Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Forward (+)

5867535 .. 5869436

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATGAAAGGGATCTCTTCAGTTTCTCAATCGATCAATTATAATCCATACATCGAATTCAATCGACCGCAGCTTCAGATCAGTACTGTGAATCCCAATCCAGCTCAATCTCGATTTTCCCGCCCTCGATCCCTCCGTGTTCTCTCACTCTCCGCCGATCCATCGGCAAATCGGAATCCTAAATCAGCCGTTGACGCACACGCGCCGCCACTGGTGGTTGTGGGATCTGCGAACGCCGATATCTATGTGGAGATCGAGAGATTACCCAAGGAAGGGGAAACGATTTCGGCCAAGACAGGGCAAACGCTCGCCGGAGGAAAAGGCGCGAATCAGGCGGCGTGTGGAGCGAAGCTAATGTATCCGACTTACTTCGTTGGTCGTTTGGGAGAGGACGCGCACGGGAAGCTAATAGCTGAGGCGTTGGGCGATGATGGGTGTGGGGTTCACTTGGACTACGTGAGATCTGTGAATAATGAGCCGACGGGACACGCGGTGGTGATGCTTCAGTCGGACGGTCAGAATTCGATCATTATCGTTGGTGGTGCAAATATGAAAGCTTGGCCTGAGATTATGAGCGATGATGATCTTGAGATTGTGAGGAATGCTGGTATTGTGCTTCTGCAAAGGGAGATCCCAGATTCCATCAATATTCAAGTTGCTAAGGCTGTGAAGAAAGCAGGTGTTCCAGTCATCCTTGATGTGGGAGGAATGGATACGCCTATACCAAATGAGCTATTGGATTCCATTGATATCTTGAGCCCCAATGAAACTGAGCTCAGTCGCTTGACAGGAATGCCAACTGAAACTTTTGAACAGATTAGCCAAGCTGTTGCAAAGTGCCATAAGTTGGGAGTTAAGCAAGTTCTAGTAAAACTCGGGTCCAAAGGATCTGCACTATTCATACAAGGGGAAAAACCAATCCAGCAGTCTATCATACCGGCTGCACAAGTGGTTGATACTACAGGAGCTGGGGATACTTTCACTGCAGCATTTGCAGTCGCTATGGTAGAGGGCAAGTCCCATGAGGAATGCTTGAGATTTGCTGCTGCAGCTGCCTCTCTTTGTGTCCAAGTAAAGGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCTCCTTAAATTTAGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

379

Amino Acids

40.19

Weight (kDa)

6.12

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	71 - 348	6.9e-57	pfkB family carbohydrate kinase
Phos_pyr_kin	PF08543	243 - 348	1.5e-11	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AarI	CACCTGC	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	668
AccB7I	CCANNNNNTGG	1 cut(s)	847
AccII	CGCG	4 cut(s)	203, 326, 395, 491
AciI	CCGC	6 cut(s)	68, 121, 153, 206, 335, 491
AclWI	GGATC	6 cut(s)	20, 123, 152, 232, 625, 895
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	56, 520, 1127
AcuI	CTGAAG	2 cut(s)	59, 488
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	6 cut(s)	272, 273, 297, 700, 847, 1075
AgsI	TTSAA	4 cut(s)	61, 653, 812, 1117
Alw21I	GWGCWC	1 cut(s)	777
AlwI	GGATC	6 cut(s)	20, 123, 152, 232, 625, 895
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	2 cut(s)	288, 560
ApeKI	GCWGC	7 cut(s)	70, 941, 986, 1043, 1046, 1049, 1052
ApoI	RAATTY	3 cut(s)	56, 520, 1127
AspLEI	GCGC	3 cut(s)	205, 326, 397
AspS9I	GGNCC	1 cut(s)	879
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	879
BanII	GRGCYC	2 cut(s)	761, 777
Bbv12I	GWGCWC	1 cut(s)	777
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	7 cut(s)	82, 928, 998, 1030, 1033, 1039, 1061
BccI	CCATC	3 cut(s)	169, 425, 650
BceAI	ACGGC	1 cut(s)	173
BciVI	GTATCC	3 cut(s)	369, 706, 967
BfaI	CTAG	1 cut(s)	866
BfmI	CTRYAG	3 cut(s)	960, 984, 1047
BfuAI	ACCTGC	1 cut(s)	668
BfuI	GTATCC	3 cut(s)	369, 706, 967
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	9 cut(s)	71, 206, 336, 942, 987, 1044, 1047, 1050, 1053
BlsI	GCNGC	9 cut(s)	72, 207, 337, 943, 988, 1045, 1048, 1051, 1054
BmcAI	AGTACT	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	879
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	1 cut(s)	879
BmiI	GGNNCC	1 cut(s)	880
BmsI	GCATC	1 cut(s)	489
Bpu10I	CCTNAGC	2 cut(s)	414, 660
BpuEI	CTTGAG	3 cut(s)	608, 775, 1054
Bsa29I	ATCGAT	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	457
BsaBI	GATNNNNATC	2 cut(s)	530, 582
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	6 cut(s)	272, 273, 297, 700, 847, 1075
Bse118I	RCCGGY	1 cut(s)	937
Bse1I	ACTGG	2 cut(s)	216, 686
Bse8I	GATNNNNATC	2 cut(s)	530, 582
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	690
BseJI	GATNNNNATC	2 cut(s)	530, 582
BseLI	CCNNNNNNNGG	6 cut(s)	272, 273, 297, 700, 847, 1075
BseMII	CTCAG	4 cut(s)	405, 555, 762, 790
BseNI	ACTGG	2 cut(s)	216, 686
BseXI	GCAGC	7 cut(s)	82, 928, 998, 1030, 1033, 1039, 1061
BseYI	CCCAGC	1 cut(s)	968
BsgI	GTGCAG	2 cut(s)	876, 927
Bsh1236I	CGCG	4 cut(s)	203, 326, 395, 491
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	290, 562
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	2 cut(s)	312, 938
BslFI	GGGAC	2 cut(s)	498, 1003
BslI	CCNNNNNNNGG	6 cut(s)	272, 273, 297, 700, 847, 1075
BsmFI	GGGAC	2 cut(s)	498, 1003
BsmI	GAATGC	3 cut(s)	607, 798, 1034
BsnI	GGCC	2 cut(s)	290, 562
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	761, 777
BspACI	CCGC	6 cut(s)	68, 121, 153, 206, 335, 491
BspANI	GGCC	2 cut(s)	290, 562
BspCNI	CTCAG	4 cut(s)	406, 556, 763, 789
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	4 cut(s)	203, 326, 395, 491
BspLI	GGNNCC	1 cut(s)	880
BspMAI	CTGCAG	2 cut(s)	988, 1051
BspMI	ACCTGC	1 cut(s)	668
BspPI	GGATC	6 cut(s)	20, 123, 152, 232, 625, 895
BsrFI	RCCGGY	1 cut(s)	937
BsrI	ACTGG	2 cut(s)	216, 686
BssAI	RCCGGY	1 cut(s)	937
BssECI	CCNNGG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	88, 515
Bst6I	CTCTTC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	309, 1094
BstDEI	CTNAG	5 cut(s)	414, 564, 660, 771, 776
BstF5I	GGATG	1 cut(s)	690
BstFNI	CGCG	4 cut(s)	203, 326, 395, 491
BstHHI	GCGC	3 cut(s)	205, 326, 397
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 332, 344, 403, 992, 1049, 1052
BstNSI	RCATGY	1 cut(s)	1096
BstSFI	CTRYAG	3 cut(s)	960, 984, 1047
BstUI	CGCG	4 cut(s)	203, 326, 395, 491
BstV1I	GCAGC	7 cut(s)	82, 928, 998, 1030, 1033, 1039, 1061
BstX2I	RGATCY	5 cut(s)	12, 224, 461, 630, 887
BstYI	RGATCY	5 cut(s)	12, 224, 461, 630, 887
Bsu15I	ATCGAT	1 cut(s)	32
BsuI	GTATCC	3 cut(s)	369, 706, 967
BsuRI	GGCC	2 cut(s)	290, 562
BsuTUI	ATCGAT	1 cut(s)	32
BtgZI	GCGATG	2 cut(s)	441, 591
BtsCI	GGATG	1 cut(s)	690
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	209, 981
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	2 cut(s)	309, 1094
CaiI	CAGNNNCTG	1 cut(s)	968
CfoI	GCGC	3 cut(s)	205, 326, 397
Cfr10I	RCCGGY	1 cut(s)	937
Cfr13I	GGNCC	1 cut(s)	879
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	2 cut(s)	203, 401
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	2 cut(s)	1022, 1093
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	5 cut(s)	414, 564, 660, 771, 776
DraIII	CACNNNGTG	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	775
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	761, 777
Eco32I	GATATC	2 cut(s)	241, 751
Eco47I	GGWCC	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	775
Eco57I	CTGAAG	2 cut(s)	59, 488
Eco88I	CYCGRG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	775
EcoRI	GAATTC	2 cut(s)	56, 520
EcoRV	GATATC	2 cut(s)	241, 751
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	761, 777
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	1025, 1096
FaqI	GGGAC	2 cut(s)	498, 1003
FatI	CATG	2 cut(s)	1021, 1092
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	9 cut(s)	71, 206, 336, 942, 987, 1044, 1047, 1050, 1053
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	2 cut(s)	761, 777
Fsp4HI	GCNGC	9 cut(s)	71, 206, 336, 942, 987, 1044, 1047, 1050, 1053
FspBI	CTAG	1 cut(s)	866
GlaI	GCGC	3 cut(s)	204, 325, 396
GluI	GCNGC	9 cut(s)	71, 206, 336, 942, 987, 1044, 1047, 1050, 1053
GsaI	CCCAGC	1 cut(s)	972
HaeIII	GGCC	2 cut(s)	290, 562
HapII	CCGG	2 cut(s)	312, 938
HgaI	GACGC	2 cut(s)	203, 401
HhaI	GCGC	3 cut(s)	205, 326, 397
Hin1II	CATG	2 cut(s)	1025, 1096
Hin6I	GCGC	3 cut(s)	203, 324, 395
HinP1I	GCGC	3 cut(s)	203, 324, 395
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	5 cut(s)	91, 175, 328, 638, 740
HpaII	CCGG	2 cut(s)	312, 938
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	2 cut(s)	193, 445
Hpy188I	TCNGA	5 cut(s)	78, 174, 363, 511, 519
Hpy188III	TCNNGA	4 cut(s)	111, 256, 587, 754
Hpy8I	GTNNAC	2 cut(s)	193, 445
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	88, 515
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	9 cut(s)	545, 622, 833, 893, 944, 986, 995, 1049, 1082
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 332, 344, 403, 992, 1049, 1052
HpyF3I	CTNAG	5 cut(s)	414, 564, 660, 771, 776
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	1025, 1096
HspAI	GCGC	3 cut(s)	203, 324, 395
LmnI	GCTCC	3 cut(s)	344, 965, 1125
Lsp1109I	GCAGC	7 cut(s)	82, 928, 998, 1030, 1033, 1039, 1061
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	1 cut(s)	456
MboII	GAAGA	2 cut(s)	9, 682
MflI	RGATCY	5 cut(s)	12, 224, 461, 630, 887
MhlI	GDGCHC	2 cut(s)	761, 777
MluCI	AATT	4 cut(s)	37, 56, 520, 1127
MmeI	TCCRAC	2 cut(s)	386, 489
MseI	TTAA	2 cut(s)	855, 1125
MspA1I	CMGCKG	1 cut(s)	1052
MspI	CCGG	2 cut(s)	312, 938
Mva1269I	GAATGC	3 cut(s)	607, 798, 1034
MvnI	CGCG	4 cut(s)	203, 326, 395, 491
MwoI	GCNNNNNNNGC	7 cut(s)	194, 332, 344, 403, 992, 1049, 1052
NlaIII	CATG	2 cut(s)	1025, 1096
NlaIV	GGNNCC	1 cut(s)	880
NspI	RCATGY	1 cut(s)	1096
PaeI	GCATGC	1 cut(s)	1096
PaqCI	CACCTGC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PctI	GAATGC	3 cut(s)	607, 798, 1034
PfeI	GAWTC	5 cut(s)	91, 175, 328, 638, 740
PflMI	CCANNNNNTGG	1 cut(s)	847
PkrI	GCNGC	9 cut(s)	72, 207, 337, 943, 988, 1045, 1048, 1051, 1054
Ppu21I	YACGTR	1 cut(s)	457
PsiI	TTATAA	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	968
PspN4I	GGNNCC	1 cut(s)	880
PspPI	GGNCC	1 cut(s)	879
PstI	CTGCAG	2 cut(s)	988, 1051
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	5 cut(s)	12, 224, 461, 630, 887
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	777
SaqAI	TTAA	2 cut(s)	855, 1125
SatI	GCNGC	9 cut(s)	71, 206, 336, 942, 987, 1044, 1047, 1050, 1053
Sau96I	GGNCC	1 cut(s)	879
ScaI	AGTACT	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	761, 777
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	3 cut(s)	960, 984, 1047
SinI	GGWCC	1 cut(s)	879
SmlI	CTYRAG	3 cut(s)	587, 754, 1033
SmoI	CTYRAG	3 cut(s)	587, 754, 1033
SphI	GCATGC	1 cut(s)	1096
Sse9I	AATT	4 cut(s)	37, 56, 520, 1127
SsiI	CCGC	6 cut(s)	68, 121, 153, 206, 335, 491
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	866
SstI	GAGCTC	1 cut(s)	777
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	88, 515
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	7 cut(s)	32, 54, 64, 112, 127, 255, 524
TaqII	GACCGA	1 cut(s)	1116
TasI	AATT	4 cut(s)	37, 56, 520, 1127
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	2 cut(s)	208, 338
TfiI	GAWTC	5 cut(s)	91, 175, 328, 638, 740
Tru1I	TTAA	2 cut(s)	855, 1125
Tru9I	TTAA	2 cut(s)	855, 1125
TscAI	CASTG	2 cut(s)	216, 988
TseI	GCWGC	7 cut(s)	70, 941, 986, 1043, 1046, 1049, 1052
TspDTI	ATGAA	4 cut(s)	20, 566, 780, 889
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	216, 988
Van91I	CCANNNNNTGG	1 cut(s)	847
VpaK11BI	GGWCC	1 cut(s)	879
XapI	RAATTY	3 cut(s)	56, 520, 1127
XceI	RCATGY	1 cut(s)	1096
XspI	CTAG	1 cut(s)	866
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.