Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Reverse (-)

71473258 .. 71478191

Gene Structure 4934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGAGAGCATTAGCATTTTCACCCTCCCAACACTGGGTCTCCAAAATCCAAACCCATCTCCCAAATTCCTCAGACACACCAACCAACACCAACCCAAATCTCCAATTCAAAACCACAAGACACCCACTTCCCTGCTTCTCCCTAGACTCGTCAAAATCCCAAACCCCACTGACCCCAATCACCCCCACAACCCCACCCCTCGTGGTGGTGGGCTCAGCCAATGCAGACATCTATGTTGAGATTGAGAGACTCCCCAAGGAGGGTGAGACCATCTCAGCCAAAAACGGTCAGACCCTGGCTGGTGGCAAAGGAGCCAACCAGGCTGCCTGTGGTGGCAAGCTGGCTTACCCAACCTACTTTGTGGGCCAGGTGGGTCAGGATGCCCATGGCAAACTGATCACTGAGGCCCTCAGGGATGGTGGGGTCCACCTGGATTACCTGACTAGTGTGGCTGCTGCACCCACTGGGCATGCTGTGGTGATGTTGCAGGGTGATGGGCAGAACTCCATTATCATTGTGGGTGGTGCCAACATGAGGTGTTGGCCTGAGAGCCTGAGTGATGAGGATTTGAGGGTTGTGAGGAGTGCTGGGATTGTTTTGCTGCAGAGGGAGATTCCAGAAGTGGTCAACATTCAGGTTGCAAAGAGAATTCCTTTAGCTTATGACTATGCAAAATGTGAAAAGATGGCTAATCTGTGCATGGATGGGAGTTCTTTGTTGGTTTTAAGGATTGAAATTTTTCAAGAAAGAATTCCTTTAGCTTATGACTATGCAAAATGTGAAAAGATGGCTAATCTGTGCATGGATGGGAGTTCTTTGTTGGTTTTAAGGATTGAAATTTTTCAAGAAGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCCGGAGGAATGGATACACCAATCTCCCAGGAGCTATTGAACTATGTTGATATTTTTAGCCCAAATGAAAGTGAGCTTGGTCGTTTGACAGGAATGCCGACCGAAAGCTTTGAACAGATTAGTAATGCCGTTGTCAAATGCCATAAAATGGGTGTTAAGCAAGTCCTAGTAAAACTTGGGGACAAAGGGTCTGCTCTATTTGTAGAAGGTGATGAACCAATTAAACAACCTGTCATATCTGCTGCGAAAGTACTTGATACTACTGGAGCCGGTGATACGTTTACTGCCTCTTTTGCTGTTGCTTTTGTGGAGGGCAAGTCCATAAAGGAATGCCTGAGATTTGCAGCTGCGGCCGCTTCTCTTTGTGTTCAAGTGAAGGGAGCCATTCCTAGCATGCCCGAGAGGAAATCAGTTTTGAATCTTCTTCAATCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

440

Amino Acids

47.07

Weight (kDa)

5.88

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	67 - 213	1.7e-19	pfkB family carbohydrate kinase
PfkB	PF00294	255 - 429	3.2e-38	pfkB family carbohydrate kinase
Phos_pyr_kin	PF08543	303 - 412	4.4e-10	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	1033
AciI	CCGC	2 cut(s)	1235, 1239
AcoI	YGGCCR	1 cut(s)	1236
AcsI	RAATTY	5 cut(s)	64, 648, 735, 750, 837
AfaI	GTAC	2 cut(s)	870, 1137
AfiI	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 1033
AhdI	GACNNNNNGTC	1 cut(s)	1072
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	5 cut(s)	294, 318, 366, 429, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	945, 977
AluBI	AGCT	8 cut(s)	340, 659, 761, 851, 919, 961, 993, 1232
AluI	AGCT	8 cut(s)	340, 659, 761, 851, 919, 961, 993, 1232
Alw26I	GTCTC	3 cut(s)	43, 241, 260
AlwNI	CAGNNNCTG	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	1283
AoxI	GGCC	4 cut(s)	364, 405, 542, 1236
ApeKI	GCWGC	8 cut(s)	323, 452, 455, 601, 851, 1127, 1229, 1232
ApoI	RAATTY	5 cut(s)	64, 648, 735, 750, 837
Asp700I	GAANNNNTTC	3 cut(s)	738, 750, 840
AspS9I	GGNCC	3 cut(s)	364, 406, 424
AsuHPI	GGTGA	7 cut(s)	12, 172, 275, 490, 503, 1106, 1169
AvaI	CYCGRG	1 cut(s)	1283
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	200
BbvI	GCAGC	8 cut(s)	310, 439, 442, 588, 838, 1114, 1219, 1241
BccI	CCATC	8 cut(s)	63, 278, 410, 488, 679, 698, 781, 800
BceAI	ACGGC	1 cut(s)	998
BciT130I	CCWGG	5 cut(s)	296, 320, 368, 431, 914
BciVI	GTATCC	1 cut(s)	892
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	43, 241, 260
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	4 cut(s)	143, 444, 1052, 1275
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	854
BfuI	GTATCC	1 cut(s)	892
BglI	GCCNNNNNGGC	1 cut(s)	320
BlpI	GCTNAGC	1 cut(s)	214
BmcAI	AGTACT	1 cut(s)	1137
Bme1390I	CCNGG	5 cut(s)	296, 320, 368, 431, 914
Bme18I	GGWCC	1 cut(s)	424
BmeRI	GACNNNNNGTC	1 cut(s)	1072
BmeT110I	CYCGRG	1 cut(s)	1283
BmgT120I	GGNCC	3 cut(s)	364, 406, 424
BmiI	GGNNCC	5 cut(s)	313, 425, 526, 1153, 1267
BmrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 914
BmrI	ACTGGG	2 cut(s)	43, 474
BmsI	GCATC	2 cut(s)	370, 874
BmuI	ACTGGG	2 cut(s)	43, 474
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	1 cut(s)	1170
Bpu1102I	GCTNAGC	1 cut(s)	214
BsaI	GGTCTC	2 cut(s)	43, 260
BsaJI	CCNNGG	4 cut(s)	255, 294, 385, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 1187, 1217
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 1033
Bse118I	RCCGGY	1 cut(s)	1154
Bse1I	ACTGG	4 cut(s)	38, 469, 872, 1153
Bse21I	CCTNAGG	1 cut(s)	410
BseBI	CCWGG	5 cut(s)	296, 320, 368, 431, 914
BseDI	CCNNGG	4 cut(s)	255, 294, 385, 912
BseGI	GGATG	5 cut(s)	385, 421, 709, 811, 889
BseLI	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 1033
BseMII	CTCAG	8 cut(s)	84, 228, 288, 393, 424, 537, 545, 1211
BseNI	ACTGG	4 cut(s)	38, 469, 872, 1153
BseRI	GAGGAG	1 cut(s)	595
BseX3I	CGGCCG	1 cut(s)	1236
BseXI	GCAGC	8 cut(s)	310, 439, 442, 588, 838, 1114, 1219, 1241
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	2 cut(s)	441, 882
Bsh1285I	CGRYCG	2 cut(s)	987, 1239
BshFI	GGCC	4 cut(s)	366, 407, 544, 1238
BshNI	GGYRCC	1 cut(s)	524
BsiEI	CGRYCG	2 cut(s)	987, 1239
BsiHKCI	CYCGRG	1 cut(s)	1283
BsiSI	CCGG	2 cut(s)	888, 1155
BslFI	GGGAC	1 cut(s)	1079
BslI	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 1033
BsmAI	GTCTC	3 cut(s)	43, 241, 260
BsmFI	GGGAC	1 cut(s)	1079
BsmI	GAATGC	2 cut(s)	984, 1220
BsnI	GGCC	4 cut(s)	366, 407, 544, 1238
Bso31I	GGTCTC	2 cut(s)	43, 260
BsoBI	CYCGRG	1 cut(s)	1283
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	396
Bsp1720I	GCTNAGC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	2 cut(s)	1235, 1239
BspANI	GGCC	4 cut(s)	366, 407, 544, 1238
BspCNI	CTCAG	8 cut(s)	83, 227, 287, 394, 423, 538, 546, 1212
BspLI	GGNNCC	5 cut(s)	313, 425, 526, 1153, 1267
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	854
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	43, 260
BsrFI	RCCGGY	1 cut(s)	1154
BsrI	ACTGG	4 cut(s)	38, 469, 872, 1153
BssAI	RCCGGY	1 cut(s)	1154
BssECI	CCNNGG	4 cut(s)	255, 294, 385, 912
BssMI	GATC	1 cut(s)	396
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	255, 385
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	5 cut(s)	296, 320, 368, 431, 914
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	338, 342, 471, 1280
BstDEI	CTNAG	8 cut(s)	70, 214, 274, 402, 410, 546, 554, 1220
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	5 cut(s)	385, 421, 709, 811, 889
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	3 cut(s)	43, 241, 260
BstMBI	GATC	1 cut(s)	396
BstMCI	CGRYCG	2 cut(s)	987, 1239
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 860, 1178, 1235, 1238
BstNI	CCWGG	5 cut(s)	296, 320, 368, 431, 914
BstNSI	RCATGY	2 cut(s)	473, 1282
BstSCI	CCNGG	5 cut(s)	294, 318, 366, 429, 912
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	8 cut(s)	310, 439, 442, 588, 838, 1114, 1219, 1241
BstZI	CGGCCG	1 cut(s)	1236
Bsu36I	CCTNAGG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	4 cut(s)	366, 407, 544, 1238
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	5 cut(s)	385, 421, 709, 811, 889
BtsIMutI	CAGTG	4 cut(s)	31, 167, 399, 462
BveI	ACCTGC	1 cut(s)	854
Cac8I	GCNNGC	4 cut(s)	338, 342, 471, 1280
CaiI	CAGNNNCTG	1 cut(s)	295
CciNI	GCGGCCGC	1 cut(s)	1236
Cfr10I	RCCGGY	1 cut(s)	1154
Cfr13I	GGNCC	3 cut(s)	364, 406, 424
Csp6I	GTAC	2 cut(s)	869, 1136
CviAII	CATG	6 cut(s)	386, 470, 532, 700, 802, 1279
CviQI	GTAC	2 cut(s)	869, 1136
DdeI	CTNAG	8 cut(s)	70, 214, 274, 402, 410, 546, 554, 1220
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
DriI	GACNNNNNGTC	1 cut(s)	1072
EaeI	YGGCCR	1 cut(s)	1236
EagI	CGGCCG	1 cut(s)	1236
Eam1105I	GACNNNNNGTC	1 cut(s)	1072
EclXI	CGGCCG	1 cut(s)	1236
Eco130I	CCWWGG	2 cut(s)	255, 385
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	2 cut(s)	43, 260
Eco47I	GGWCC	1 cut(s)	424
Eco52I	CGGCCG	1 cut(s)	1236
Eco81I	CCTNAGG	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	1283
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRI	GAATTC	2 cut(s)	648, 750
EcoRII	CCWGG	5 cut(s)	294, 318, 366, 429, 912
EcoT14I	CCWWGG	2 cut(s)	255, 385
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	255, 385
FaeI	CATG	6 cut(s)	389, 473, 535, 703, 805, 1282
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	1 cut(s)	1079
FatI	CATG	6 cut(s)	385, 469, 531, 699, 801, 1278
FbaI	TGATCA	1 cut(s)	396
FokI	GGATG	5 cut(s)	392, 428, 716, 818, 896
FriOI	GRGCYC	1 cut(s)	215
FspBI	CTAG	4 cut(s)	143, 444, 1052, 1275
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	1170
HaeIII	GGCC	4 cut(s)	366, 407, 544, 1238
HapII	CCGG	2 cut(s)	888, 1155
Hin1II	CATG	6 cut(s)	389, 473, 535, 703, 805, 1282
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	4 cut(s)	146, 249, 613, 1303
HpaII	CCGG	2 cut(s)	888, 1155
HphI	GGTGA	7 cut(s)	12, 172, 275, 490, 503, 1106, 1169
Hpy166II	GTNNAC	4 cut(s)	427, 628, 869, 1167
Hpy188I	TCNGA	2 cut(s)	73, 291
Hpy188III	TCNNGA	4 cut(s)	377, 617, 743, 845
Hpy8I	GTNNAC	4 cut(s)	427, 628, 869, 1167
HpyAV	CCTTC	2 cut(s)	1085, 1255
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 860, 1178, 1235, 1238
HpyF3I	CTNAG	8 cut(s)	70, 214, 274, 402, 410, 546, 554, 1220
HpySE526I	ACGT	1 cut(s)	1163
Hsp92II	CATG	6 cut(s)	389, 473, 535, 703, 805, 1282
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	4 cut(s)	311, 916, 1151, 1265
Lsp1109I	GCAGC	8 cut(s)	310, 439, 442, 588, 838, 1114, 1219, 1241
LweI	GCATC	2 cut(s)	370, 874
MaeI	CTAG	4 cut(s)	143, 444, 1052, 1275
MaeII	ACGT	1 cut(s)	1163
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	2 cut(s)	1298, 1301
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	7 cut(s)	64, 104, 648, 735, 750, 837, 1104
MlyI	GAGTC	2 cut(s)	140, 243
MroXI	GAANNNNTTC	3 cut(s)	738, 750, 840
MseI	TTAA	4 cut(s)	725, 827, 1041, 1107
MspA1I	CMGCKG	1 cut(s)	1232
MspI	CCGG	2 cut(s)	888, 1155
MspR9I	CCNGG	5 cut(s)	296, 320, 368, 431, 914
Mva1269I	GAATGC	2 cut(s)	984, 1220
MvaI	CCWGG	5 cut(s)	296, 320, 368, 431, 914
MwoI	GCNNNNNNNGC	5 cut(s)	320, 860, 1178, 1235, 1238
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	6 cut(s)	389, 473, 535, 703, 805, 1282
NlaIV	GGNNCC	5 cut(s)	313, 425, 526, 1153, 1267
NotI	GCGGCCGC	1 cut(s)	1236
NspI	RCATGY	2 cut(s)	473, 1282
PaeI	GCATGC	2 cut(s)	473, 1282
PaqCI	CACCTGC	1 cut(s)	854
PctI	GAATGC	2 cut(s)	984, 1220
PdmI	GAANNNNTTC	3 cut(s)	738, 750, 840
PfeI	GAWTC	2 cut(s)	613, 1303
PflMI	CCANNNNNTGG	1 cut(s)	1033
PleI	GAGTC	2 cut(s)	140, 243
PpsI	GAGTC	2 cut(s)	140, 243
Psp6I	CCWGG	5 cut(s)	294, 318, 366, 429, 912
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	5 cut(s)	294, 318, 366, 429, 912
PspN4I	GGNNCC	5 cut(s)	313, 425, 526, 1153, 1267
PspPI	GGNCC	3 cut(s)	364, 406, 424
PstI	CTGCAG	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	1232
RsaI	GTAC	2 cut(s)	870, 1137
RsaNI	GTAC	2 cut(s)	869, 1136
SaqAI	TTAA	4 cut(s)	725, 827, 1041, 1107
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	3 cut(s)	364, 406, 424
ScaI	AGTACT	1 cut(s)	1137
SchI	GAGTC	2 cut(s)	140, 243
ScrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 914
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	2 cut(s)	370, 874
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	424
SpeI	ACTAGT	1 cut(s)	443
SphI	GCATGC	2 cut(s)	473, 1282
Sse9I	AATT	7 cut(s)	64, 104, 648, 735, 750, 837, 1104
SsiI	CCGC	2 cut(s)	1235, 1239
SspMI	CTAG	4 cut(s)	143, 444, 1052, 1275
StyD4I	CCNGG	5 cut(s)	294, 318, 366, 429, 912
StyI	CCWWGG	2 cut(s)	255, 385
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	1166
TaqII	GACCGA	1 cut(s)	1001
TasI	AATT	7 cut(s)	64, 104, 648, 735, 750, 837, 1104
TatI	WGTACW	1 cut(s)	1135
TauI	GCSGC	2 cut(s)	1238, 1241
TfiI	GAWTC	2 cut(s)	613, 1303
Tru1I	TTAA	4 cut(s)	725, 827, 1041, 1107
Tru9I	TTAA	4 cut(s)	725, 827, 1041, 1107
TscAI	CASTG	4 cut(s)	38, 174, 406, 469
TseI	GCWGC	8 cut(s)	323, 452, 455, 601, 851, 1127, 1229, 1232
TspDTI	ATGAA	2 cut(s)	966, 1113
TspRI	CASTG	4 cut(s)	38, 174, 406, 469
Van91I	CCANNNNNTGG	1 cut(s)	1033
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	5 cut(s)	64, 648, 735, 750, 837
XceI	RCATGY	2 cut(s)	473, 1282
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 514
XmnI	GAANNNNTTC	3 cut(s)	738, 750, 840
XspI	CTAG	4 cut(s)	143, 444, 1052, 1275
ZrmI	AGTACT	1 cut(s)	1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.