Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Forward (+)

8842568 .. 8847381

Gene Structure 4814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G154400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGTGCCATGAGAGCGGTAGCATTTTCACCATCAAATCAATGGTACGATAAAATCCAAACCCATTTCTCAAACCACCCAAACAGAGCAATCAACACAAACCCACATCTTCAATTCAACAACACCACCCAAAACCAATCCAATAGAAGAAACCTATTTCCCTGTTTCTCCACAGATGCATCAAAAACTCCAAACCCACCAACCCCTCTCACCATCACAAGCTCGCCTCTTGTTGTAGTGGGCTCAGCCAATGCAGACATCTATGTGGAGATTGACAGGCTGCCCAAAGAAGGCGAGACCATTTCAGCCAAGAATGGCCAGACCCTGGCTGGTGGCAAAGGCGCCAACCAGGCTGCCTGTGGAGGCAAGCTTTCTTACCCAACATACTTTGTGGGTCAGGTGGGTGAAGATGCCCATGGGAAGCTGATCACTGAGGCTCTGCAGAGTGGTGGGGTCCACCTTGATCACTTGAGTGCTGTTTCTGCTGCACCCACTGGGCATGCTGTGGTGATGTTGCAATCTGATGGGCAAAACTCCATCATCATTGTTGGTGGTGCCAACATGCACTGCTGGCCTGAGAAGCTTTCTGATGAGGATTTGGAGGTTGTGAGGAATGCTGGGATTGTTTTGCTTCAGAGGGAGATCCCAGAATCGGTCAACACTCAGGTTGCAAAGGCTTTTTGTTCTGTTTTTCTTGCAAGACATTTCCTTCAGTTTGTTGATCAGAATGCGGCAGGAAGATCAAAGGCTGCCAAGAGTGCAGGCGTACCAGTCATTTTGGATGCTGGAGGAATGGAGGCACCAATCTCCCAGGAATTATTGAACTTTGTTGATATTTTGAGCCCAAATGAAACTGAGCTTCGTCGTTTGACAGGAATGCCAACTGAAAGCTTTGAACAGATTAGTCATGCTGTGGTGAAATTTCATAAAATGGGTGTTAAGCAAGTCCTAGTGAAGCTTGGGTCCAAAGGGTCTGCTCTATTTGTAGAAGGTGAAGAACCAATTAAACAATCTGTCATCTCTGCTGCAAAAGTACTCGATACAACTGGAGCTGGTGATACGTTTACTGCCTCTTTTGCGGTGGCTCTTGTGGAGGGCAAGTCCAAAAGGGAGTGCTTGAGATTTGCGGCTGCGGCAGCTTCTCTTTGTGTTCAAGTGAAAGGAGCCATTCCTAGCATGCCAGAGAGAAAATCAGTTTTGAATCTTCTTCAGTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

407

Amino Acids

43.28

Weight (kDa)

7.19

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	341, 554, 799
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	17
AciI	CCGC	5 cut(s)	17, 731, 1079, 1127, 1133
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	920
AcuI	CTGAAG	3 cut(s)	617, 695, 1193
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	3 cut(s)	47, 768, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	290, 325, 652
AgsI	TTSAA	6 cut(s)	113, 118, 823, 896, 1154, 1201
AjnI	CCWGG	3 cut(s)	324, 348, 810
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	9 cut(s)	222, 370, 424, 583, 859, 891, 958, 1052, 1139
AluI	AGCT	9 cut(s)	222, 370, 424, 583, 859, 891, 958, 1052, 1139
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	637
AlwNI	CAGNNNCTG	1 cut(s)	325
AoxI	GGCC	2 cut(s)	316, 572
ApeKI	GCWGC	7 cut(s)	280, 353, 485, 749, 1025, 1130, 1136
ApoI	RAATTY	1 cut(s)	920
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	454, 963
AsuHPI	GGTGA	7 cut(s)	21, 202, 416, 520, 928, 1004, 1067
AvaII	GGWCC	2 cut(s)	454, 963
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	3 cut(s)	341, 554, 799
BanII	GRGCYC	2 cut(s)	245, 845
BbvI	GCAGC	7 cut(s)	267, 340, 472, 736, 1012, 1117, 1148
BccI	CCATC	4 cut(s)	40, 221, 518, 545
BciT130I	CCWGG	3 cut(s)	326, 350, 812
BclI	TGATCA	3 cut(s)	426, 463, 721
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	2 cut(s)	950, 1173
BfmI	CTRYAG	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	1035
Bme1390I	CCNGG	3 cut(s)	326, 350, 812
Bme18I	GGWCC	2 cut(s)	454, 963
BmgT120I	GGNCC	2 cut(s)	454, 963
BmiI	GGNNCC	6 cut(s)	343, 455, 556, 801, 964, 1165
BmrFI	CCNGG	3 cut(s)	326, 350, 812
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	4 cut(s)	166, 188, 400, 772
BmuI	ACTGGG	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	807, 1068
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	490, 1138
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	324, 415, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	1085, 1115
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 325, 652
Bse1I	ACTGG	3 cut(s)	499, 770, 1051
BseBI	CCWGG	3 cut(s)	326, 350, 812
BseDI	CCNNGG	3 cut(s)	324, 415, 810
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	3 cut(s)	290, 325, 652
BseMII	CTCAG	5 cut(s)	258, 423, 567, 677, 846
BseNI	ACTGG	3 cut(s)	499, 770, 1051
BseXI	GCAGC	7 cut(s)	267, 340, 472, 736, 1012, 1117, 1148
BseYI	CCCAGC	1 cut(s)	617
BsgI	GTGCAG	2 cut(s)	471, 780
BshFI	GGCC	2 cut(s)	318, 574
BshNI	GGYRCC	3 cut(s)	341, 554, 799
BslI	CCNNNNNNNGG	3 cut(s)	290, 325, 652
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	3 cut(s)	619, 733, 882
BsnI	GGCC	2 cut(s)	318, 574
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	245, 845
Bsp143I	GATC	5 cut(s)	426, 463, 642, 721, 740
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	5 cut(s)	17, 731, 1079, 1127, 1133
BspANI	GGCC	2 cut(s)	318, 574
BspCNI	CTCAG	5 cut(s)	257, 424, 568, 676, 847
BspLI	GGNNCC	6 cut(s)	343, 455, 556, 801, 964, 1165
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	1 cut(s)	637
BspT107I	GGYRCC	3 cut(s)	341, 554, 799
BspTNI	GGTCTC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	499, 770, 1051
BssECI	CCNNGG	3 cut(s)	324, 415, 810
BssMI	GATC	5 cut(s)	426, 463, 642, 721, 740
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	3 cut(s)	326, 350, 812
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	6 cut(s)	224, 368, 501, 572, 763, 1178
BstDEI	CTNAG	5 cut(s)	244, 432, 576, 663, 855
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	787
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	5 cut(s)	429, 466, 645, 724, 743
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	5 cut(s)	426, 463, 642, 721, 740
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 350, 482, 571, 580, 758, 1076, 1133, 1136
BstNI	CCWGG	3 cut(s)	326, 350, 812
BstNSI	RCATGY	3 cut(s)	503, 565, 1180
BstSCI	CCNGG	3 cut(s)	324, 348, 810
BstSFI	CTRYAG	1 cut(s)	440
BstV1I	GCAGC	7 cut(s)	267, 340, 472, 736, 1012, 1117, 1148
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	318, 574
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	3 cut(s)	429, 492, 565
Cac8I	GCNNGC	6 cut(s)	224, 368, 501, 572, 763, 1178
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	454, 963
Csp6I	GTAC	3 cut(s)	46, 767, 1034
CviAII	CATG	6 cut(s)	10, 416, 500, 562, 908, 1177
CviQI	GTAC	3 cut(s)	46, 767, 1034
DdeI	CTNAG	5 cut(s)	244, 432, 576, 663, 855
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	5 cut(s)	428, 465, 644, 723, 742
DpnII	GATC	5 cut(s)	426, 463, 642, 721, 740
EaeI	YGGCCR	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	2 cut(s)	245, 845
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	454, 963
Eco57I	CTGAAG	3 cut(s)	617, 695, 1193
EcoRII	CCWGG	3 cut(s)	324, 348, 810
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	245, 845
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	6 cut(s)	13, 419, 503, 565, 911, 1180
FaiI	YATR	9 cut(s)	11, 264, 385, 417, 501, 563, 909, 927, 1178
FatI	CATG	6 cut(s)	9, 415, 499, 561, 907, 1176
FbaI	TGATCA	3 cut(s)	426, 463, 721
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	2 cut(s)	245, 845
FspBI	CTAG	2 cut(s)	950, 1173
GlaI	GCGC	1 cut(s)	343
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	2 cut(s)	807, 1068
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	318, 574
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	6 cut(s)	13, 419, 503, 565, 911, 1180
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	4 cut(s)	368, 581, 889, 956
HinfI	GANTC	2 cut(s)	650, 1201
HphI	GGTGA	7 cut(s)	21, 202, 416, 520, 928, 1004, 1067
Hpy166II	GTNNAC	3 cut(s)	457, 658, 1065
Hpy188I	TCNGA	4 cut(s)	523, 589, 636, 726
Hpy8I	GTNNAC	3 cut(s)	457, 658, 1065
Hpy99I	CGWCG	1 cut(s)	867
HpyAV	CCTTC	3 cut(s)	284, 719, 983
HpyCH4IV	ACGT	1 cut(s)	1061
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 350, 482, 571, 580, 758, 1076, 1133, 1136
HpyF3I	CTNAG	5 cut(s)	244, 432, 576, 663, 855
HpySE526I	ACGT	1 cut(s)	1061
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	6 cut(s)	13, 419, 503, 565, 911, 1180
HspAI	GCGC	1 cut(s)	342
KasI	GGCGCC	1 cut(s)	341
Ksp22I	TGATCA	3 cut(s)	426, 463, 721
Kzo9I	GATC	5 cut(s)	426, 463, 642, 721, 740
LmnI	GCTCC	2 cut(s)	1049, 1163
Lsp1109I	GCAGC	7 cut(s)	267, 340, 472, 736, 1012, 1117, 1148
LweI	GCATC	4 cut(s)	166, 188, 400, 772
MaeI	CTAG	2 cut(s)	950, 1173
MaeII	ACGT	1 cut(s)	1061
MalI	GATC	5 cut(s)	428, 465, 644, 723, 742
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	5 cut(s)	426, 463, 642, 721, 740
MboII	GAAGA	7 cut(s)	101, 159, 419, 750, 1007, 1196, 1199
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	245, 845
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	4 cut(s)	113, 815, 920, 1002
MluNI	TGGCCA	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	2 cut(s)	939, 1005
MslI	CAYNNNNRTG	2 cut(s)	263, 471
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	326, 350, 812
Mva1269I	GAATGC	3 cut(s)	619, 733, 882
MvaI	CCWGG	3 cut(s)	326, 350, 812
MwoI	GCNNNNNNNGC	9 cut(s)	14, 350, 482, 571, 580, 758, 1076, 1133, 1136
NarI	GGCGCC	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	5 cut(s)	426, 463, 642, 721, 740
NlaIII	CATG	6 cut(s)	13, 419, 503, 565, 911, 1180
NlaIV	GGNNCC	6 cut(s)	343, 455, 556, 801, 964, 1165
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	3 cut(s)	503, 565, 1180
OliI	CACNNNNGTG	1 cut(s)	471
PaeI	GCATGC	2 cut(s)	503, 1180
PctI	GAATGC	3 cut(s)	619, 733, 882
PfeI	GAWTC	2 cut(s)	650, 1201
PflMI	CCANNNNNTGG	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	324, 348, 810
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	324, 348, 810
PspN4I	GGNNCC	6 cut(s)	343, 455, 556, 801, 964, 1165
PspPI	GGNCC	2 cut(s)	454, 963
PstI	CTGCAG	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	3 cut(s)	47, 768, 1035
RsaNI	GTAC	3 cut(s)	46, 767, 1034
RseI	CAYNNNNRTG	2 cut(s)	263, 471
SaqAI	TTAA	2 cut(s)	939, 1005
Sau3AI	GATC	5 cut(s)	426, 463, 642, 721, 740
Sau96I	GGNCC	2 cut(s)	454, 963
ScaI	AGTACT	1 cut(s)	1035
ScrFI	CCNGG	3 cut(s)	326, 350, 812
SduI	GDGCHC	2 cut(s)	245, 845
SfaNI	GCATC	4 cut(s)	166, 188, 400, 772
SfcI	CTRYAG	1 cut(s)	440
SfoI	GGCGCC	1 cut(s)	343
SinI	GGWCC	2 cut(s)	454, 963
SmiMI	CAYNNNNRTG	2 cut(s)	263, 471
SmlI	CTYRAG	2 cut(s)	469, 1117
SmoI	CTYRAG	2 cut(s)	469, 1117
SphI	GCATGC	2 cut(s)	503, 1180
Sse9I	AATT	4 cut(s)	113, 815, 920, 1002
SsiI	CCGC	5 cut(s)	17, 731, 1079, 1127, 1133
SspDI	GGCGCC	1 cut(s)	341
SspMI	CTAG	2 cut(s)	950, 1173
StyD4I	CCNGG	3 cut(s)	324, 348, 810
StyI	CCWWGG	1 cut(s)	415
TaiI	ACGT	1 cut(s)	1064
TaqI	TCGA	1 cut(s)	1038
TaqII	GACCGA	1 cut(s)	643
TasI	AATT	4 cut(s)	113, 815, 920, 1002
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	3 cut(s)	734, 1130, 1136
TfiI	GAWTC	2 cut(s)	650, 1201
Tru1I	TTAA	2 cut(s)	939, 1005
Tru9I	TTAA	2 cut(s)	939, 1005
TscAI	CASTG	3 cut(s)	436, 499, 572
TseI	GCWGC	7 cut(s)	280, 353, 485, 749, 1025, 1130, 1136
TspDTI	ATGAA	2 cut(s)	864, 914
TspRI	CASTG	3 cut(s)	436, 499, 572
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	454, 963
XapI	RAATTY	1 cut(s)	920
XceI	RCATGY	3 cut(s)	503, 565, 1180
XcmI	CCANNNNNNNNNTGG	3 cut(s)	39, 326, 356
XspI	CTAG	2 cut(s)	950, 1173
ZrmI	AGTACT	1 cut(s)	1035
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.