Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Reverse (-)

38983554 .. 38986257

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1273100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGTGCTATCCGAGCTGCAGTTTTCTCACCGTCAAATCAATGGCACGAAAAAATTCAAACCCATTTCCCAACCCACCCAAACAGATCAATCAACAACGCAAACCCAAATCTTCAATCCAATAGAAGAAACCCATTTCCCTGTTTCTCCGTAGACGCATCAAAATCCCCAAACCCAGCAACCCCTCTCACCGCCACAACCCCGCCGCTCGTGGTGGTCGGCTCAGCCAATGCCGACATCTACGTCGAAATCGACCGTCTACCCAAAGAAGGCGAGACCATTTCAGCCAAGAGCGGCCAGACCCTGGCTGGCGGCAAAGGCGCCAACCAGGCTGCCTGCGGCGGCAAGCTTTCTTACCCAACATACTTCGTCGGTCAGGTGGGCGAGGACGCCCATGGGAAGCTGATCACCGAGGCTCTGAAGAGCGGCGGGGTCTGCCTCGATCGCCTGAGTGCGGTTTCTGGTGCGCCCACTGGGCATGCGGTGGTGATGTTGCAGTCTGATGGGCAGAACTCCATCATCATTGTTGGTGGGTCCAACATGGAGTGCTGGCCTGAGAGGATTTCTGATGAGGATTTGGAGGTTGTGAGAAATGCTGGAATTGTTCTGCTTCAGAGGGAGATTCCGGATTCGGTCAACGTTCAGGTTGCAAAGGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCTGGAGGGATGGACACACCAATCTCTAGAGAACTATTGAACTTTGTTGATATTTTGAGTCCAAATGAAACTGAGCTTGGTCGTTTGACAGGAATGCCGACTGAAAGCTTTGAACAGATTAGTAATGCTGTGGTGAAACTCCATAAAATGGGTGTTAAGCAAGTCCTGGTGAAACTTGGGGACAAAGGGTCCGCCCTATTTGTAGATGGTGAAGAACCACTCAAACAACCAGTCATACCTGCTGCCAAAGTACTTGATACTACCGGAGCTGGTGATACTTTTACAGCCTCTTTCGCGGTGGCTCTTGTGGAGGGCAAGTCCAAACGAGAATGCTTGAGATTTGCAGCTGCGGCAGCTTCTCTTTGTGTTCAAGTAAAGGGAGCCATTCCTAGCATGCCGGAGAGAAAATCAGTTTTGAATCTTCTTCAGTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

376

Amino Acids

39.45

Weight (kDa)

6.33

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	70 - 364	2.2e-63	pfkB family carbohydrate kinase
Phos_pyr_kin	PF08543	238 - 347	1.6e-11	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
AasI	GACNNNNNNGTC	1 cut(s)	242
Acc36I	ACCTGC	2 cut(s)	659, 937
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	2 cut(s)	304, 838
AccBSI	CCGCTC	3 cut(s)	208, 294, 426
AccI	GTMKAC	2 cut(s)	153, 259
AccII	CGCG	1 cut(s)	986
AccIII	TCCGGA	1 cut(s)	625
AclI	AACGTT	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	3 cut(s)	440, 596, 1100
AcyI	GRCGYC	2 cut(s)	321, 390
AfaI	GTAC	2 cut(s)	675, 942
AfiI	CCNNNNNNNGG	4 cut(s)	269, 304, 454, 838
AgsI	TTSAA	6 cut(s)	59, 116, 730, 803, 1061, 1108
AhdI	GACNNNNNGTC	1 cut(s)	877
AjnI	CCWGG	3 cut(s)	303, 327, 855
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	8 cut(s)	17, 349, 403, 766, 798, 959, 1037, 1046
AluI	AGCT	8 cut(s)	17, 349, 403, 766, 798, 959, 1037, 1046
Alw26I	GTCTC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	2 cut(s)	295, 551
ApeKI	GCWGC	7 cut(s)	17, 332, 656, 932, 1034, 1037, 1043
ApoI	RAATTY	1 cut(s)	54
ArsI	GACNNNNNNTTYG	2 cut(s)	906, 938
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	323, 469
AspS9I	GGNCC	2 cut(s)	534, 879
AsuHPI	GGTGA	8 cut(s)	21, 181, 400, 499, 835, 871, 911, 974
AvaII	GGWCC	2 cut(s)	534, 879
BanI	GGYRCC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	209
BbvI	GCAGC	7 cut(s)	4, 319, 643, 919, 1024, 1046, 1055
BccI	CCATC	4 cut(s)	497, 524, 694, 890
BciT130I	CCWGG	3 cut(s)	305, 329, 857
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	717, 1080
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	2 cut(s)	659, 937
BglI	GCCNNNNNGGC	2 cut(s)	329, 475
BlpI	GCTNAGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	942
Bme1390I	CCNGG	3 cut(s)	305, 329, 857
Bme18I	GGWCC	2 cut(s)	534, 879
BmeRI	GACNNNNNGTC	1 cut(s)	877
BmgT120I	GGNCC	2 cut(s)	534, 879
BmiI	GGNNCC	4 cut(s)	322, 535, 880, 1072
BmrFI	CCNGG	3 cut(s)	305, 329, 857
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	167, 679
BmuI	ACTGGG	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	714
Bpu1102I	GCTNAGC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	1045
BsaHI	GRCGYC	2 cut(s)	321, 390
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	303, 394, 411
BsaWI	WCCGGW	2 cut(s)	625, 953
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 304, 454, 838
Bse1I	ACTGG	3 cut(s)	478, 677, 920
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	3 cut(s)	305, 329, 857
BseDI	CCNNGG	3 cut(s)	303, 394, 411
BseGI	GGATG	2 cut(s)	694, 705
BseLI	CCNNNNNNNGG	4 cut(s)	269, 304, 454, 838
BseMII	CTCAG	4 cut(s)	237, 440, 546, 753
BseNI	ACTGG	3 cut(s)	478, 677, 920
BseXI	GCAGC	7 cut(s)	4, 319, 643, 919, 1024, 1046, 1055
BseYI	CCCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	1 cut(s)	986
Bsh1285I	CGRYCG	2 cut(s)	256, 445
BshFI	GGCC	2 cut(s)	297, 553
BshNI	GGYRCC	1 cut(s)	320
BsiEI	CGRYCG	2 cut(s)	256, 445
BsiSI	CCGG	3 cut(s)	626, 954, 1088
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	4 cut(s)	269, 304, 454, 838
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	2 cut(s)	789, 1025
BsnI	GGCC	2 cut(s)	297, 553
Bso31I	GGTCTC	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	86, 405, 442
Bsp1720I	GCTNAGC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	394
BspANI	GGCC	2 cut(s)	297, 553
BspCNI	CTCAG	4 cut(s)	236, 441, 547, 754
BspEI	TCCGGA	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	986
BspLI	GGNNCC	4 cut(s)	322, 535, 880, 1072
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	2 cut(s)	659, 937
BspQI	GCTCTTC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	269
BsrBI	CCGCTC	3 cut(s)	208, 294, 426
BsrI	ACTGG	3 cut(s)	478, 677, 920
BssECI	CCNNGG	3 cut(s)	303, 394, 411
BssMI	GATC	3 cut(s)	86, 405, 442
BssNI	GRCGYC	2 cut(s)	321, 390
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	3 cut(s)	305, 329, 857
Bst4CI	ACNGT	2 cut(s)	33, 257
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	321, 390
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	6 cut(s)	310, 337, 347, 480, 551, 1085
BstDEI	CTNAG	4 cut(s)	223, 449, 555, 762
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	694, 705
BstFNI	CGCG	1 cut(s)	986
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	323, 469
BstKTI	GATC	3 cut(s)	89, 408, 445
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	86, 405, 442
BstMCI	CGRYCG	2 cut(s)	256, 445
BstNI	CCWGG	3 cut(s)	305, 329, 857
BstNSI	RCATGY	2 cut(s)	482, 1087
BstSCI	CCNGG	3 cut(s)	303, 327, 855
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	986
BstV1I	GCAGC	7 cut(s)	4, 319, 643, 919, 1024, 1046, 1055
BsuRI	GGCC	2 cut(s)	297, 553
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	694, 705
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	2 cut(s)	659, 937
Cac8I	GCNNGC	6 cut(s)	310, 337, 347, 480, 551, 1085
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	2 cut(s)	323, 469
Cfr13I	GGNCC	2 cut(s)	534, 879
CseI	GACGC	2 cut(s)	164, 398
Csp6I	GTAC	2 cut(s)	674, 941
CviAII	CATG	4 cut(s)	395, 479, 541, 1084
CviQI	GTAC	2 cut(s)	674, 941
DdeI	CTNAG	4 cut(s)	223, 449, 555, 762
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	3 cut(s)	88, 407, 444
DpnII	GATC	3 cut(s)	86, 405, 442
DrdI	GACNNNNNNGTC	1 cut(s)	242
DriI	GACNNNNNGTC	1 cut(s)	877
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	416
Eam1105I	GACNNNNNGTC	1 cut(s)	877
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	534, 879
Eco57I	CTGAAG	3 cut(s)	440, 596, 1100
EcoRII	CCWGG	3 cut(s)	303, 327, 855
EcoT14I	CCWWGG	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	398, 482, 544, 1087
FaiI	YATR	7 cut(s)	364, 396, 480, 542, 834, 926, 1085
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	4 cut(s)	394, 478, 540, 1083
FauI	CCCGC	2 cut(s)	210, 422
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	2 cut(s)	153, 259
FokI	GGATG	2 cut(s)	701, 712
FspBI	CTAG	2 cut(s)	717, 1080
GlaI	GCGC	2 cut(s)	322, 468
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	714
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	297, 553
HapII	CCGG	3 cut(s)	626, 954, 1088
HgaI	GACGC	2 cut(s)	164, 398
HhaI	GCGC	2 cut(s)	323, 469
Hin1I	GRCGYC	2 cut(s)	321, 390
Hin1II	CATG	4 cut(s)	398, 482, 544, 1087
Hin6I	GCGC	2 cut(s)	321, 467
HinP1I	GCGC	2 cut(s)	321, 467
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	347, 796
HinfI	GANTC	4 cut(s)	622, 629, 748, 1108
HpaII	CCGG	3 cut(s)	626, 954, 1088
HphI	GGTGA	8 cut(s)	21, 181, 400, 499, 835, 871, 911, 974
Hpy166II	GTNNAC	4 cut(s)	154, 260, 637, 674
Hpy188I	TCNGA	5 cut(s)	14, 420, 502, 568, 615
Hpy188III	TCNNGA	2 cut(s)	626, 717
Hpy8I	GTNNAC	4 cut(s)	154, 260, 637, 674
Hpy99I	CGWCG	2 cut(s)	248, 374
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	33, 257
HpyCH4IV	ACGT	2 cut(s)	243, 639
HpyCH4V	TGCA	5 cut(s)	20, 496, 650, 668, 1034
HpyF3I	CTNAG	4 cut(s)	223, 449, 555, 762
HpySE526I	ACGT	2 cut(s)	243, 639
Hsp92I	GRCGYC	2 cut(s)	321, 390
Hsp92II	CATG	4 cut(s)	398, 482, 544, 1087
HspAI	GCGC	2 cut(s)	321, 467
KasI	GGCGCC	1 cut(s)	320
Kpn2I	TCCGGA	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	86, 405, 442
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	2 cut(s)	956, 1070
Lsp1109I	GCAGC	7 cut(s)	4, 319, 643, 919, 1024, 1046, 1055
LweI	GCATC	2 cut(s)	167, 679
MaeI	CTAG	2 cut(s)	717, 1080
MaeII	ACGT	2 cut(s)	243, 639
MalI	GATC	3 cut(s)	88, 407, 444
MbiI	CCGCTC	3 cut(s)	208, 294, 426
MboI	GATC	3 cut(s)	86, 405, 442
MboII	GAAGA	6 cut(s)	104, 138, 433, 914, 1103, 1106
MluCI	AATT	2 cut(s)	54, 600
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	1 cut(s)	561
MroI	TCCGGA	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	1037
MspI	CCGG	3 cut(s)	626, 954, 1088
MspR9I	CCNGG	3 cut(s)	305, 329, 857
Mva1269I	GAATGC	2 cut(s)	789, 1025
MvaI	CCWGG	3 cut(s)	305, 329, 857
MvnI	CGCG	1 cut(s)	986
NarI	GGCGCC	1 cut(s)	321
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	3 cut(s)	86, 405, 442
NlaIII	CATG	4 cut(s)	398, 482, 544, 1087
NlaIV	GGNNCC	4 cut(s)	322, 535, 880, 1072
NspI	RCATGY	2 cut(s)	482, 1087
PaeI	GCATGC	2 cut(s)	482, 1087
PaqCI	CACCTGC	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	2 cut(s)	789, 1025
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	622, 629, 1108
PflMI	CCANNNNNTGG	2 cut(s)	304, 838
Ple19I	CGATCG	1 cut(s)	445
PleI	GAGTC	1 cut(s)	756
PluTI	GGCGCC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	756
Psp1406I	AACGTT	1 cut(s)	639
Psp6I	CCWGG	3 cut(s)	303, 327, 855
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	3 cut(s)	303, 327, 855
PspN4I	GGNNCC	4 cut(s)	322, 535, 880, 1072
PspPI	GGNCC	2 cut(s)	534, 879
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	1037
RsaI	GTAC	2 cut(s)	675, 942
RsaNI	GTAC	2 cut(s)	674, 941
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	846
Sau3AI	GATC	3 cut(s)	86, 405, 442
Sau96I	GGNCC	2 cut(s)	534, 879
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	3 cut(s)	305, 329, 857
SfaNI	GCATC	2 cut(s)	167, 679
SfcI	CTRYAG	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	322
SinI	GGWCC	2 cut(s)	534, 879
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
SphI	GCATGC	2 cut(s)	482, 1087
Sse9I	AATT	2 cut(s)	54, 600
SspDI	GGCGCC	1 cut(s)	320
SspMI	CTAG	2 cut(s)	717, 1080
StyD4I	CCNGG	3 cut(s)	303, 327, 855
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	33, 257
TaiI	ACGT	2 cut(s)	246, 642
TaqI	TCGA	3 cut(s)	246, 252, 441
TaqII	GACCGA	2 cut(s)	362, 622
TasI	AATT	2 cut(s)	54, 600
TatI	WGTACW	1 cut(s)	940
TauI	GCSGC	7 cut(s)	208, 297, 315, 342, 345, 429, 1043
TfiI	GAWTC	3 cut(s)	622, 629, 1108
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	7 cut(s)	17, 332, 656, 932, 1034, 1037, 1043
TspDTI	ATGAA	1 cut(s)	771
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	2 cut(s)	304, 838
VpaK11BI	GGWCC	2 cut(s)	534, 879
XapI	RAATTY	1 cut(s)	54
XbaI	TCTAGA	1 cut(s)	716
XceI	RCATGY	2 cut(s)	482, 1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	2 cut(s)	153, 259
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	2 cut(s)	717, 1080
ZrmI	AGTACT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.