauI CACGAG 1 cut(s) 771
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 1183
BbvI GCAGC 1 cut(s) 1038
BccI CCATC 7 cut(s) 490, 568, 640, 962, 990, 1003, 1126
BciT130I CCWGG 2 cut(s) 141, 1198
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 3 cut(s) 201, 471, 726
BisI GCNGC 1 cut(s) 1027
BlsI GCNGC 1 cut(s) 1028
Bme1390I CCNGG 3 cut(s) 141, 927, 1198
BmrFI CCNGG 3 cut(s) 141, 927, 1198
BmsI GCATC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 2 cut(s) 162, 859
BpuEI CTTGAG 2 cut(s) 42, 656
BpuMI CCSGG 1 cut(s) 927
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 726
Bse1I ACTGG 2 cut(s) 493, 876
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 2 cut(s) 141, 1198
BseGI GGATG 4 cut(s) 411, 433, 547, 622
BseLI CCNNNNNNNGG 2 cut(s) 402, 726
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 112, 302
BseNI ACTGG 2 cut(s) 493, 876
BseRI GAGGAG 2 cut(s) 1071, 1074
BseSI GKGCMC 2 cut(s) 296, 1183
BseXI GCAGC 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 1183
BsiSI CCGG 1 cut(s) 927
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 2 cut(s) 402, 726
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 700
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 296, 1183
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 2 cut(s) 163, 212
BspACI CCGC 3 cut(s) 595, 599, 840
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 111, 301
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 489
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 2 cut(s) 493, 876
BssMI GATC 2 cut(s) 163, 212
BssNAI GTATAC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 771
Bst1107I GTATAC 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 2 cut(s) 141, 1198
Bst4CI ACNGT 3 cut(s) 804, 917, 941
Bst6I CTCTTC 4 cut(s) 17, 369, 429, 727
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 126, 599
BstDEI CTNAG 3 cut(s) 98, 120, 288
BstENI CCTNNNNNAGG 1 cut(s) 724
BstF5I GGATG 4 cut(s) 411, 433, 547, 622
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 2 cut(s) 166, 215
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 163, 212
BstMWI GCNNNNNNNGC 3 cut(s) 231, 839, 1032
BstNI CCWGG 2 cut(s) 141, 1198
BstNSI RCATGY 1 cut(s) 1179
BstSCI CCNGG 3 cut(s) 139, 925, 1196
BstSLI GKGCMC 2 cut(s) 296, 1183
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 1038
BstV2I GAAGAC 1 cut(s) 798
BstXI CCANNNNNNTGG 1 cut(s) 863
BstZ17I GTATAC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 4 cut(s) 411, 433, 547, 622
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 126, 599
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 482
CseI GACGC 1 cut(s) 697
Csp6I GTAC 2 cut(s) 193, 240
CviAII CATG 8 cut(s) 161, 226, 462, 538, 652, 1051, 1163, 1176
CviQI GTAC 2 cut(s) 193, 240
DdeI CTNAG 3 cut(s) 98, 120, 288
DpnI GATC 2 cut(s) 165, 214
DpnII GATC 2 cut(s) 163, 212
Eam1104I CTCTTC 4 cut(s) 17, 369, 429, 727
EarI CTCTTC 4 cut(s) 17, 369, 429, 727
Eco57I CTGAAG 2 cut(s) 498, 690
EcoNI CCTNNNNNAGG 1 cut(s) 724
EcoRII CCWGG 2 cut(s) 139, 1196
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 8 cut(s) 164, 229, 465, 541, 655, 1054, 1166, 1179
FaqI GGGAC 1 cut(s) 700
FatI CATG 8 cut(s) 160, 225, 461, 537, 651, 1050, 1162, 1175
FauI CCCGC 2 cut(s) 602, 606
FblI GTMKAC 2 cut(s) 47, 84
Fnu4HI GCNGC 1 cut(s) 1027
FokI GGATG 4 cut(s) 418, 440, 554, 629
Fsp4HI GCNGC 1 cut(s) 1027
FspBI CTAG 3 cut(s) 201, 471, 726
GlaI GCGC 1 cut(s) 481
GluI GCNGC 1 cut(s) 1027
GsuI CTGGAG 2 cut(s) 162, 859
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 927
HgaI GACGC 1 cut(s) 697
HhaI GCGC 1 cut(s) 482
Hin1II CATG 8 cut(s) 164, 229, 465, 541, 655, 1054, 1166, 1179
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HincII GTYRAC 4 cut(s) 85, 625, 631, 901
HindII GTYRAC 4 cut(s) 85, 625, 631, 901
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 6 cut(s) 116, 265, 336, 458, 778, 869
HpaII CCGG 1 cut(s) 927
HphI GGTGA 1 cut(s) 756
Hpy166II GTNNAC 6 cut(s) 48, 85, 625, 631, 901, 1181
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 6 cut(s) 161, 167, 216, 455, 677, 1106
Hpy8I GTNNAC 6 cut(s) 48, 85, 625, 631, 901, 1181
Hpy99I CGWCG 2 cut(s) 89, 1174
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 3 cut(s) 804, 917, 941
HpyCH4IV ACGT 4 cut(s) 87, 451, 627, 903
HpyCH4V TGCA 6 cut(s) 225, 256, 424, 445, 833, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 839, 1032
HpyF3I CTNAG 3 cut(s) 98, 120, 288
HpySE526I ACGT 4 cut(s) 87, 451, 627, 903
Hsp92II CATG 8 cut(s) 164, 229, 465, 541, 655, 1054, 1166, 1179
HspAI GCGC 1 cut(s) 480
Kzo9I GATC 2 cut(s) 163, 212
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 133, 562
Lsp1109I GCAGC 1 cut(s) 1038
LweI GCATC 1 cut(s) 581
MaeI CTAG 3 cut(s) 201, 471, 726
MaeII ACGT 4 cut(s) 87, 451, 627, 903
MaeIII GTNAC 6 cut(s) 736, 775, 878, 935, 941, 1192
MalI GATC 2 cut(s) 165, 214
MboI GATC 2 cut(s) 163, 212
MhlI GDGCHC 2 cut(s) 296, 1183
MluCI AATT 7 cut(s) 180, 271, 552, 641, 697, 714, 931
MlyI GAGTC 3 cut(s) 125, 345, 772
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 753
MspI CCGG 1 cut(s) 927
MspR9I CCNGG 3 cut(s) 141, 927, 1198
MvaI CCWGG 2 cut(s) 141, 1198
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 3 cut(s) 231, 839, 1032
NciI CCSGG 1 cut(s) 927
NdeII GATC 2 cut(s) 163, 212
NlaIII CATG 8 cut(s) 164, 229, 465, 541, 655, 1054, 1166, 1179
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 3 cut(s) 775, 878, 935
NspI RCATGY 1 cut(s) 1179
PagI TCATGA 1 cut(s) 160
PciI ACATGT 1 cut(s) 1175
PciSI GCTCTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 265, 458, 869
PfoI TCCNGGA 2 cut(s) 139, 925
PkrI GCNGC 1 cut(s) 1028
PleI GAGTC 3 cut(s) 124, 344, 772
PpsI GAGTC 3 cut(s) 124, 344, 772
PscI ACATGT 1 cut(s) 1175
PsiI TTATAA 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 903
Psp6I CCWGG 2 cut(s) 139, 1196
PspGI CCWGG 2 cut(s) 139, 1196
RsaI GTAC 2 cut(s) 194, 241
RsaNI GTAC 2 cut(s) 193, 240
RseI CAYNNNNRTG 1 cut(s) 753
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 1027
Sau3AI GATC 2 cut(s) 163, 212
SchI GAGTC 3 cut(s) 125, 345, 772
ScrFI CCNGG 3 cut(s) 141, 927, 1198
SduI GDGCHC 2 cut(s) 296, 1183
SfaNI GCATC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 57, 635
SmoI CTYRAG 2 cut(s) 57, 635
Sse9I AATT 7 cut(s) 180, 271, 552, 641, 697, 714, 931
SsiI CCGC 3 cut(s) 595, 599, 840
SspMI CTAG 3 cut(s) 201, 471, 726
StyD4I CCNGG 3 cut(s) 139, 925, 1196
TaaI ACNGT 3 cut(s) 804, 917, 941
TaiI ACGT 4 cut(s) 90, 454, 630, 906
TaqI TCGA 2 cut(s) 84, 324
TasI AATT 7 cut(s) 180, 271, 552, 641, 697, 714, 931
TatI WGTACW 2 cut(s) 192, 239
TfiI GAWTC 3 cut(s) 265, 458, 869
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 3 cut(s) 775, 878, 935
TseI GCWGC 1 cut(s) 1026
Tsp45I GTSAC 3 cut(s) 775, 878, 935
TspDTI ATGAA 7 cut(s) 165, 242, 275, 447, 798, 900, 1151
TspRI CASTG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 1179
XagI CCTNNNNNAGG 1 cut(s) 724
XapI RAATTY 1 cut(s) 697
XceI RCATGY 1 cut(s) 1179
XmiI GTMKAC 2 cut(s) 47, 84
XspI CTAG 3 cut(s) 201, 471, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.