Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Forward (+)

22833885 .. 22838333

Gene Structure 4449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGAGCAATAGCGTTTTCACCCTCCCAACAATGGGACTCCAAAATCCAAACCCGTCTCCCAAATTCCTCACACACACCAATCAACACCAACCCAAATCTCCAATTCAAAACCACAAGACACCCACTTCCCTGTTTCTCCCTAGACTCATCAAAATCCCAAACCCCACTGACCCCAATCACCCCCACAACCCCACCCCTCGTGGTGGTGGGCTCAGCCAATGCAGACATCTATGTTGAGATTGATAGACTCCCCAAGGAGGGTGAGACCATCTCAGCCAAAACCGGCCAGACCCTGGCTGGTGGCAAAGGAGCCAACCAGGCTGCCTGTGGTGGCAAGCTGGCTTACCCAACCTACTTTGTGGGCCAGGTGGGTCAGGATGCCCATGGCAAACTGGTCACTGAGGCCCTCAGGGGTGGTGGGGTCCACCTGGATCACCTGACTAGTGTGGCTGCTGCACCCACTGGTCATGCTGTGGTGATGTTGCAGAGTGATGGGCAGAACTCCATCATCATTGTGGGTGGTGCCAACATGAGGTGTTGGCCTGAGAGGCTGAGTGATGAGGATTTGAGGGTTGTGAGGAGTGCTGGGATTGTTTTGCTTCAGAGGGAGATTCCAGAAGTGGTCAACATTCAGGTTGCAAAGGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCCGGAGGAATGGATACACCAATCTCCCAGGAGTTATTGAACTATGTTGATATTTTTAGCCCAAATGAAAGTGAGCTTGGTCGTTTGACAGGAATGCCGACTGAAAGCTTTGAACAGATTAGTAATGCCGTTGTCAAATGCCATAAAATGGGTGTTAAGCAAGTCCTAGTAAAACTTGGGGACAAAGGGTCTGCTCTATTTGTAGAAGGTGATGAACCAATTAAACAACCTGTCATATCTGCTGCGAAAGTACTTGATACTACTGGAGCCGGTGATACGTTTACTGCCTCTTTTGCTGTTGCTTTTGTGGAGGGCAAGTCCATAAAGGAATGCCTGAGATTTGCAGCTGCTGCCGCTTCTCTTTGTGTTCAAGTGAAGGGAGCCATTCCTAGCATGCCCGAGAGGAAATCAGTTTTGAATCTTCTTCAATCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

372

Amino Acids

39.27

Weight (kDa)

7.04

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	67 - 361	8.7e-63	pfkB family carbohydrate kinase
Phos_pyr_kin	PF08543	235 - 344	2.9e-10	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	2 cut(s)	295, 829
AciI	CCGC	1 cut(s)	1035
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	666, 933
AfiI	CCNNNNNNNGG	8 cut(s)	33, 34, 205, 259, 260, 295, 534, 829
AgsI	TTSAA	6 cut(s)	109, 721, 794, 1052, 1099, 1109
AhdI	GACNNNNNGTC	1 cut(s)	868
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	5 cut(s)	294, 318, 366, 429, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
AluBI	AGCT	4 cut(s)	340, 757, 789, 1028
AluI	AGCT	4 cut(s)	340, 757, 789, 1028
Alw26I	GTCTC	2 cut(s)	62, 260
AlwI	GGATC	1 cut(s)	441
AlwNI	CAGNNNCTG	2 cut(s)	295, 1031
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	4 cut(s)	286, 364, 405, 542
ApeKI	GCWGC	8 cut(s)	323, 452, 455, 647, 923, 1025, 1028, 1031
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	364, 406, 424
AsuHPI	GGTGA	7 cut(s)	12, 172, 275, 428, 490, 902, 965
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	200
BbvI	GCAGC	8 cut(s)	310, 439, 442, 634, 910, 1015, 1018, 1037
BccI	CCATC	3 cut(s)	278, 488, 515
BceAI	ACGGC	1 cut(s)	794
BciT130I	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BciVI	GTATCC	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	62, 260
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	4 cut(s)	143, 444, 848, 1071
BfuAI	ACCTGC	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	2 cut(s)	320, 550
BisI	GCNGC	9 cut(s)	324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	9 cut(s)	325, 454, 457, 649, 925, 1027, 1030, 1033, 1036
BmcAI	AGTACT	1 cut(s)	933
Bme1390I	CCNGG	5 cut(s)	296, 320, 368, 431, 710
Bme18I	GGWCC	1 cut(s)	424
BmeRI	GACNNNNNGTC	1 cut(s)	868
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	3 cut(s)	364, 406, 424
BmiI	GGNNCC	5 cut(s)	313, 425, 526, 949, 1063
BmrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 710
BmsI	GCATC	2 cut(s)	370, 670
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	1 cut(s)	966
Bpu1102I	GCTNAGC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	255, 294, 385, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	983, 1013
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 34, 205, 259, 260, 295, 534, 829
Bse118I	RCCGGY	2 cut(s)	284, 950
Bse1I	ACTGG	4 cut(s)	399, 469, 668, 949
Bse21I	CCTNAGG	1 cut(s)	410
BseBI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BseDI	CCNNGG	4 cut(s)	255, 294, 385, 708
BseGI	GGATG	2 cut(s)	385, 685
BseLI	CCNNNNNNNGG	8 cut(s)	33, 34, 205, 259, 260, 295, 534, 829
BseMII	CTCAG	7 cut(s)	228, 288, 393, 424, 537, 545, 1007
BseNI	ACTGG	4 cut(s)	399, 469, 668, 949
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	8 cut(s)	310, 439, 442, 634, 910, 1015, 1018, 1037
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	2 cut(s)	441, 678
BshFI	GGCC	4 cut(s)	288, 366, 407, 544
BshNI	GGYRCC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	1079
BsiSI	CCGG	3 cut(s)	285, 684, 951
BslFI	GGGAC	2 cut(s)	50, 875
BslI	CCNNNNNNNGG	8 cut(s)	33, 34, 205, 259, 260, 295, 534, 829
BsmAI	GTCTC	2 cut(s)	62, 260
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	50, 875
BsmI	GAATGC	2 cut(s)	780, 1016
BsnI	GGCC	4 cut(s)	288, 366, 407, 544
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	1079
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	1 cut(s)	1035
BspANI	GGCC	4 cut(s)	288, 366, 407, 544
BspCNI	CTCAG	7 cut(s)	227, 287, 394, 423, 538, 546, 1008
BspLI	GGNNCC	5 cut(s)	313, 425, 526, 949, 1063
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	2 cut(s)	284, 950
BsrI	ACTGG	4 cut(s)	399, 469, 668, 949
BssAI	RCCGGY	2 cut(s)	284, 950
BssECI	CCNNGG	4 cut(s)	255, 294, 385, 708
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	255, 385
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BstAPI	GCANNNNNTGC	2 cut(s)	647, 1031
BstC8I	GCNNGC	3 cut(s)	338, 342, 1076
BstDEI	CTNAG	7 cut(s)	214, 274, 402, 410, 546, 554, 1016
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	385, 685
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	2 cut(s)	62, 260
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	7 cut(s)	320, 550, 647, 656, 974, 1031, 1034
BstNI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BstNSI	RCATGY	1 cut(s)	1078
BstSCI	CCNGG	5 cut(s)	294, 318, 366, 429, 708
BstV1I	GCAGC	8 cut(s)	310, 439, 442, 634, 910, 1015, 1018, 1037
Bsu36I	CCTNAGG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	4 cut(s)	288, 366, 407, 544
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	385, 685
BtsIMutI	CAGTG	3 cut(s)	167, 399, 462
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	3 cut(s)	338, 342, 1076
CaiI	CAGNNNCTG	2 cut(s)	295, 1031
Cfr10I	RCCGGY	2 cut(s)	284, 950
Cfr13I	GGNCC	3 cut(s)	364, 406, 424
Csp6I	GTAC	2 cut(s)	665, 932
CviAII	CATG	4 cut(s)	386, 470, 532, 1075
CviQI	GTAC	2 cut(s)	665, 932
DdeI	CTNAG	7 cut(s)	214, 274, 402, 410, 546, 554, 1016
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DriI	GACNNNNNGTC	1 cut(s)	868
EaeI	YGGCCR	1 cut(s)	286
Eam1105I	GACNNNNNGTC	1 cut(s)	868
Eco130I	CCWWGG	2 cut(s)	255, 385
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	587
Eco81I	CCTNAGG	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	1079
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	5 cut(s)	294, 318, 366, 429, 708
EcoT14I	CCWWGG	2 cut(s)	255, 385
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	255, 385
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	4 cut(s)	389, 473, 535, 1078
FaiI	YATR	9 cut(s)	234, 387, 471, 533, 726, 825, 917, 1004, 1076
FaqI	GGGAC	2 cut(s)	50, 875
FatI	CATG	4 cut(s)	385, 469, 531, 1074
Fnu4HI	GCNGC	9 cut(s)	324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
FokI	GGATG	2 cut(s)	392, 692
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	9 cut(s)	324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
FspBI	CTAG	4 cut(s)	143, 444, 848, 1071
GluI	GCNGC	9 cut(s)	324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	4 cut(s)	288, 366, 407, 544
HapII	CCGG	3 cut(s)	285, 684, 951
Hin1II	CATG	4 cut(s)	389, 473, 535, 1078
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	5 cut(s)	38, 146, 249, 613, 1099
HpaII	CCGG	3 cut(s)	285, 684, 951
HphI	GGTGA	7 cut(s)	12, 172, 275, 428, 490, 902, 965
Hpy166II	GTNNAC	4 cut(s)	427, 628, 665, 963
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	2 cut(s)	377, 617
Hpy8I	GTNNAC	4 cut(s)	427, 628, 665, 963
HpyAV	CCTTC	2 cut(s)	881, 1051
HpyCH4IV	ACGT	1 cut(s)	959
HpyCH4V	TGCA	6 cut(s)	224, 458, 487, 641, 659, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	320, 550, 647, 656, 974, 1031, 1034
HpyF3I	CTNAG	7 cut(s)	214, 274, 402, 410, 546, 554, 1016
HpySE526I	ACGT	1 cut(s)	959
Hsp92II	CATG	4 cut(s)	389, 473, 535, 1078
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	311, 947, 1061
Lsp1109I	GCAGC	8 cut(s)	310, 439, 442, 634, 910, 1015, 1018, 1037
LweI	GCATC	2 cut(s)	370, 670
MaeI	CTAG	4 cut(s)	143, 444, 848, 1071
MaeII	ACGT	1 cut(s)	959
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	2 cut(s)	1094, 1097
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	64, 104, 900
MlyI	GAGTC	3 cut(s)	32, 140, 243
MseI	TTAA	2 cut(s)	837, 903
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	3 cut(s)	285, 684, 951
MspR9I	CCNGG	5 cut(s)	296, 320, 368, 431, 710
Mva1269I	GAATGC	2 cut(s)	780, 1016
MvaI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
MwoI	GCNNNNNNNGC	7 cut(s)	320, 550, 647, 656, 974, 1031, 1034
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	389, 473, 535, 1078
NlaIV	GGNNCC	5 cut(s)	313, 425, 526, 949, 1063
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	1078
PaeI	GCATGC	1 cut(s)	1078
PaqCI	CACCTGC	1 cut(s)	650
PctI	GAATGC	2 cut(s)	780, 1016
PfeI	GAWTC	2 cut(s)	613, 1099
PflMI	CCANNNNNTGG	2 cut(s)	295, 829
PkrI	GCNGC	9 cut(s)	325, 454, 457, 649, 925, 1027, 1030, 1033, 1036
PleI	GAGTC	3 cut(s)	32, 140, 243
PpsI	GAGTC	3 cut(s)	32, 140, 243
Psp6I	CCWGG	5 cut(s)	294, 318, 366, 429, 708
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	5 cut(s)	294, 318, 366, 429, 708
PspN4I	GGNNCC	5 cut(s)	313, 425, 526, 949, 1063
PspPI	GGNCC	3 cut(s)	364, 406, 424
PstNI	CAGNNNCTG	2 cut(s)	295, 1031
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	2 cut(s)	666, 933
RsaNI	GTAC	2 cut(s)	665, 932
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	837, 903
SatI	GCNGC	9 cut(s)	324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	364, 406, 424
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	3 cut(s)	32, 140, 243
ScrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 710
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	2 cut(s)	370, 670
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	443
SphI	GCATGC	1 cut(s)	1078
Sse9I	AATT	3 cut(s)	64, 104, 900
SsiI	CCGC	1 cut(s)	1035
SspMI	CTAG	4 cut(s)	143, 444, 848, 1071
StyD4I	CCNGG	5 cut(s)	294, 318, 366, 429, 708
StyI	CCWWGG	2 cut(s)	255, 385
TaiI	ACGT	1 cut(s)	962
TasI	AATT	3 cut(s)	64, 104, 900
TatI	WGTACW	1 cut(s)	931
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	2 cut(s)	613, 1099
Tru1I	TTAA	2 cut(s)	837, 903
Tru9I	TTAA	2 cut(s)	837, 903
TscAI	CASTG	3 cut(s)	174, 406, 469
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	8 cut(s)	323, 452, 455, 647, 923, 1025, 1028, 1031
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	762, 909
TspRI	CASTG	3 cut(s)	174, 406, 469
Van91I	CCANNNNNTGG	2 cut(s)	295, 829
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	1078
XcmI	CCANNNNNNNNNTGG	3 cut(s)	296, 326, 514
XspI	CTAG	4 cut(s)	143, 444, 848, 1071
ZrmI	AGTACT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.