Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Reverse (-)

27110114 .. 27113142

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGTGCTATCCGAGCTGCAGTTTTCTCACCGTCAAATCAATGGCACGAACAAGTTCAAACCCATTTCCCAACCCACCCAAACAGATCAATCAACAACGCAAACCCAAATCTTCAATCCAATAGAAGAAACCCATTTCCCTGTTTCTCCGTAGACGCATCAAAATCCCCAAACCCAGCAACCCCGCCGCTCGTGGTGGTCGGCTCAGCCAATGCCGACATCTACGTCGAAATCGACCGTCTACCCAAAGAAGGCGAGACCATATCAGCCAAGAGCGGCCAGACCCTGGCTGGCGGCAAAGGCGCCAACCAGGCTGCCTGCGGCGGCAAGCTTTCTTACCCAACATACTTCGTCGGCCAGGTGGGCGAGGACGCCCATGGGAAGCTGATCACCGAGGCTCTGGAGAGCGGCGGGGTGTGCCTGGATCGCCTGAGTGCGGTTTCTGGGGCGCCCACTGGGCATGCGGTGGTGATGTTGCAGTCTGATGGGCAGAACTCCATCATCATTGTTGGTGGGTCCAACATGGAGTGCTGGCCTGAGAGGATTTCTGATGAGGATTTGGAGGTTGTGAGAAATGCTGGGATTGTTTTGCTTCAGAGGGAGATTCCGGAATCTGTCAACGTTCAGGTTGCAAAGGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCTGGAGGGATGGACACACCAATCTCCAGAGAACTATTGAACTTTGTTGATATTTTGAGTCCAAATGAAACTGAGCTTGGTCGTTTGACAGGAATGCCGACTGAAAGCTTTGAACAGATTAGTAATGCTGTGGTGAAACTCCATAAAATGGGCGTTAAGCAAGTCCTGGTGAAACTTGGGGACAAAGGGTCCGCCCTATTTGTAGATGGTGAAGAACCACTCAAACAACCAGTCATATCTGCTGCCAAAGTACTTGATACGACTGGAGCTGGTGATACTTTTACAGCCTCTTTCGCGGTGGCTCTTGTGGAGGGCAAGTCCAAACGAGAATGCTTGAGATTTGCAGCTGCGGCAGCTTCTCTTTGTGTTCAAGTAAAGGGAGCCATTCCTAGCATGCCGGAGAGAGAATCAGTTTTGAATCTTCTTCAGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

370

Amino Acids

38.87

Weight (kDa)

5.5

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	641
AccB1I	GGYRCC	2 cut(s)	302, 448
AccB7I	CCANNNNNTGG	2 cut(s)	286, 820
AccBSI	CCGCTC	3 cut(s)	190, 276, 408
AccI	GTMKAC	2 cut(s)	153, 241
AccII	CGCG	1 cut(s)	968
AccIII	TCCGGA	1 cut(s)	607
AclI	AACGTT	1 cut(s)	621
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	2 cut(s)	277, 355
AcuI	CTGAAG	2 cut(s)	578, 1082
AcyI	GRCGYC	3 cut(s)	303, 372, 449
AfaI	GTAC	2 cut(s)	657, 924
AfiI	CCNNNNNNNGG	4 cut(s)	251, 286, 436, 820
AgsI	TTSAA	6 cut(s)	59, 116, 712, 785, 1043, 1090
AhdI	GACNNNNNGTC	1 cut(s)	859
AjnI	CCWGG	5 cut(s)	285, 309, 357, 420, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	732, 764
AluBI	AGCT	8 cut(s)	17, 331, 385, 748, 780, 941, 1019, 1028
AluI	AGCT	8 cut(s)	17, 331, 385, 748, 780, 941, 1019, 1028
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	432
AlwNI	CAGNNNCTG	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	607
AoxI	GGCC	3 cut(s)	277, 355, 533
ApeKI	GCWGC	7 cut(s)	17, 314, 638, 914, 1016, 1019, 1025
ArsI	GACNNNNNNTTYG	2 cut(s)	888, 920
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	305, 451
AspS9I	GGNCC	2 cut(s)	516, 861
AsuHPI	GGTGA	7 cut(s)	21, 382, 481, 817, 853, 893, 956
AvaII	GGWCC	2 cut(s)	516, 861
BanI	GGYRCC	2 cut(s)	302, 448
BauI	CACGAG	1 cut(s)	191
BbvI	GCAGC	7 cut(s)	4, 301, 625, 901, 1006, 1028, 1037
BccI	CCATC	4 cut(s)	479, 506, 676, 872
BciT130I	CCWGG	5 cut(s)	287, 311, 359, 422, 839
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	1062
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	2 cut(s)	306, 452
BfuAI	ACCTGC	1 cut(s)	641
BglI	GCCNNNNNGGC	3 cut(s)	311, 363, 457
BlpI	GCTNAGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	5 cut(s)	287, 311, 359, 422, 839
Bme18I	GGWCC	2 cut(s)	516, 861
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmgT120I	GGNCC	2 cut(s)	516, 861
BmiI	GGNNCC	5 cut(s)	304, 450, 517, 862, 1054
BmrFI	CCNGG	5 cut(s)	287, 311, 359, 422, 839
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	167, 661
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	4 cut(s)	422, 682, 696, 957
Bpu1102I	GCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	1027
BsaHI	GRCGYC	3 cut(s)	303, 372, 449
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	285, 376, 393
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 286, 436, 820
Bse1I	ACTGG	4 cut(s)	460, 659, 902, 940
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	5 cut(s)	287, 311, 359, 422, 839
BseDI	CCNNGG	3 cut(s)	285, 376, 393
BseGI	GGATG	2 cut(s)	676, 687
BseLI	CCNNNNNNNGG	4 cut(s)	251, 286, 436, 820
BseMII	CTCAG	4 cut(s)	219, 422, 528, 735
BseNI	ACTGG	4 cut(s)	460, 659, 902, 940
BseXI	GCAGC	7 cut(s)	4, 301, 625, 901, 1006, 1028, 1037
BseYI	CCCAGC	2 cut(s)	175, 578
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	968
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	279, 357, 535
BshNI	GGYRCC	2 cut(s)	302, 448
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	608, 1070
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	4 cut(s)	251, 286, 436, 820
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	2 cut(s)	771, 1007
BsnI	GGCC	3 cut(s)	279, 357, 535
Bso31I	GGTCTC	1 cut(s)	251
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	86, 387, 424
Bsp1720I	GCTNAGC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	376
BspANI	GGCC	3 cut(s)	279, 357, 535
BspCNI	CTCAG	4 cut(s)	218, 423, 529, 736
BspEI	TCCGGA	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	968
BspLI	GGNNCC	5 cut(s)	304, 450, 517, 862, 1054
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	641
BspPI	GGATC	1 cut(s)	432
BspT107I	GGYRCC	2 cut(s)	302, 448
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	3 cut(s)	190, 276, 408
BsrI	ACTGG	4 cut(s)	460, 659, 902, 940
BssECI	CCNNGG	3 cut(s)	285, 376, 393
BssMI	GATC	3 cut(s)	86, 387, 424
BssNI	GRCGYC	3 cut(s)	303, 372, 449
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	5 cut(s)	287, 311, 359, 422, 839
Bst4CI	ACNGT	2 cut(s)	33, 239
BstACI	GRCGYC	3 cut(s)	303, 372, 449
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	6 cut(s)	292, 319, 329, 462, 533, 1067
BstDEI	CTNAG	4 cut(s)	205, 431, 537, 744
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	676, 687
BstFNI	CGCG	1 cut(s)	968
BstH2I	RGCGCY	2 cut(s)	306, 452
BstHHI	GCGC	2 cut(s)	305, 451
BstKTI	GATC	3 cut(s)	89, 390, 427
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	86, 387, 424
BstMCI	CGRYCG	1 cut(s)	238
BstNI	CCWGG	5 cut(s)	287, 311, 359, 422, 839
BstNSI	RCATGY	2 cut(s)	464, 1069
BstSCI	CCNGG	5 cut(s)	285, 309, 357, 420, 837
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	968
BstV1I	GCAGC	7 cut(s)	4, 301, 625, 901, 1006, 1028, 1037
BsuRI	GGCC	3 cut(s)	279, 357, 535
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	676, 687
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	6 cut(s)	292, 319, 329, 462, 533, 1067
CaiI	CAGNNNCTG	1 cut(s)	286
CfoI	GCGC	2 cut(s)	305, 451
Cfr13I	GGNCC	2 cut(s)	516, 861
CseI	GACGC	2 cut(s)	164, 380
Csp6I	GTAC	2 cut(s)	656, 923
CviAII	CATG	4 cut(s)	377, 461, 523, 1066
CviQI	GTAC	2 cut(s)	656, 923
DdeI	CTNAG	4 cut(s)	205, 431, 537, 744
DinI	GGCGCC	2 cut(s)	304, 450
DpnI	GATC	3 cut(s)	88, 389, 426
DpnII	GATC	3 cut(s)	86, 387, 424
DrdI	GACNNNNNNGTC	1 cut(s)	224
DriI	GACNNNNNGTC	1 cut(s)	859
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	277, 355
Eam1105I	GACNNNNNGTC	1 cut(s)	859
EciI	GGCGGA	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	516, 861
Eco57I	CTGAAG	2 cut(s)	578, 1082
EcoRII	CCWGG	5 cut(s)	285, 309, 357, 420, 837
EcoT14I	CCWWGG	1 cut(s)	376
EgeI	GGCGCC	2 cut(s)	304, 450
EheI	GGCGCC	2 cut(s)	304, 450
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	4 cut(s)	380, 464, 526, 1069
FaiI	YATR	8 cut(s)	263, 346, 378, 462, 524, 816, 908, 1067
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	4 cut(s)	376, 460, 522, 1065
FauI	CCCGC	2 cut(s)	192, 404
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	2 cut(s)	153, 241
FokI	GGATG	2 cut(s)	683, 694
FspBI	CTAG	1 cut(s)	1062
GlaI	GCGC	2 cut(s)	304, 450
GsaI	CCCAGC	2 cut(s)	179, 582
GsuI	CTGGAG	4 cut(s)	422, 682, 696, 957
HaeII	RGCGCY	2 cut(s)	306, 452
HaeIII	GGCC	3 cut(s)	279, 357, 535
HapII	CCGG	2 cut(s)	608, 1070
HgaI	GACGC	2 cut(s)	164, 380
HhaI	GCGC	2 cut(s)	305, 451
Hin1I	GRCGYC	3 cut(s)	303, 372, 449
Hin1II	CATG	4 cut(s)	380, 464, 526, 1069
Hin6I	GCGC	2 cut(s)	303, 449
HinP1I	GCGC	2 cut(s)	303, 449
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	329, 778
HinfI	GANTC	5 cut(s)	604, 611, 730, 1079, 1090
HpaII	CCGG	2 cut(s)	608, 1070
HphI	GGTGA	7 cut(s)	21, 382, 481, 817, 853, 893, 956
Hpy166II	GTNNAC	4 cut(s)	154, 242, 619, 656
Hpy188I	TCNGA	5 cut(s)	14, 484, 550, 597, 1109
Hpy188III	TCNNGA	3 cut(s)	401, 608, 699
Hpy8I	GTNNAC	4 cut(s)	154, 242, 619, 656
Hpy99I	CGWCG	2 cut(s)	230, 356
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	33, 239
HpyCH4IV	ACGT	2 cut(s)	225, 621
HpyCH4V	TGCA	5 cut(s)	20, 478, 632, 650, 1016
HpyF3I	CTNAG	4 cut(s)	205, 431, 537, 744
HpySE526I	ACGT	2 cut(s)	225, 621
Hsp92I	GRCGYC	3 cut(s)	303, 372, 449
Hsp92II	CATG	4 cut(s)	380, 464, 526, 1069
HspAI	GCGC	2 cut(s)	303, 449
KasI	GGCGCC	2 cut(s)	302, 448
Kpn2I	TCCGGA	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	86, 387, 424
LmnI	GCTCC	2 cut(s)	938, 1052
Lsp1109I	GCAGC	7 cut(s)	4, 301, 625, 901, 1006, 1028, 1037
LweI	GCATC	2 cut(s)	167, 661
MaeI	CTAG	1 cut(s)	1062
MaeII	ACGT	2 cut(s)	225, 621
MalI	GATC	3 cut(s)	88, 389, 426
MbiI	CCGCTC	3 cut(s)	190, 276, 408
MboI	GATC	3 cut(s)	86, 387, 424
MboII	GAAGA	5 cut(s)	104, 138, 896, 1085, 1088
Mly113I	GGCGCC	2 cut(s)	303, 449
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	9 cut(s)	361, 388, 534, 547, 556, 591, 671, 970, 976
MroI	TCCGGA	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	608, 1070
MspR9I	CCNGG	5 cut(s)	287, 311, 359, 422, 839
Mva1269I	GAATGC	2 cut(s)	771, 1007
MvaI	CCWGG	5 cut(s)	287, 311, 359, 422, 839
MvnI	CGCG	1 cut(s)	968
NarI	GGCGCC	2 cut(s)	303, 449
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	86, 387, 424
NlaIII	CATG	4 cut(s)	380, 464, 526, 1069
NlaIV	GGNNCC	5 cut(s)	304, 450, 517, 862, 1054
NspI	RCATGY	2 cut(s)	464, 1069
PaeI	GCATGC	2 cut(s)	464, 1069
PaqCI	CACCTGC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	2 cut(s)	771, 1007
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	604, 611, 1079, 1090
PflMI	CCANNNNNTGG	2 cut(s)	286, 820
PleI	GAGTC	1 cut(s)	738
PluTI	GGCGCC	2 cut(s)	306, 452
PpsI	GAGTC	1 cut(s)	738
Psp1406I	AACGTT	1 cut(s)	621
Psp6I	CCWGG	5 cut(s)	285, 309, 357, 420, 837
PspFI	CCCAGC	2 cut(s)	175, 578
PspGI	CCWGG	5 cut(s)	285, 309, 357, 420, 837
PspN4I	GGNNCC	5 cut(s)	304, 450, 517, 862, 1054
PspPI	GGNCC	2 cut(s)	516, 861
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	2 cut(s)	657, 924
RsaNI	GTAC	2 cut(s)	656, 923
SaqAI	TTAA	1 cut(s)	828
Sau3AI	GATC	3 cut(s)	86, 387, 424
Sau96I	GGNCC	2 cut(s)	516, 861
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	5 cut(s)	287, 311, 359, 422, 839
SfaNI	GCATC	2 cut(s)	167, 661
SfcI	CTRYAG	1 cut(s)	18
SfoI	GGCGCC	2 cut(s)	304, 450
SinI	GGWCC	2 cut(s)	516, 861
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
SphI	GCATGC	2 cut(s)	464, 1069
SspDI	GGCGCC	2 cut(s)	302, 448
SspMI	CTAG	1 cut(s)	1062
StyD4I	CCNGG	5 cut(s)	285, 309, 357, 420, 837
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	33, 239
TaiI	ACGT	2 cut(s)	228, 624
TaqI	TCGA	2 cut(s)	228, 234
TatI	WGTACW	1 cut(s)	922
TauI	GCSGC	7 cut(s)	190, 279, 297, 324, 327, 411, 1025
TfiI	GAWTC	4 cut(s)	604, 611, 1079, 1090
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	7 cut(s)	17, 314, 638, 914, 1016, 1019, 1025
TspDTI	ATGAA	1 cut(s)	753
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	2 cut(s)	286, 820
VpaK11BI	GGWCC	2 cut(s)	516, 861
XceI	RCATGY	2 cut(s)	464, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmiI	GTMKAC	2 cut(s)	153, 241
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	1062
ZrmI	AGTACT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.