Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007122

Physical Location & Seq

Genomic Coordinates Reverse (-)

10469902 .. 10475491

Gene Structure 5590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTAATAAACTTGGTAAAAGGAGACAGGTGATTGATGAGAAGTATACAAGACCTCAGGGTCTCTACCACCATAAAGATGTGGATCATAAGAAACTCAGGAAGCTCATACTTGAATTGAAGCTTGCTCCATGCTTTCCTGGAGATGAAGACTGCAATCGGGATCTTGAAGAATGCCCAATTTGCTTTCTGTATTACCCAAGTCTCAACAGATCAAGATGTTGCATGAAAGGCATTTGTACTGAGTGTTTTCTCCAAATGAAAGTCCCGAATTCAACTCGTCCTACGCAGTGCCCTTTCTGCAAAACCACCAATTACGCTGTGGAGTTTCGGGGTGTCAAATCTAAGGAGGAGAAGGGTCAGGAACAAATTGAAGAACAACGAGTCATAGAAGCAAAAATTAGAATGCGACAGCAAGAGCTTCAGGATGAAGAGAAAAGAATGCAAAATAGACAACTAAATTCTTCTAGCAGAAACATGGTACCAATTGGGGATGAATACAGCTCTGTAACTGTTCCATCTTCCACTTATCATGCGGAAGAAGAGGAAATTTCTCAGGATTCATGTGCTTCAATGTTAAGACCAACTCCGCCTCCGGGAGCATACAGGGAGGATGAAGTTGATCCGGATCTTGATGATATAATGCTCATGGAAGCAATTTGGCTTTCTATTCAGGAGAATGGGGGACATAAGGCTCCAAATTATGTTGATGCTGCTCAATCTGAACAATTTTTCACAAGACAAAGCTATGATTCATCAGCTATTATACCTTCAGTTTCCGGGTCATCATCATCACCATCTGGGGGTCTTGCATGTGCAATAGCTGCCCTTGCAGAACAGCAACAAACGAGTGGGGAATCCTCCATCGATCCTGGTGGCAGTAATGTCTCAACTTTTACTATGGTTCCAGGCACTAGCAGGTTTTACAACAGAGTGGGTGGAGAATCTGAGAATTATCAGCCTGCAGTTAGCCTTTCTGAATTGTCAATCAATCACAGGATGGCTTTGACTCAAGATGAGAGAGAATGGAATGGTGAAACAACACAGTCAAGTTATGCAAGCTCCGACACAACCGAAGATCATGGCACTACTTCTTCATTACCGACATTGGATGAGATTGAGAGTGAACTTCAAAATGCCCCAGGCCATGTTGTTCCTGAGAGTTTTGAGGAGCAGATGATGCTGGCCATGGCTGTTTCTCTGGCTGAGGCCAGAGCTGTAACCAGTGGACATGGAATTTCATGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

46.39

Weight (kDa)

4.86

Isoelectric Point (pI)

70.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17145 AT1G17145 AT1G78420 AT1G78420
fragaria_vesca	FvH4_3g16610
malus_domestica	MD05G1208500.v1.1 MD10G1195000.v1.1
prunus_persica	Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1 Prupe.4G148900_v2.0.a1
pyrus_communis	pycom05g19440 pycom10g16870
rosa_chinensis	RchiOBHm_Chr5g0027751
rosa_laevigata	RLG00000033040
rosa_multiflora	Rmu_sc0013615.1_g000003 Rmu_sc0039701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051860
rosa_rugosa	Rorug05G0100700 Rorug05G0100800 Rorug05G0100900
rosa_samantha	Rh5AG195000 Rh5BG193300 Rh5CG213500 Rh5DG195300
rosa_wichuraiana	Rw5G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	909
Acc65I	GGTACC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	2 cut(s)	536, 590
AclWI	GGATC	5 cut(s)	93, 171, 617, 636, 863
AcoI	YGGCCR	1 cut(s)	1185
AcsI	RAATTY	4 cut(s)	271, 460, 549, 1236
AcuI	CTGAAG	2 cut(s)	407, 756
AfaI	GTAC	2 cut(s)	241, 483
AfiI	CCNNNNNNNGG	2 cut(s)	596, 803
AgsI	TTSAA	7 cut(s)	116, 121, 170, 276, 374, 573, 1133
AjnI	CCWGG	4 cut(s)	139, 871, 907, 1141
AluBI	AGCT	9 cut(s)	106, 124, 421, 504, 747, 761, 824, 1062, 1217
AluI	AGCT	9 cut(s)	106, 124, 421, 504, 747, 761, 824, 1062, 1217
Alw26I	GTCTC	4 cut(s)	19, 68, 209, 892
AlwI	GGATC	5 cut(s)	93, 171, 617, 636, 863
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	3 cut(s)	1144, 1185, 1209
ApeKI	GCWGC	2 cut(s)	713, 824
ApoI	RAATTY	4 cut(s)	271, 460, 549, 1236
Asp718I	GGTACC	1 cut(s)	481
AsuC2I	CCSGG	2 cut(s)	597, 781
AsuHPI	GGTGA	3 cut(s)	43, 786, 1046
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	1187
BanI	GGYRCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	1206
BbvI	GCAGC	2 cut(s)	700, 811
BccI	CCATC	4 cut(s)	526, 805, 872, 994
BciT130I	CCWGG	4 cut(s)	141, 873, 909, 1143
BcnI	CCSGG	2 cut(s)	597, 781
BcoDI	GTCTC	4 cut(s)	19, 68, 209, 892
BfaI	CTAG	2 cut(s)	468, 915
BfmI	CTRYAG	1 cut(s)	963
BfuAI	ACCTGC	1 cut(s)	909
BisI	GCNGC	2 cut(s)	714, 825
BlsI	GCNGC	2 cut(s)	715, 826
Bme1390I	CCNGG	6 cut(s)	141, 597, 781, 873, 909, 1143
BmiI	GGNNCC	3 cut(s)	483, 696, 906
BmrFI	CCNGG	6 cut(s)	141, 597, 781, 873, 909, 1143
BmsI	GCATC	2 cut(s)	700, 1170
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	1206
BpuEI	CTTGAG	1 cut(s)	996
BpuMI	CCSGG	2 cut(s)	597, 781
Bsa29I	ATCGAT	1 cut(s)	867
BsaBI	GATNNNNATC	2 cut(s)	84, 627
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	1141, 1188
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 803
Bse1I	ACTGG	1 cut(s)	1224
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	84, 627
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	4 cut(s)	141, 873, 909, 1143
BseCI	ATCGAT	1 cut(s)	867
BseDI	CCNNGG	2 cut(s)	1141, 1188
BseGI	GGATG	5 cut(s)	433, 499, 619, 1005, 1117
BseJI	GATNNNNATC	2 cut(s)	84, 627
BseLI	CCNNNNNNNGG	2 cut(s)	596, 803
BseMII	CTCAG	7 cut(s)	71, 112, 234, 569, 939, 1149, 1197
BseNI	ACTGG	1 cut(s)	1224
BseRI	GAGGAG	2 cut(s)	365, 1184
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	700, 811
BshFI	GGCC	3 cut(s)	1146, 1187, 1211
BshNI	GGYRCC	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	867
BsiSI	CCGG	3 cut(s)	596, 626, 780
BslFI	GGGAC	2 cut(s)	251, 699
BslI	CCNNNNNNNGG	2 cut(s)	596, 803
BsmAI	GTCTC	4 cut(s)	19, 68, 209, 892
BsmFI	GGGAC	2 cut(s)	251, 699
BsmI	GAATGC	3 cut(s)	179, 411, 447
BsnI	GGCC	3 cut(s)	1146, 1187, 1211
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
Bsp19I	CCATGG	1 cut(s)	1188
BspACI	CCGC	2 cut(s)	536, 590
BspANI	GGCC	3 cut(s)	1146, 1187, 1211
BspCNI	CTCAG	7 cut(s)	70, 111, 235, 568, 940, 1150, 1198
BspDI	ATCGAT	1 cut(s)	867
BspEI	TCCGGA	1 cut(s)	625
BspLI	GGNNCC	3 cut(s)	483, 696, 906
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	1 cut(s)	909
BspPI	GGATC	5 cut(s)	93, 171, 617, 636, 863
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	1224
BssECI	CCNNGG	2 cut(s)	1141, 1188
BssMI	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
BssNAI	GTATAC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	1188
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	4 cut(s)	141, 873, 909, 1143
Bst4CI	ACNGT	2 cut(s)	514, 1047
Bst6I	CTCTTC	2 cut(s)	426, 537
BstAPI	GCANNNNNTGC	2 cut(s)	824, 1180
BstC8I	GCNNGC	4 cut(s)	126, 963, 1060, 1185
BstDEI	CTNAG	8 cut(s)	57, 98, 243, 345, 555, 948, 1158, 1206
BstDSI	CCRYGG	1 cut(s)	1188
BstF5I	GGATG	5 cut(s)	433, 499, 619, 1005, 1117
BstKTI	GATC	7 cut(s)	88, 166, 215, 625, 631, 871, 1081
BstMAI	GTCTC	4 cut(s)	19, 68, 209, 892
BstMBI	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 231, 300, 824, 830, 1180
BstNI	CCWGG	4 cut(s)	141, 873, 909, 1143
BstNSI	RCATGY	1 cut(s)	816
BstSCI	CCNGG	6 cut(s)	139, 595, 779, 871, 907, 1141
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	700, 811
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	163, 628
BstYI	RGATCY	2 cut(s)	163, 628
BstZ17I	GTATAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	1146, 1187, 1211
BsuTUI	ATCGAT	1 cut(s)	867
BtgI	CCRYGG	1 cut(s)	1188
BtsCI	GGATG	5 cut(s)	433, 499, 619, 1005, 1117
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	296, 1231
BveI	ACCTGC	1 cut(s)	909
Cac8I	GCNNGC	4 cut(s)	126, 963, 1060, 1185
ClaI	ATCGAT	1 cut(s)	867
Csp6I	GTAC	2 cut(s)	240, 482
CviQI	GTAC	2 cut(s)	240, 482
DdeI	CTNAG	8 cut(s)	57, 98, 243, 345, 555, 948, 1158, 1206
DpnI	GATC	7 cut(s)	87, 165, 214, 624, 630, 870, 1080
DpnII	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	1185
Eam1104I	CTCTTC	2 cut(s)	426, 537
EarI	CTCTTC	2 cut(s)	426, 537
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	1188
Eco31I	GGTCTC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	407, 756
Eco81I	CCTNAGG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	4 cut(s)	139, 871, 907, 1141
EcoT14I	CCWWGG	1 cut(s)	1188
ErhI	CCWWGG	1 cut(s)	1188
FaqI	GGGAC	2 cut(s)	251, 699
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	714, 825
FokI	GGATG	5 cut(s)	440, 506, 626, 1012, 1124
Fsp4HI	GCNGC	2 cut(s)	714, 825
FspBI	CTAG	2 cut(s)	468, 915
GluI	GCNGC	2 cut(s)	714, 825
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	1146, 1187, 1211
HapII	CCGG	3 cut(s)	596, 626, 780
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	6 cut(s)	384, 560, 752, 857, 944, 1009
HpaII	CCGG	3 cut(s)	596, 626, 780
HphI	GGTGA	3 cut(s)	43, 786, 1046
Hpy166II	GTNNAC	3 cut(s)	48, 1127, 1229
Hpy188I	TCNGA	4 cut(s)	724, 949, 979, 1066
Hpy8I	GTNNAC	3 cut(s)	48, 1127, 1229
HpyAV	CCTTC	2 cut(s)	349, 780
HpyCH4III	ACNGT	2 cut(s)	514, 1047
HpyCH4V	TGCA	9 cut(s)	156, 225, 303, 445, 812, 818, 833, 965, 1058
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 231, 300, 824, 830, 1180
HpyF3I	CTNAG	8 cut(s)	57, 98, 243, 345, 555, 948, 1158, 1206
Kpn2I	TCCGGA	1 cut(s)	625
KpnI	GGTACC	1 cut(s)	485
Kzo9I	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
LmnI	GCTCC	5 cut(s)	133, 599, 700, 1067, 1171
Lsp1109I	GCAGC	2 cut(s)	700, 811
LweI	GCATC	2 cut(s)	700, 1170
MaeI	CTAG	2 cut(s)	468, 915
MaeIII	GTNAC	2 cut(s)	508, 1219
MalI	GATC	7 cut(s)	87, 165, 214, 624, 630, 870, 1080
MboI	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	163, 628
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	1187
MluNI	TGGCCA	1 cut(s)	1187
MlyI	GAGTC	2 cut(s)	393, 1003
MmeI	TCCRAC	1 cut(s)	1089
MnlI	CCTC	8 cut(s)	66, 343, 538, 603, 604, 871, 1162, 1201
Mox20I	TGGCCA	1 cut(s)	1187
MroI	TCCGGA	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	1187
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	1187
MspI	CCGG	3 cut(s)	596, 626, 780
MspR9I	CCNGG	6 cut(s)	141, 597, 781, 873, 909, 1143
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	3 cut(s)	179, 411, 447
MvaI	CCWGG	4 cut(s)	141, 873, 909, 1143
MwoI	GCNNNNNNNGC	6 cut(s)	183, 231, 300, 824, 830, 1180
NciI	CCSGG	2 cut(s)	597, 781
NcoI	CCATGG	1 cut(s)	1188
NdeII	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
NlaIV	GGNNCC	3 cut(s)	483, 696, 906
NspI	RCATGY	1 cut(s)	816
PctI	GAATGC	3 cut(s)	179, 411, 447
PfeI	GAWTC	4 cut(s)	560, 752, 857, 944
PfoI	TCCNGGA	2 cut(s)	139, 595
PkrI	GCNGC	2 cut(s)	715, 826
PleI	GAGTC	2 cut(s)	392, 1003
PpsI	GAGTC	2 cut(s)	392, 1003
Psp6I	CCWGG	4 cut(s)	139, 871, 907, 1141
PspGI	CCWGG	4 cut(s)	139, 871, 907, 1141
PspN4I	GGNNCC	3 cut(s)	483, 696, 906
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	2 cut(s)	163, 628
RsaI	GTAC	2 cut(s)	241, 483
RsaNI	GTAC	2 cut(s)	240, 482
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	2 cut(s)	714, 825
Sau3AI	GATC	7 cut(s)	85, 163, 212, 622, 628, 868, 1078
SchI	GAGTC	2 cut(s)	393, 1003
ScrFI	CCNGG	6 cut(s)	141, 597, 781, 873, 909, 1143
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	700, 1170
SfcI	CTRYAG	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	1011
SmoI	CTYRAG	1 cut(s)	1011
SsiI	CCGC	2 cut(s)	536, 590
SspMI	CTAG	2 cut(s)	468, 915
StyD4I	CCNGG	6 cut(s)	139, 595, 779, 871, 907, 1141
StyI	CCWWGG	1 cut(s)	1188
TaaI	ACNGT	2 cut(s)	514, 1047
TaqI	TCGA	1 cut(s)	867
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	4 cut(s)	560, 752, 857, 944
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	2 cut(s)	296, 1231
TseI	GCWGC	2 cut(s)	713, 824
TspRI	CASTG	2 cut(s)	296, 1231
XapI	RAATTY	4 cut(s)	271, 460, 549, 1236
XceI	RCATGY	1 cut(s)	816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	468, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.