Rw5G018480

Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
23879598 .. 23883879
4282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018480.1

Sequence Viewer

Length: 1119 bp
ATGAGAGCAATAGCGTTTTCACCCTCCCAACAATGGGACGCCAAAATCCAAACCCATCTCCCAAATCCCTCAAACACACCAATCAACACCAACCCAAATCTCCAATTCAAAACCACAAGACACCCACTTCCCTGTTTCTCCCTAGACTCATCAAAATCCCAAACCCCACTGACCCCAATCACCCCCACAACCCCACCCCTCGTGGTGGTGGGCTCAGCCAATGCAGACATCTATGTTGAGATTGAGAGACTCCCCAAGGAGGGTGAGACCATCTCAGCCAAAACAGGTCAGACCCTGGCTGGGGGCAAAGGAGCCAACCAGGCTGCCTGTGGTGGCAAGCTGGCTTACCCAACCTACTTTGTGGGCCAGGTGGGTCAGGATGCCCATGGCAAACTGGTCACTGAGGCCCTCAGGGGTGGTGGGGTCCACCTGGATCACCTGACTAGTGTGGCTGCTGCACCCACTGGGCATGCTGTGGTGATGTTGCAGAGTGATGGGCAGAACTCCATCATCATTGTGGGTGGCGCCAACATGAGGTGTTGGCCTGAGAGGCTGAGTGATGAGGATTTGAGGGTTGTGAGGAGTGCTGGGATTGTTTTGCTTCAGAGGGAGATTCCAGAAGTGGTCAACATTCAGGTTGCAAAGGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCCGGAGGAATGGATACACCAATCTCCCAGGAGTTATTGAACTATGTTGATATTTTGAGCCCAAATGAAAGTGAGCTTGGTCGTTTGACAGGAATGCCGACCGAAAGCTTTGAACAGATTAGTAATGCCGTTGTCAAATGCCATAAAATGGGTGTTAAGCAAGTCCTAGTAAAACTTGGGGACAAAGGGTCTGCTCTATTTGTAGAAGGTGATGAACCAATTAAACAACCTGTCATATCTGCTGCGAAAGTACTTGATACTACTGGAGCCGGTGATACGTTTACTGCCTCTTTTGCTGTTGCTTTTGTGGAGGGCAAGTCCATAAAGGAATGCCTGAGATTTGCAGCTGCTGCCGCTTCTCTTTGTGTTCAAGTGAAGGGAGCCATTCCTAGCATGCCCGAGAGGAAATCAGTTTTGAATCTTCTTCAATCTCTTTGA

Protein Analysis

372

Amino Acids

39.2

Weight (kDa)

6.66

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 67 - 361 2.7e-63 pfkB family carbohydrate kinase
Phos_pyr_kin PF08543 235 - 344 1.1e-10 Phosphomethylpyrimidine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 650
Acc36I ACCTGC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 524
AccB7I CCANNNNNTGG 1 cut(s) 829
AciI CCGC 1 cut(s) 1035
AclWI GGATC 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 2 cut(s) 39, 525
AfaI GTAC 2 cut(s) 666, 933
AfiI CCNNNNNNNGG 9 cut(s) 33, 34, 205, 259, 260, 300, 301, 534, 829
AgsI TTSAA 6 cut(s) 109, 721, 794, 1052, 1099, 1109
AhdI GACNNNNNGTC 1 cut(s) 868
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 5 cut(s) 294, 318, 366, 429, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 4 cut(s) 340, 757, 789, 1028
AluI AGCT 4 cut(s) 340, 757, 789, 1028
Alw26I GTCTC 2 cut(s) 241, 260
AlwI GGATC 1 cut(s) 441
AlwNI CAGNNNCTG 2 cut(s) 295, 1031
Ama87I CYCGRG 1 cut(s) 1079
AoxI GGCC 3 cut(s) 364, 405, 542
ApeKI GCWGC 8 cut(s) 323, 452, 455, 647, 923, 1025, 1028, 1031
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 3 cut(s) 364, 406, 424
AsuHPI GGTGA 7 cut(s) 12, 172, 275, 428, 490, 902, 965
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 410
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 2 cut(s) 215, 743
BauI CACGAG 1 cut(s) 200
BbvI GCAGC 8 cut(s) 310, 439, 442, 634, 910, 1015, 1018, 1037
BccI CCATC 4 cut(s) 63, 278, 488, 515
BceAI ACGGC 1 cut(s) 794
BciT130I CCWGG 5 cut(s) 296, 320, 368, 431, 710
BciVI GTATCC 1 cut(s) 688
BcoDI GTCTC 2 cut(s) 241, 260
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 4 cut(s) 143, 444, 848, 1071
BfoI RGCGCY 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 650
BfuI GTATCC 1 cut(s) 688
BglI GCCNNNNNGGC 2 cut(s) 320, 550
BisI GCNGC 9 cut(s) 324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 9 cut(s) 325, 454, 457, 649, 925, 1027, 1030, 1033, 1036
BmcAI AGTACT 1 cut(s) 933
Bme1390I CCNGG 5 cut(s) 296, 320, 368, 431, 710
Bme18I GGWCC 1 cut(s) 424
BmeRI GACNNNNNGTC 1 cut(s) 868
BmeT110I CYCGRG 1 cut(s) 1079
BmgT120I GGNCC 3 cut(s) 364, 406, 424
BmiI GGNNCC 5 cut(s) 313, 425, 526, 949, 1063
BmrFI CCNGG 5 cut(s) 296, 320, 368, 431, 710
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 370, 670
BmuI ACTGGG 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 966
Bpu1102I GCTNAGC 1 cut(s) 214
BsaHI GRCGYC 2 cut(s) 39, 525
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 4 cut(s) 255, 294, 385, 708
BsaXI ACNNNNNCTCC 2 cut(s) 983, 1013
Bsc4I CCNNNNNNNGG 9 cut(s) 33, 34, 205, 259, 260, 300, 301, 534, 829
Bse118I RCCGGY 1 cut(s) 950
Bse1I ACTGG 4 cut(s) 399, 469, 668, 949
Bse21I CCTNAGG 1 cut(s) 410
BseBI CCWGG 5 cut(s) 296, 320, 368, 431, 710
BseDI CCNNGG 4 cut(s) 255, 294, 385, 708
BseGI GGATG 2 cut(s) 385, 685
BseLI CCNNNNNNNGG 9 cut(s) 33, 34, 205, 259, 260, 300, 301, 534, 829
BseMII CTCAG 7 cut(s) 228, 288, 393, 424, 537, 545, 1007
BseNI ACTGG 4 cut(s) 399, 469, 668, 949
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 8 cut(s) 310, 439, 442, 634, 910, 1015, 1018, 1037
BseYI CCCAGC 2 cut(s) 299, 587
BsgI GTGCAG 2 cut(s) 441, 678
Bsh1285I CGRYCG 1 cut(s) 783
BshFI GGCC 3 cut(s) 366, 407, 544
BshNI GGYRCC 1 cut(s) 524
BsiEI CGRYCG 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 2 cut(s) 684, 951
BslFI GGGAC 2 cut(s) 50, 875
BslI CCNNNNNNNGG 9 cut(s) 33, 34, 205, 259, 260, 300, 301, 534, 829
BsmAI GTCTC 2 cut(s) 241, 260
BsmFI GGGAC 2 cut(s) 50, 875
BsmI GAATGC 2 cut(s) 780, 1016
BsnI GGCC 3 cut(s) 366, 407, 544
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 2 cut(s) 215, 743
Bsp143I GATC 1 cut(s) 433
Bsp1720I GCTNAGC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 1 cut(s) 1035
BspANI GGCC 3 cut(s) 366, 407, 544
BspCNI CTCAG 7 cut(s) 227, 287, 394, 423, 538, 546, 1008
BspLI GGNNCC 5 cut(s) 313, 425, 526, 949, 1063
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 950
BsrI ACTGG 4 cut(s) 399, 469, 668, 949
BssAI RCCGGY 1 cut(s) 950
BssECI CCNNGG 4 cut(s) 255, 294, 385, 708
BssMI GATC 1 cut(s) 433
BssNI GRCGYC 2 cut(s) 39, 525
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 255, 385
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 5 cut(s) 296, 320, 368, 431, 710
BstACI GRCGYC 2 cut(s) 39, 525
BstAPI GCANNNNNTGC 2 cut(s) 647, 1031
BstC8I GCNNGC 4 cut(s) 338, 342, 471, 1076
BstDEI CTNAG 7 cut(s) 214, 274, 402, 410, 546, 554, 1016
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 2 cut(s) 385, 685
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 2 cut(s) 241, 260
BstMBI GATC 1 cut(s) 433
BstMCI CGRYCG 1 cut(s) 783
BstMWI GCNNNNNNNGC 7 cut(s) 320, 550, 647, 656, 974, 1031, 1034
BstNI CCWGG 5 cut(s) 296, 320, 368, 431, 710
BstNSI RCATGY 2 cut(s) 473, 1078
BstSCI CCNGG 5 cut(s) 294, 318, 366, 429, 708
BstV1I GCAGC 8 cut(s) 310, 439, 442, 634, 910, 1015, 1018, 1037
Bsu36I CCTNAGG 1 cut(s) 410
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 3 cut(s) 366, 407, 544
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 2 cut(s) 385, 685
BtsIMutI CAGTG 3 cut(s) 167, 399, 462
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 4 cut(s) 338, 342, 471, 1076
CaiI CAGNNNCTG 2 cut(s) 295, 1031
CfoI GCGC 1 cut(s) 527
Cfr10I RCCGGY 1 cut(s) 950
Cfr13I GGNCC 3 cut(s) 364, 406, 424
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 665, 932
CviAII CATG 4 cut(s) 386, 470, 532, 1075
CviQI GTAC 2 cut(s) 665, 932
DdeI CTNAG 7 cut(s) 214, 274, 402, 410, 546, 554, 1016
DinI GGCGCC 1 cut(s) 526
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DriI GACNNNNNGTC 1 cut(s) 868
Eam1105I GACNNNNNGTC 1 cut(s) 868
Eco130I CCWWGG 2 cut(s) 255, 385
Eco24I GRGCYC 2 cut(s) 215, 743
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 587
Eco81I CCTNAGG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 1079
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 5 cut(s) 294, 318, 366, 429, 708
EcoT14I CCWWGG 2 cut(s) 255, 385
EcoT38I GRGCYC 2 cut(s) 215, 743
EgeI GGCGCC 1 cut(s) 526
EheI GGCGCC 1 cut(s) 526
ErhI CCWWGG 2 cut(s) 255, 385
FaeI CATG 4 cut(s) 389, 473, 535, 1078
FaiI YATR 9 cut(s) 234, 387, 471, 533, 726, 825, 917, 1004, 1076
FaqI GGGAC 2 cut(s) 50, 875
FatI CATG 4 cut(s) 385, 469, 531, 1074
Fnu4HI GCNGC 9 cut(s) 324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
FokI GGATG 2 cut(s) 392, 692
FriOI GRGCYC 2 cut(s) 215, 743
Fsp4HI GCNGC 9 cut(s) 324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
FspBI CTAG 4 cut(s) 143, 444, 848, 1071
GlaI GCGC 1 cut(s) 526
GluI GCNGC 9 cut(s) 324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
GsaI CCCAGC 2 cut(s) 303, 591
GsuI CTGGAG 1 cut(s) 966
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 3 cut(s) 366, 407, 544
HapII CCGG 2 cut(s) 684, 951
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 527
Hin1I GRCGYC 2 cut(s) 39, 525
Hin1II CATG 4 cut(s) 389, 473, 535, 1078
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 787
HinfI GANTC 4 cut(s) 146, 249, 613, 1099
HpaII CCGG 2 cut(s) 684, 951
HphI GGTGA 7 cut(s) 12, 172, 275, 428, 490, 902, 965
Hpy166II GTNNAC 4 cut(s) 427, 628, 665, 963
Hpy188I TCNGA 2 cut(s) 291, 606
Hpy188III TCNNGA 2 cut(s) 377, 617
Hpy8I GTNNAC 4 cut(s) 427, 628, 665, 963
HpyAV CCTTC 2 cut(s) 881, 1051
HpyCH4IV ACGT 1 cut(s) 959
HpyCH4V TGCA 6 cut(s) 224, 458, 487, 641, 659, 1025
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 550, 647, 656, 974, 1031, 1034
HpyF3I CTNAG 7 cut(s) 214, 274, 402, 410, 546, 554, 1016
HpySE526I ACGT 1 cut(s) 959
Hsp92I GRCGYC 2 cut(s) 39, 525
Hsp92II CATG 4 cut(s) 389, 473, 535, 1078
HspAI GCGC 1 cut(s) 525
KasI GGCGCC 1 cut(s) 524
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 3 cut(s) 311, 947, 1061
Lsp1109I GCAGC 8 cut(s) 310, 439, 442, 634, 910, 1015, 1018, 1037
LweI GCATC 2 cut(s) 370, 670
MaeI CTAG 4 cut(s) 143, 444, 848, 1071
MaeII ACGT 1 cut(s) 959
MaeIII GTNAC 1 cut(s) 397
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 2 cut(s) 1094, 1097
MhlI GDGCHC 2 cut(s) 215, 743
MluCI AATT 2 cut(s) 104, 900
Mly113I GGCGCC 1 cut(s) 525
MlyI GAGTC 2 cut(s) 140, 243
MseI TTAA 2 cut(s) 837, 903
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 2 cut(s) 684, 951
MspR9I CCNGG 5 cut(s) 296, 320, 368, 431, 710
Mva1269I GAATGC 2 cut(s) 780, 1016
MvaI CCWGG 5 cut(s) 296, 320, 368, 431, 710
MwoI GCNNNNNNNGC 7 cut(s) 320, 550, 647, 656, 974, 1031, 1034
NarI GGCGCC 1 cut(s) 525
NcoI CCATGG 1 cut(s) 385
NdeII GATC 1 cut(s) 433
NlaIII CATG 4 cut(s) 389, 473, 535, 1078
NlaIV GGNNCC 5 cut(s) 313, 425, 526, 949, 1063
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 2 cut(s) 473, 1078
PaeI GCATGC 2 cut(s) 473, 1078
PaqCI CACCTGC 1 cut(s) 650
PctI GAATGC 2 cut(s) 780, 1016
PfeI GAWTC 2 cut(s) 613, 1099
PflMI CCANNNNNTGG 1 cut(s) 829
PkrI GCNGC 9 cut(s) 325, 454, 457, 649, 925, 1027, 1030, 1033, 1036
PleI GAGTC 2 cut(s) 140, 243
PluTI GGCGCC 1 cut(s) 528
PpsI GAGTC 2 cut(s) 140, 243
Psp6I CCWGG 5 cut(s) 294, 318, 366, 429, 708
PspFI CCCAGC 2 cut(s) 299, 587
PspGI CCWGG 5 cut(s) 294, 318, 366, 429, 708
PspN4I GGNNCC 5 cut(s) 313, 425, 526, 949, 1063
PspPI GGNCC 3 cut(s) 364, 406, 424
PstNI CAGNNNCTG 2 cut(s) 295, 1031
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 2 cut(s) 666, 933
RsaNI GTAC 2 cut(s) 665, 932
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 2 cut(s) 837, 903
SatI GCNGC 9 cut(s) 324, 453, 456, 648, 924, 1026, 1029, 1032, 1035
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 3 cut(s) 364, 406, 424
ScaI AGTACT 1 cut(s) 933
SchI GAGTC 2 cut(s) 140, 243
ScrFI CCNGG 5 cut(s) 296, 320, 368, 431, 710
SduI GDGCHC 2 cut(s) 215, 743
SfaNI GCATC 2 cut(s) 370, 670
SfoI GGCGCC 1 cut(s) 526
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 443
SphI GCATGC 2 cut(s) 473, 1078
Sse9I AATT 2 cut(s) 104, 900
SsiI CCGC 1 cut(s) 1035
SspDI GGCGCC 1 cut(s) 524
SspMI CTAG 4 cut(s) 143, 444, 848, 1071
StyD4I CCNGG 5 cut(s) 294, 318, 366, 429, 708
StyI CCWWGG 2 cut(s) 255, 385
TaiI ACGT 1 cut(s) 962
TaqII GACCGA 1 cut(s) 797
TasI AATT 2 cut(s) 104, 900
TatI WGTACW 1 cut(s) 931
TauI GCSGC 1 cut(s) 1037
TfiI GAWTC 2 cut(s) 613, 1099
Tru1I TTAA 2 cut(s) 837, 903
Tru9I TTAA 2 cut(s) 837, 903
TscAI CASTG 3 cut(s) 174, 406, 469
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 8 cut(s) 323, 452, 455, 647, 923, 1025, 1028, 1031
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 762, 909
TspRI CASTG 3 cut(s) 174, 406, 469
Van91I CCANNNNNTGG 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 424
XceI RCATGY 2 cut(s) 473, 1078
XcmI CCANNNNNNNNNTGG 2 cut(s) 326, 514
XspI CTAG 4 cut(s) 143, 444, 848, 1071
ZrmI AGTACT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.