RLG00000033040

cellular response to glucose starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007122
Physical Location & Seq
Reverse (-)
22470180 .. 22474426
4247 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033040

Sequence Viewer

Length: 1257 bp
ATGGGTAATAAACTCGGAAAAAGGAGACAGGTGATTGATGAGAAGTATACAAGGCCTCAGGGTCTATACCACCATAAAGATGTGGATCATAAGAAACTCAGGAAGCTCATACTTGAATCTAAGCTTGCTCCATGCTATCCTGGACTTGAAGACTGCATTCGGGATCTTGAAGAATGCCCAATTTGCTTTCTGTTTTATCCAAGTCTCAACAGATCAAGATGTTGCATGAAAGGCATTTGTACAGAGTGTTTTTTGCAGATGAAAGTGCCCAATTCAACTCGTCCTACGCAGTGCCCTTTCTGCAAAACCACCAATTATGCTGTGGAGTTTCGGGGTGTAAAATCTAAGGAGGAGAAGGGCCAGGAACAAATTGAAGAACAACGAGTCATTGAAGCAAAAATTAGAATGCGACAGCAAGAACTTCAGGATGAAGAGGAAAGAATGCAAAATAGACAACTAAATTCTTCTAGCAGAAACATGGCACCAATCGGGGATGAATACGGCTCTGTAACTGTTCCATCTTCCACTTATCCTGCGGAAGGAGAGGAAGTCATTTCTTCTCAGGATTCATGTGCTACAGTGTTTAGACCAACTCCACCTCCGGGAGCATACAGGGAGGATGAACTTGATCTGGATCTTGACGATATAATGCTCATGGAAGCAATTTGGCTTTCTATAAAGGAGAATGGGAGACATAAGGCTCCAACTTATGTTGACGCTGCTCGATCTGAACAATTTGTCACAAGACAAAGCTATGACTCATCAGCCATTATACCTTCAGTTTCCGGGTCATCATCATCCCCATCTGGGGGTCTTGCTTGTGCAATAGCTGCCCTTGCAGAACGGCAACAAACAAGTGGGGAATCCTCCGTTGATCCTGGTGGCAATAATGTATCGACTTTTAATATGGTTCCAGGCACTAGCAGGTTTTACAACAGGGTGGATGGAGAATCTGAGAATTATCAGCCTGCAGTTAGCCTTTCTGAATTGTCAATCGATCACGGGACGTCATCGACTCAAGATGAGAGAGAATGGAATGGTGATACTACGCGGTCAAGTTATGCAAGCTCTGACACAACCGAAGATGCTGGCACTACTTCTGCATTACCGACCTCGGATGAGATTGAGGGTGACCTTCAAAATGCCTCAGGCCACATCGTTCCTGATAGTTTTGAGGAGCAGATGATGCTGGCCATGGCTGTTTCTCTGGCTGAGGCGACAGCTGTGACTAGTGGACCTGGAGTTTCGTGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

46.2

Weight (kDa)

4.78

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 915
AccB1I GGYRCC 1 cut(s) 481
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 1051
AciI CCGC 2 cut(s) 536, 1051
AclWI GGATC 4 cut(s) 93, 171, 642, 869
AcoI YGGCCR 1 cut(s) 1191
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 407, 762
AcyI GRCGYC 1 cut(s) 1007
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 5 cut(s) 539, 602, 807, 808, 809
AgsI TTSAA 7 cut(s) 116, 149, 170, 276, 374, 392, 1139
AhlI ACTAGT 1 cut(s) 1229
AjnI CCWGG 5 cut(s) 139, 360, 877, 913, 1237
AluBI AGCT 6 cut(s) 106, 124, 753, 830, 1068, 1223
AluI AGCT 6 cut(s) 106, 124, 753, 830, 1068, 1223
Alw26I GTCTC 3 cut(s) 19, 209, 685
AlwI GGATC 4 cut(s) 93, 171, 642, 869
AoxI GGCC 4 cut(s) 53, 358, 1150, 1191
ApeKI GCWGC 2 cut(s) 719, 830
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 358, 1235
AsuC2I CCSGG 2 cut(s) 603, 787
AsuHPI GGTGA 3 cut(s) 43, 1052, 1142
AvaII GGWCC 1 cut(s) 1235
AxyI CCTNAGG 2 cut(s) 57, 1147
BaeGI GKGCMC 2 cut(s) 270, 296
BalI TGGCCA 1 cut(s) 1193
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 1212
BbvI GCAGC 2 cut(s) 706, 817
BccI CCATC 3 cut(s) 526, 811, 938
BceAI ACGGC 2 cut(s) 517, 860
BciT130I CCWGG 5 cut(s) 141, 362, 879, 915, 1239
BcnI CCSGG 2 cut(s) 603, 787
BcoDI GTCTC 3 cut(s) 19, 209, 685
BcuI ACTAGT 1 cut(s) 1229
BfaI CTAG 3 cut(s) 468, 921, 1230
BfmI CTRYAG 2 cut(s) 576, 969
BfuAI ACCTGC 1 cut(s) 915
BisI GCNGC 2 cut(s) 720, 831
BlsI GCNGC 2 cut(s) 721, 832
Bme1390I CCNGG 7 cut(s) 141, 362, 603, 787, 879, 915, 1239
Bme18I GGWCC 1 cut(s) 1235
BmgT120I GGNCC 2 cut(s) 358, 1235
BmiI GGNNCC 3 cut(s) 483, 702, 912
BmrFI CCNGG 7 cut(s) 141, 362, 603, 787, 879, 915, 1239
BmsI GCATC 2 cut(s) 1075, 1176
BpiI GAAGAC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 1212
BpuEI CTTGAG 1 cut(s) 1002
BpuMI CCSGG 2 cut(s) 603, 787
Bsa29I ATCGAT 1 cut(s) 996
BsaBI GATNNNNATC 2 cut(s) 84, 633
BsaHI GRCGYC 1 cut(s) 1007
BsaJI CCNNGG 2 cut(s) 1113, 1194
BsaXI ACNNNNNCTCC 4 cut(s) 534, 564, 583, 613
Bsc4I CCNNNNNNNGG 5 cut(s) 539, 602, 807, 808, 809
Bse21I CCTNAGG 2 cut(s) 57, 1147
Bse8I GATNNNNATC 2 cut(s) 84, 633
BseBI CCWGG 5 cut(s) 141, 362, 879, 915, 1239
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 2 cut(s) 1113, 1194
BseGI GGATG 6 cut(s) 433, 499, 625, 797, 949, 1123
BseJI GATNNNNATC 2 cut(s) 84, 633
BseLI CCNNNNNNNGG 5 cut(s) 539, 602, 807, 808, 809
BseMII CTCAG 6 cut(s) 71, 112, 575, 945, 1161, 1203
BseRI GAGGAG 2 cut(s) 365, 1190
BseSI GKGCMC 2 cut(s) 270, 296
BseXI GCAGC 2 cut(s) 706, 817
Bsh1236I CGCG 1 cut(s) 1051
BshFI GGCC 4 cut(s) 55, 360, 1152, 1193
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 996
BsiSI CCGG 2 cut(s) 602, 786
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 5 cut(s) 539, 602, 807, 808, 809
BsmAI GTCTC 3 cut(s) 19, 209, 685
BsmFI GGGAC 1 cut(s) 1018
BsmI GAATGC 4 cut(s) 156, 179, 411, 447
BsnI GGCC 4 cut(s) 55, 360, 1152, 1193
Bsp1286I GDGCHC 2 cut(s) 270, 296
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
Bsp19I CCATGG 1 cut(s) 1194
BspACI CCGC 2 cut(s) 536, 1051
BspANI GGCC 4 cut(s) 55, 360, 1152, 1193
BspCNI CTCAG 6 cut(s) 70, 111, 574, 946, 1160, 1204
BspDI ATCGAT 1 cut(s) 996
BspFNI CGCG 1 cut(s) 1051
BspLI GGNNCC 3 cut(s) 483, 702, 912
BspMAI CTGCAG 1 cut(s) 973
BspMI ACCTGC 1 cut(s) 915
BspPI GGATC 4 cut(s) 93, 171, 642, 869
BspT107I GGYRCC 1 cut(s) 481
BsrGI TGTACA 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 1113, 1194
BssMI GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
BssNAI GTATAC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 1007
BssT1I CCWWGG 1 cut(s) 1194
Bst1107I GTATAC 1 cut(s) 48
Bst2UI CCWGG 5 cut(s) 141, 362, 879, 915, 1239
Bst4CI ACNGT 2 cut(s) 514, 580
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 1007
BstAPI GCANNNNNTGC 2 cut(s) 830, 1186
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 5 cut(s) 126, 969, 1066, 1090, 1191
BstDEI CTNAG 8 cut(s) 57, 98, 120, 345, 561, 954, 1147, 1212
BstDSI CCRYGG 1 cut(s) 1194
BstEII GGTNACC 1 cut(s) 1130
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 6 cut(s) 433, 499, 625, 797, 949, 1123
BstFNI CGCG 1 cut(s) 1051
BstKTI GATC 8 cut(s) 88, 166, 215, 631, 637, 728, 877, 1000
BstMAI GTCTC 3 cut(s) 19, 209, 685
BstMBI GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
BstMWI GCNNNNNNNGC 6 cut(s) 183, 231, 300, 830, 836, 1186
BstNI CCWGG 5 cut(s) 141, 362, 879, 915, 1239
BstPI GGTNACC 1 cut(s) 1130
BstSCI CCNGG 7 cut(s) 139, 360, 601, 785, 877, 913, 1237
BstSFI CTRYAG 2 cut(s) 576, 969
BstSLI GKGCMC 2 cut(s) 270, 296
BstUI CGCG 1 cut(s) 1051
BstV1I GCAGC 2 cut(s) 706, 817
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 163, 634
BstYI RGATCY 2 cut(s) 163, 634
BstZ17I GTATAC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 996
Bsu36I CCTNAGG 2 cut(s) 57, 1147
BsuRI GGCC 4 cut(s) 55, 360, 1152, 1193
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 1 cut(s) 1194
BtsCI GGATG 6 cut(s) 433, 499, 625, 797, 949, 1123
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 296, 585
BveI ACCTGC 1 cut(s) 915
Cac8I GCNNGC 5 cut(s) 126, 969, 1066, 1090, 1191
Cfr13I GGNCC 2 cut(s) 358, 1235
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 240
CviAII CATG 6 cut(s) 132, 226, 478, 570, 655, 1195
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 8 cut(s) 57, 98, 120, 345, 561, 954, 1147, 1212
DpnI GATC 8 cut(s) 87, 165, 214, 630, 636, 727, 876, 999
DpnII GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
EaeI YGGCCR 1 cut(s) 1191
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 1194
Eco147I AGGCCT 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 1235
Eco57I CTGAAG 2 cut(s) 407, 762
Eco81I CCTNAGG 2 cut(s) 57, 1147
Eco91I GGTNACC 1 cut(s) 1130
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO65I GGTNACC 1 cut(s) 1130
EcoRII CCWGG 5 cut(s) 139, 360, 877, 913, 1237
EcoT14I CCWWGG 1 cut(s) 1194
ErhI CCWWGG 1 cut(s) 1194
FaeI CATG 6 cut(s) 135, 229, 481, 573, 658, 1198
FaqI GGGAC 1 cut(s) 1018
FatI CATG 6 cut(s) 131, 225, 477, 569, 654, 1194
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 720, 831
FokI GGATG 6 cut(s) 440, 506, 632, 784, 956, 1130
Fsp4HI GCNGC 2 cut(s) 720, 831
FspBI CTAG 3 cut(s) 468, 921, 1230
GluI GCNGC 2 cut(s) 720, 831
HaeIII GGCC 4 cut(s) 55, 360, 1152, 1193
HapII CCGG 2 cut(s) 602, 786
HgaI GACGC 1 cut(s) 725
Hin1I GRCGYC 1 cut(s) 1007
Hin1II CATG 6 cut(s) 135, 229, 481, 573, 658, 1198
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 7 cut(s) 116, 384, 566, 758, 863, 950, 1015
HpaII CCGG 2 cut(s) 602, 786
HphI GGTGA 3 cut(s) 43, 1052, 1142
Hpy166II GTNNAC 3 cut(s) 48, 715, 1235
Hpy188I TCNGA 6 cut(s) 17, 730, 955, 985, 1072, 1117
Hpy8I GTNNAC 3 cut(s) 48, 715, 1235
HpyAV CCTTC 4 cut(s) 349, 533, 786, 1145
HpyCH4III ACNGT 2 cut(s) 514, 580
HpyCH4IV ACGT 1 cut(s) 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 231, 300, 830, 836, 1186
HpyF3I CTNAG 8 cut(s) 57, 98, 120, 345, 561, 954, 1147, 1212
HpySE526I ACGT 1 cut(s) 1007
Hsp92I GRCGYC 1 cut(s) 1007
Hsp92II CATG 6 cut(s) 135, 229, 481, 573, 658, 1198
Kzo9I GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
LmnI GCTCC 4 cut(s) 133, 605, 706, 1177
Lsp1109I GCAGC 2 cut(s) 706, 817
LweI GCATC 2 cut(s) 1075, 1176
MaeI CTAG 3 cut(s) 468, 921, 1230
MaeII ACGT 1 cut(s) 1007
MaeIII GTNAC 4 cut(s) 508, 739, 1130, 1225
MalI GATC 8 cut(s) 87, 165, 214, 630, 636, 727, 876, 999
MboI GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
MboII GAAGA 8 cut(s) 161, 182, 386, 443, 456, 513, 549, 1094
MflI RGATCY 2 cut(s) 163, 634
MhlI GDGCHC 2 cut(s) 270, 296
MlsI TGGCCA 1 cut(s) 1193
MluNI TGGCCA 1 cut(s) 1193
MlyI GAGTC 3 cut(s) 393, 752, 1009
MmeI TCCRAC 1 cut(s) 728
Mox20I TGGCCA 1 cut(s) 1193
MscI TGGCCA 1 cut(s) 1193
MseI TTAA 1 cut(s) 903
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 1193
MspA1I CMGCKG 1 cut(s) 1223
MspI CCGG 2 cut(s) 602, 786
MspR9I CCNGG 7 cut(s) 141, 362, 603, 787, 879, 915, 1239
Mva1269I GAATGC 4 cut(s) 156, 179, 411, 447
MvaI CCWGG 5 cut(s) 141, 362, 879, 915, 1239
MvnI CGCG 1 cut(s) 1051
MwoI GCNNNNNNNGC 6 cut(s) 183, 231, 300, 830, 836, 1186
NciI CCSGG 2 cut(s) 603, 787
NcoI CCATGG 1 cut(s) 1194
NdeII GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
NlaIII CATG 6 cut(s) 135, 229, 481, 573, 658, 1198
NlaIV GGNNCC 3 cut(s) 483, 702, 912
NmuCI GTSAC 3 cut(s) 739, 1130, 1225
PceI AGGCCT 1 cut(s) 55
PctI GAATGC 4 cut(s) 156, 179, 411, 447
PfeI GAWTC 4 cut(s) 116, 566, 863, 950
PfoI TCCNGGA 2 cut(s) 139, 601
PkrI GCNGC 2 cut(s) 721, 832
PleI GAGTC 3 cut(s) 392, 752, 1009
PpsI GAGTC 3 cut(s) 392, 752, 1009
Psp6I CCWGG 5 cut(s) 139, 360, 877, 913, 1237
PspEI GGTNACC 1 cut(s) 1130
PspGI CCWGG 5 cut(s) 139, 360, 877, 913, 1237
PspN4I GGNNCC 3 cut(s) 483, 702, 912
PspPI GGNCC 2 cut(s) 358, 1235
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 2 cut(s) 163, 634
PvuII CAGCTG 1 cut(s) 1223
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 903
SatI GCNGC 2 cut(s) 720, 831
Sau3AI GATC 8 cut(s) 85, 163, 212, 628, 634, 725, 874, 997
Sau96I GGNCC 2 cut(s) 358, 1235
SchI GAGTC 3 cut(s) 393, 752, 1009
ScrFI CCNGG 7 cut(s) 141, 362, 603, 787, 879, 915, 1239
SduI GDGCHC 2 cut(s) 270, 296
SfaNI GCATC 2 cut(s) 1075, 1176
SfcI CTRYAG 2 cut(s) 576, 969
SinI GGWCC 1 cut(s) 1235
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
SpeI ACTAGT 1 cut(s) 1229
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 2 cut(s) 536, 1051
SspMI CTAG 3 cut(s) 468, 921, 1230
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 7 cut(s) 139, 360, 601, 785, 877, 913, 1237
StyI CCWWGG 1 cut(s) 1194
TaaI ACNGT 2 cut(s) 514, 580
TaiI ACGT 1 cut(s) 1010
TaqI TCGA 4 cut(s) 724, 896, 996, 1013
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 4 cut(s) 116, 566, 863, 950
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TscAI CASTG 2 cut(s) 296, 585
TseFI GTSAC 3 cut(s) 739, 1130, 1225
TseI GCWGC 2 cut(s) 719, 830
Tsp45I GTSAC 3 cut(s) 739, 1130, 1225
TspDTI ATGAA 6 cut(s) 242, 275, 444, 510, 558, 636
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 2 cut(s) 296, 585
VpaK11BI GGWCC 1 cut(s) 1235
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 3 cut(s) 468, 921, 1230
ZraI GACGTC 1 cut(s) 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.