Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Forward (+)

11094449 .. 11098877

Gene Structure 4429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17420.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGTTCGATGAGAGCAATAGCATCTTCACCATCCCAACAATGGGACTCCAAACTCCAAACCCATCTCCCAAACGCATCAAACAAACCAATCAACACCAACCCAAATCTCCAATTTAAACCCACAAGACACCCACTTCCCTGCTTCTCCCTAAACTCCTCAAAATCCCAGACCCCACTGACCCCAATCAGCCCCACAACCCCACCACTTGTGGTGGTGGGCTCAGCCAATGCAGACATCTATGTAGAGATTGAGAGGCTCCCCAAGAAGGGTGAGACCATCTCAGCCAAAACTGGCCAGACCCTGGCTGGGGGCAAAGGAGCCAACCAGGCTGCCTGTGGTGGCAAGCTGGCTTACCCAACTTACTTTGTGGGCCAGGTGGGTGAGGATGCCCATGGGAAACTTGTCACCGAGGCCCTTAGAGGTGGTGGGGTTCATTTAGATCACCTGAGTAGTGTGGGTGGGGCACCCACTGGGCATGCTGTGGTCATGTTGCAGGGTGATGGGCAGAACTCTATTATCATTGTGGGTGGTGCCAACATGAGCTGTTGGCCTGAGAGGCTGAGTGATGAGGATTTAAGGGTTGTGAGGAGTGCTGGGATTGTTTTGCTTCAGAGGGAGGTTCCGGAAGAGGTCAACATTCAGGTTGCCAAGGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCTGGAGGAATGGATGCACCAATCTCCCAGGAGCTATTGAACTATGTTGATATTTTTAGCCCAAATGAAACTGAGCTTGGTCGTTTGACAGGAATGCCAACCGAAAGCTTTGAACATATTAGTAAGGCTGTGGCCAAATGCCATAAAATGGGTGTTAGGCAAGTCCTGGTAAAACTTGGGCACAAAGGATCTGCTCTATTTGTAGAAGGCGAAGAACCACTTAAACAACCTATCATATCTGCTGCGAAAGTACTTGATACTACTGGAGCTGGTGATACATTTACAGCCTCTTTTGCGGTTGCTCTTGTGGAGGGCAAGTCCAAAAAGGAATGCCTGAGATTTGCAGGTGAAGGGAGCCATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

352

Amino Acids

36.87

Weight (kDa)

7.15

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	70 - 351	1.3e-58	pfkB family carbohydrate kinase
Phos_pyr_kin	PF08543	238 - 345	6.6e-11	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	659, 1025
Acc36I	ACCTGC	2 cut(s)	659, 1025
AccB1I	GGYRCC	2 cut(s)	466, 533
AccB7I	CCANNNNNTGG	2 cut(s)	304, 838
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	1 cut(s)	986
AclWI	GGATC	1 cut(s)	886
AcoI	YGGCCR	2 cut(s)	295, 822
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	675, 942
AfiI	CCNNNNNNNGG	8 cut(s)	42, 43, 268, 269, 304, 309, 310, 838
AgsI	TTSAA	2 cut(s)	730, 803
AjnI	CCWGG	5 cut(s)	303, 327, 375, 717, 855
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	6 cut(s)	349, 546, 724, 766, 798, 959
AluI	AGCT	6 cut(s)	349, 546, 724, 766, 798, 959
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	886
AlwNI	CAGNNNCTG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	5 cut(s)	295, 373, 414, 551, 822
ApeKI	GCWGC	3 cut(s)	332, 656, 932
AspS9I	GGNCC	2 cut(s)	373, 415
AsuHPI	GGTGA	8 cut(s)	21, 284, 395, 400, 437, 512, 974, 1049
BaeGI	GKGCMC	2 cut(s)	469, 873
BalI	TGGCCA	2 cut(s)	297, 824
BanI	GGYRCC	2 cut(s)	466, 533
BanII	GRGCYC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	319, 643, 919
BccI	CCATC	4 cut(s)	40, 72, 287, 497
BciT130I	CCWGG	5 cut(s)	305, 329, 377, 719, 857
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	1054
BfuAI	ACCTGC	2 cut(s)	659, 1025
BglI	GCCNNNNNGGC	2 cut(s)	329, 559
BisI	GCNGC	3 cut(s)	333, 657, 933
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	3 cut(s)	334, 658, 934
BmcAI	AGTACT	1 cut(s)	942
Bme1390I	CCNGG	5 cut(s)	305, 329, 377, 719, 857
BmgT120I	GGNCC	2 cut(s)	373, 415
BmiI	GGNNCC	6 cut(s)	260, 322, 468, 535, 624, 1046
BmrFI	CCNGG	5 cut(s)	305, 329, 377, 719, 857
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	5 cut(s)	32, 86, 379, 679, 694
BmuI	ACTGGG	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	2 cut(s)	714, 975
Bpu1102I	GCTNAGC	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	5 cut(s)	303, 394, 411, 651, 717
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	8 cut(s)	42, 43, 268, 269, 304, 309, 310, 838
Bse1I	ACTGG	4 cut(s)	298, 478, 677, 958
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	5 cut(s)	305, 329, 377, 719, 857
BseDI	CCNNGG	5 cut(s)	303, 394, 411, 651, 717
BseGI	GGATG	4 cut(s)	32, 394, 694, 709
BseLI	CCNNNNNNNGG	8 cut(s)	42, 43, 268, 269, 304, 309, 310, 838
BseMII	CTCAG	7 cut(s)	237, 297, 440, 546, 554, 753, 1016
BseNI	ACTGG	4 cut(s)	298, 478, 677, 958
BseRI	GAGGAG	2 cut(s)	148, 604
BseSI	GKGCMC	2 cut(s)	469, 873
BseXI	GCAGC	3 cut(s)	319, 643, 919
BseYI	CCCAGC	2 cut(s)	308, 596
BsgI	GTGCAG	1 cut(s)	687
BshFI	GGCC	5 cut(s)	297, 375, 416, 553, 824
BshNI	GGYRCC	2 cut(s)	466, 533
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	8 cut(s)	42, 43, 268, 269, 304, 309, 310, 838
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	2 cut(s)	789, 1025
BsnI	GGCC	5 cut(s)	297, 375, 416, 553, 824
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	224, 469, 873
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	2 cut(s)	442, 878
Bsp1720I	GCTNAGC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	1 cut(s)	986
BspANI	GGCC	5 cut(s)	297, 375, 416, 553, 824
BspCNI	CTCAG	7 cut(s)	236, 296, 441, 547, 555, 754, 1017
BspEI	TCCGGA	1 cut(s)	625
BspLI	GGNNCC	6 cut(s)	260, 322, 468, 535, 624, 1046
BspMI	ACCTGC	2 cut(s)	659, 1025
BspPI	GGATC	1 cut(s)	886
BspT107I	GGYRCC	2 cut(s)	466, 533
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	4 cut(s)	298, 478, 677, 958
BssECI	CCNNGG	5 cut(s)	303, 394, 411, 651, 717
BssMI	GATC	2 cut(s)	442, 878
BssT1I	CCWWGG	2 cut(s)	394, 651
Bst2UI	CCWGG	5 cut(s)	305, 329, 377, 719, 857
Bst6I	CTCTTC	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	347, 351, 480
BstDEI	CTNAG	8 cut(s)	223, 283, 419, 449, 555, 563, 762, 1025
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	4 cut(s)	32, 394, 694, 709
BstKTI	GATC	2 cut(s)	445, 881
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	442, 878
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 559, 656, 665, 983
BstNI	CCWGG	5 cut(s)	305, 329, 377, 719, 857
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	5 cut(s)	303, 327, 375, 717, 855
BstSLI	GKGCMC	2 cut(s)	469, 873
BstV1I	GCAGC	3 cut(s)	319, 643, 919
BstX2I	RGATCY	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	878
BsuRI	GGCC	5 cut(s)	297, 375, 416, 553, 824
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	32, 394, 694, 709
BtsIMutI	CAGTG	2 cut(s)	176, 471
BveI	ACCTGC	2 cut(s)	659, 1025
Cac8I	GCNNGC	3 cut(s)	347, 351, 480
CaiI	CAGNNNCTG	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	373, 415
Csp6I	GTAC	2 cut(s)	674, 941
CviAII	CATG	4 cut(s)	395, 479, 490, 541
CviQI	GTAC	2 cut(s)	674, 941
DdeI	CTNAG	8 cut(s)	223, 283, 419, 449, 555, 563, 762, 1025
DpnI	GATC	2 cut(s)	444, 880
DpnII	GATC	2 cut(s)	442, 878
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	295, 822
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	394, 651
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	5 cut(s)	303, 327, 375, 717, 855
EcoT14I	CCWWGG	2 cut(s)	394, 651
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	394, 651
FaeI	CATG	4 cut(s)	398, 482, 493, 544
FaiI	YATR	9 cut(s)	243, 396, 480, 491, 542, 735, 807, 834, 926
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	394, 478, 489, 540
Fnu4HI	GCNGC	3 cut(s)	333, 657, 933
FokI	GGATG	4 cut(s)	19, 401, 701, 716
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	333, 657, 933
FspBI	CTAG	1 cut(s)	1054
GluI	GCNGC	3 cut(s)	333, 657, 933
GsaI	CCCAGC	2 cut(s)	312, 600
GsuI	CTGGAG	2 cut(s)	714, 975
HaeIII	GGCC	5 cut(s)	297, 375, 416, 553, 824
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	4 cut(s)	398, 482, 493, 544
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	8 cut(s)	21, 284, 395, 400, 437, 512, 974, 1049
Hpy166II	GTNNAC	2 cut(s)	637, 674
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	2 cut(s)	637, 674
HpyAV	CCTTC	3 cut(s)	262, 890, 1034
HpyCH4V	TGCA	5 cut(s)	233, 496, 668, 707, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 559, 656, 665, 983
HpyF3I	CTNAG	8 cut(s)	223, 283, 419, 449, 555, 563, 762, 1025
Hsp92II	CATG	4 cut(s)	398, 482, 493, 544
Kpn2I	TCCGGA	1 cut(s)	625
Kzo9I	GATC	2 cut(s)	442, 878
LmnI	GCTCC	5 cut(s)	264, 320, 721, 956, 1044
Lsp1109I	GCAGC	3 cut(s)	319, 643, 919
LweI	GCATC	5 cut(s)	32, 86, 379, 679, 694
MaeI	CTAG	1 cut(s)	1054
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	444, 880
MboI	GATC	2 cut(s)	442, 878
MboII	GAAGA	3 cut(s)	18, 641, 914
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	3 cut(s)	224, 469, 873
MlsI	TGGCCA	2 cut(s)	297, 824
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	2 cut(s)	297, 824
MlyI	GAGTC	1 cut(s)	41
Mox20I	TGGCCA	2 cut(s)	297, 824
MroI	TCCGGA	1 cut(s)	625
MscI	TGGCCA	2 cut(s)	297, 824
MseI	TTAA	3 cut(s)	117, 578, 912
Msp20I	TGGCCA	2 cut(s)	297, 824
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	5 cut(s)	305, 329, 377, 719, 857
Mva1269I	GAATGC	2 cut(s)	789, 1025
MvaI	CCWGG	5 cut(s)	305, 329, 377, 719, 857
MwoI	GCNNNNNNNGC	5 cut(s)	329, 559, 656, 665, 983
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	442, 878
NlaIII	CATG	4 cut(s)	398, 482, 493, 544
NlaIV	GGNNCC	6 cut(s)	260, 322, 468, 535, 624, 1046
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	482
PaeI	GCATGC	1 cut(s)	482
PaqCI	CACCTGC	2 cut(s)	659, 1025
PctI	GAATGC	2 cut(s)	789, 1025
PflMI	CCANNNNNTGG	2 cut(s)	304, 838
PkrI	GCNGC	3 cut(s)	334, 658, 934
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp6I	CCWGG	5 cut(s)	303, 327, 375, 717, 855
PspFI	CCCAGC	2 cut(s)	308, 596
PspGI	CCWGG	5 cut(s)	303, 327, 375, 717, 855
PspN4I	GGNNCC	6 cut(s)	260, 322, 468, 535, 624, 1046
PspPI	GGNCC	2 cut(s)	373, 415
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	2 cut(s)	675, 942
RsaNI	GTAC	2 cut(s)	674, 941
SaqAI	TTAA	3 cut(s)	117, 578, 912
SatI	GCNGC	3 cut(s)	333, 657, 933
Sau3AI	GATC	2 cut(s)	442, 878
Sau96I	GGNCC	2 cut(s)	373, 415
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	5 cut(s)	305, 329, 377, 719, 857
SduI	GDGCHC	3 cut(s)	224, 469, 873
SfaNI	GCATC	5 cut(s)	32, 86, 379, 679, 694
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	986
SspMI	CTAG	1 cut(s)	1054
StyD4I	CCNGG	5 cut(s)	303, 327, 375, 717, 855
StyI	CCWWGG	2 cut(s)	394, 651
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	113
TatI	WGTACW	1 cut(s)	940
Tru1I	TTAA	3 cut(s)	117, 578, 912
Tru9I	TTAA	3 cut(s)	117, 578, 912
TscAI	CASTG	2 cut(s)	183, 478
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	332, 656, 932
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	425, 771
TspRI	CASTG	2 cut(s)	183, 478
Van91I	CCANNNNNTGG	2 cut(s)	304, 838
XceI	RCATGY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	3 cut(s)	39, 305, 335
XspI	CTAG	1 cut(s)	1054
ZrmI	AGTACT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.