Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039366.1

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3373

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgagagcaatagcgttttcaccctcccaacaatgggactccaaaatccaaacccgtctcccaaattcctcacacacaccaatcaacaccaacccaaatctccaattcaaaaccacaagacacccacttccctgcttctccctagactcatcaaaatcccaaagcccactgaccccaatcacccccacaaccccacccctcgtggtggtgggctcagccaatgcagacatctatgttgagattgatagactccccaaggagggtgagaccatctcagccaaaaccggtcagaccctggctggtggcaaaggagccaaccaggctgcctgtggtggcaagctggcttacccaacctactttgtgggccaggtgggtcaggatgcccatggcaaactggtcactgaggccctcagggatggtggggtccacctggatcacctgactagtgtgggtgctgcacccactggtcatgctgtggtgatgttgcagagtgatgggcagaactccattatcattgtgggtggtgccaacatgagatgttggcctgagaggctgagtgatgaggatttgagggttgtgaggagtgctgggattgttttgcttcagagggagattccagaagtggtcaacattcaggttgcaaaggctgccaagagtgcaggtgtaccagtcattttggatgccggaggaatggatacaccaatctccccggagttattgaactatgttgatatttttagcccaaatgaaagtgagcttggtcgtttgacaggaatgccgaccgaaagctttgaacagattagtaatgccgttgtcaaatgccataaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

277

Amino Acids

29.45

Weight (kDa)

6.16

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	524
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	5 cut(s)	33, 34, 205, 259, 260
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	109, 721, 794
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	4 cut(s)	294, 318, 366, 429
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
AluBI	AGCT	3 cut(s)	340, 757, 789
AluI	AGCT	3 cut(s)	340, 757, 789
Alw26I	GTCTC	2 cut(s)	62, 260
AlwI	GGATC	1 cut(s)	441
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	3 cut(s)	364, 405, 542
ApeKI	GCWGC	3 cut(s)	323, 455, 647
ApoI	RAATTY	1 cut(s)	64
AsiGI	ACCGGT	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	364, 406, 424
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	5 cut(s)	12, 172, 275, 428, 490
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	310, 442, 634
BccI	CCATC	3 cut(s)	278, 410, 488
BceAI	ACGGC	1 cut(s)	794
BciT130I	CCWGG	4 cut(s)	296, 320, 368, 431
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	2 cut(s)	62, 260
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	2 cut(s)	143, 444
BfuAI	ACCTGC	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	2 cut(s)	320, 550
BisI	GCNGC	3 cut(s)	324, 456, 648
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	3 cut(s)	325, 457, 649
Bme1390I	CCNGG	5 cut(s)	296, 320, 368, 431, 710
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	3 cut(s)	364, 406, 424
BmiI	GGNNCC	3 cut(s)	313, 425, 526
BmrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 710
BmsI	GCATC	2 cut(s)	370, 670
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu1102I	GCTNAGC	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	255, 294, 385, 708
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 34, 205, 259, 260
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	399, 469, 668
Bse21I	CCTNAGG	1 cut(s)	410
BseBI	CCWGG	4 cut(s)	296, 320, 368, 431
BseDI	CCNNGG	4 cut(s)	255, 294, 385, 708
BseGI	GGATG	3 cut(s)	385, 421, 685
BseLI	CCNNNNNNNGG	5 cut(s)	33, 34, 205, 259, 260
BseMII	CTCAG	6 cut(s)	228, 288, 393, 424, 537, 545
BseNI	ACTGG	3 cut(s)	399, 469, 668
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	3 cut(s)	310, 442, 634
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	2 cut(s)	441, 678
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	3 cut(s)	366, 407, 544
BshNI	GGYRCC	1 cut(s)	524
BshTI	ACCGGT	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	783
BsiSI	CCGG	3 cut(s)	285, 684, 710
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	5 cut(s)	33, 34, 205, 259, 260
BsmAI	GTCTC	2 cut(s)	62, 260
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	3 cut(s)	366, 407, 544
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	385
BspANI	GGCC	3 cut(s)	366, 407, 544
BspCNI	CTCAG	6 cut(s)	227, 287, 394, 423, 538, 546
BspLI	GGNNCC	3 cut(s)	313, 425, 526
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	399, 469, 668
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	255, 294, 385, 708
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	255, 385
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	4 cut(s)	296, 320, 368, 431
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	338, 342
BstDEI	CTNAG	6 cut(s)	214, 274, 402, 410, 546, 554
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	3 cut(s)	385, 421, 685
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	2 cut(s)	62, 260
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 550, 647, 656
BstNI	CCWGG	4 cut(s)	296, 320, 368, 431
BstSCI	CCNGG	5 cut(s)	294, 318, 366, 429, 708
BstV1I	GCAGC	3 cut(s)	310, 442, 634
Bsu36I	CCTNAGG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	366, 407, 544
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	385, 421, 685
BtsIMutI	CAGTG	3 cut(s)	167, 399, 462
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	338, 342
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	3 cut(s)	364, 406, 424
Csp6I	GTAC	1 cut(s)	665
CspAI	ACCGGT	1 cut(s)	284
CviAII	CATG	3 cut(s)	386, 470, 532
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	6 cut(s)	214, 274, 402, 410, 546, 554
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	255, 385
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	587
Eco81I	CCTNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	4 cut(s)	294, 318, 366, 429
EcoT14I	CCWWGG	2 cut(s)	255, 385
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	255, 385
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	3 cut(s)	389, 473, 535
FaiI	YATR	6 cut(s)	234, 387, 471, 533, 726, 825
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	385, 469, 531
Fnu4HI	GCNGC	3 cut(s)	324, 456, 648
FokI	GGATG	3 cut(s)	392, 428, 692
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	324, 456, 648
FspBI	CTAG	2 cut(s)	143, 444
GluI	GCNGC	3 cut(s)	324, 456, 648
GsaI	CCCAGC	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	366, 407, 544
HapII	CCGG	3 cut(s)	285, 684, 710
Hin1II	CATG	3 cut(s)	389, 473, 535
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	4 cut(s)	38, 146, 249, 613
HpaII	CCGG	3 cut(s)	285, 684, 710
HphI	GGTGA	5 cut(s)	12, 172, 275, 428, 490
Hpy166II	GTNNAC	3 cut(s)	427, 628, 665
Hpy188I	TCNGA	2 cut(s)	291, 606
Hpy188III	TCNNGA	2 cut(s)	377, 617
Hpy8I	GTNNAC	3 cut(s)	427, 628, 665
HpyCH4V	TGCA	5 cut(s)	224, 458, 487, 641, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 550, 647, 656
HpyF3I	CTNAG	6 cut(s)	214, 274, 402, 410, 546, 554
Hsp92II	CATG	3 cut(s)	389, 473, 535
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	3 cut(s)	310, 442, 634
LweI	GCATC	2 cut(s)	370, 670
MaeI	CTAG	2 cut(s)	143, 444
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	2 cut(s)	64, 104
MlyI	GAGTC	3 cut(s)	32, 140, 243
MspI	CCGG	3 cut(s)	285, 684, 710
MspR9I	CCNGG	5 cut(s)	296, 320, 368, 431, 710
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	4 cut(s)	296, 320, 368, 431
MwoI	GCNNNNNNNGC	4 cut(s)	320, 550, 647, 656
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	3 cut(s)	389, 473, 535
NlaIV	GGNNCC	3 cut(s)	313, 425, 526
NmuCI	GTSAC	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	650
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	325, 457, 649
PleI	GAGTC	3 cut(s)	32, 140, 243
PpsI	GAGTC	3 cut(s)	32, 140, 243
Psp6I	CCWGG	4 cut(s)	294, 318, 366, 429
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	4 cut(s)	294, 318, 366, 429
PspN4I	GGNNCC	3 cut(s)	313, 425, 526
PspPI	GGNCC	3 cut(s)	364, 406, 424
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
SatI	GCNGC	3 cut(s)	324, 456, 648
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	364, 406, 424
SchI	GAGTC	3 cut(s)	32, 140, 243
ScrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 710
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	9 cut(s)	342, 356, 372, 432, 441, 639, 664, 759, 791
SfaNI	GCATC	2 cut(s)	370, 670
SinI	GGWCC	1 cut(s)	424
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	2 cut(s)	64, 104
SspMI	CTAG	2 cut(s)	143, 444
StyD4I	CCNGG	5 cut(s)	294, 318, 366, 429, 708
StyI	CCWWGG	2 cut(s)	255, 385
TaqII	GACCGA	1 cut(s)	797
TasI	AATT	2 cut(s)	64, 104
TfiI	GAWTC	1 cut(s)	613
TscAI	CASTG	3 cut(s)	174, 406, 469
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	3 cut(s)	323, 455, 647
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	762
TspRI	CASTG	3 cut(s)	174, 406, 469
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 514
XspI	CTAG	2 cut(s)	143, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.