Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010501

Physical Location & Seq

Genomic Coordinates Forward (+)

24006261 .. 24010671

Gene Structure 4411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG203900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGAGCAATAGCGTTTTCACCCTCCCAACAATGGGACTCCAAAATCCAAACCCGTCTCCCAAATTCCTCACACAAACCAATCAACACCAACCCAAATCTCCAATTCAAAACCACAAGACACCCACTTCCCTGTTTCTCCCTAGACTCATCAAAATCCCAAACCCCACTGACCCCAATCACCCCCACAACCCCACCCCTCGTGGTGGTGGGCTCAGCCAATGCAGACATCTATGTTGAGATTGATAGACTCCCCAAGGAGGGTGAGACCATCTCAGCCAAAACCGGTCAGACCCTGGCTGGTGGCAAAGGAGCCAACCAGGCTGCCTGTGGTGGCAAGCTGGCTTACCCAACCTACTTTGTGGGCCAGGTGGGTCAGGATGCCCATGGCAAACTGGTCACTGAGGCCCTCAGGGGTGGTGGGGTCCACCTGGATCACCTGACTAGTGTGGCTGCTGCACCCACTGGTCATGCTGTGGTGATGTTGCAGAGTGATGGGCAGAACTCCATCATCATTGTGGGTGGTGCCAACATGAGGTTTTGGCCTGAGAGGCTGAGTGATGAGGATTTGAGGGTTGTGAGGAGTGCTGGGATTGTTTTGCTTCAGAGGGAGATTCCAGAAGTGGTCAACATTCAGGTTGCAAAGGCTGCCAAGAGTGCAGGTGTACCAGTCATTTTGGATGCCGGAGGAATGGATACACCAATCTCCCAGGAGTTATTGAACTATGTTGATATTTTTAGCCCAAATGAAAGTGAGCTTGGTCGTTTGACAGGAATGCCGACCGAAAGCTTTGAACAGATTAGTAATGCCGTTGTCAAATGCCATAAAATGGGTGTTAAGCAAGTCCTAGTAAAACTTGGGGACAAAGGGTCTGCTCTATTTGTAGAAGGTGATGAACCAATTAAACAACCTGTCATATCTGCTGCGAAAGTACTTGATACTACTGGAGCCGGTGATACGTTTACTGCCTCTTTTGCTGTTGCTTTTGTGGAGGGCAAGTCCATAAAGGAATGCCTGAGATTTGCAGGTGAGGGTGGCTGCAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

349

Amino Acids

36.89

Weight (kDa)

6.4

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	67 - 342	1.7e-56	pfkB family carbohydrate kinase
Phos_pyr_kin	PF08543	235 - 342	5.9e-10	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17160 AT1G17160
fragaria_vesca	FvH4_3g17420 FvH4_3g17420 FvH4_3g17420
malus_domestica	MD11G1273100.v1.1
prunus_persica	Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1 Prupe.4G154400_v2.0.a1
pyrus_communis	pycom11g24100
rosa_chinensis	RchiOBHm_Chr5g0028951
rosa_laevigata	RLG00000033130
rosa_multiflora	Rmu_sc0039366.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050940
rosa_rugosa	Rorug05G0111700
rosa_samantha	Rh5AG203900 Rh5BG202200 Rh5CG223000 Rh5DG206000
rosa_wichuraiana	Rw5G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1048
AarI	CACCTGC	2 cut(s)	650, 1016
Acc36I	ACCTGC	2 cut(s)	650, 1016
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	829
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	666, 933
AfiI	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 829
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	109, 721, 794
AhdI	GACNNNNNGTC	1 cut(s)	868
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	5 cut(s)	294, 318, 366, 429, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
AluBI	AGCT	3 cut(s)	340, 757, 789
AluI	AGCT	3 cut(s)	340, 757, 789
Alw26I	GTCTC	2 cut(s)	62, 260
AlwI	GGATC	1 cut(s)	441
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	3 cut(s)	364, 405, 542
ApeKI	GCWGC	6 cut(s)	323, 452, 455, 647, 923, 1038
ApoI	RAATTY	1 cut(s)	64
AsiGI	ACCGGT	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	364, 406, 424
AsuHPI	GGTGA	8 cut(s)	12, 172, 275, 428, 490, 902, 965, 1040
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	200
BbvI	GCAGC	6 cut(s)	310, 439, 442, 634, 910, 1025
BccI	CCATC	3 cut(s)	278, 488, 515
BceAI	ACGGC	1 cut(s)	794
BciT130I	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BciVI	GTATCC	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	62, 260
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	3 cut(s)	143, 444, 848
BfuAI	ACCTGC	2 cut(s)	650, 1016
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	2 cut(s)	320, 550
BisI	GCNGC	6 cut(s)	324, 453, 456, 648, 924, 1039
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	6 cut(s)	325, 454, 457, 649, 925, 1040
BmcAI	AGTACT	1 cut(s)	933
Bme1390I	CCNGG	5 cut(s)	296, 320, 368, 431, 710
Bme18I	GGWCC	1 cut(s)	424
BmeRI	GACNNNNNGTC	1 cut(s)	868
BmgT120I	GGNCC	3 cut(s)	364, 406, 424
BmiI	GGNNCC	4 cut(s)	313, 425, 526, 949
BmrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 710
BmsI	GCATC	2 cut(s)	370, 670
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	1 cut(s)	966
Bpu1102I	GCTNAGC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	255, 294, 385, 708
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	983, 1013
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 829
Bse118I	RCCGGY	2 cut(s)	284, 950
Bse1I	ACTGG	4 cut(s)	399, 469, 668, 949
Bse21I	CCTNAGG	1 cut(s)	410
BseBI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BseDI	CCNNGG	4 cut(s)	255, 294, 385, 708
BseGI	GGATG	2 cut(s)	385, 685
BseLI	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 829
BseMII	CTCAG	7 cut(s)	228, 288, 393, 424, 537, 545, 1007
BseNI	ACTGG	4 cut(s)	399, 469, 668, 949
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	6 cut(s)	310, 439, 442, 634, 910, 1025
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	2 cut(s)	441, 678
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	3 cut(s)	366, 407, 544
BshNI	GGYRCC	1 cut(s)	524
BshTI	ACCGGT	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	783
BsiSI	CCGG	3 cut(s)	285, 684, 951
BslFI	GGGAC	2 cut(s)	50, 875
BslI	CCNNNNNNNGG	7 cut(s)	33, 34, 205, 259, 260, 534, 829
BsmAI	GTCTC	2 cut(s)	62, 260
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	50, 875
BsmI	GAATGC	2 cut(s)	780, 1016
BsnI	GGCC	3 cut(s)	366, 407, 544
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	385
BspANI	GGCC	3 cut(s)	366, 407, 544
BspCNI	CTCAG	7 cut(s)	227, 287, 394, 423, 538, 546, 1008
BspLI	GGNNCC	4 cut(s)	313, 425, 526, 949
BspMI	ACCTGC	2 cut(s)	650, 1016
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	2 cut(s)	284, 950
BsrI	ACTGG	4 cut(s)	399, 469, 668, 949
BssAI	RCCGGY	2 cut(s)	284, 950
BssECI	CCNNGG	4 cut(s)	255, 294, 385, 708
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	255, 385
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	338, 342
BstDEI	CTNAG	7 cut(s)	214, 274, 402, 410, 546, 554, 1016
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	385, 685
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	2 cut(s)	62, 260
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 550, 647, 656, 974
BstNI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
BstSCI	CCNGG	5 cut(s)	294, 318, 366, 429, 708
BstV1I	GCAGC	6 cut(s)	310, 439, 442, 634, 910, 1025
Bsu36I	CCTNAGG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	366, 407, 544
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	385, 685
BtsIMutI	CAGTG	3 cut(s)	167, 399, 462
BveI	ACCTGC	2 cut(s)	650, 1016
Cac8I	GCNNGC	2 cut(s)	338, 342
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	284, 950
Cfr13I	GGNCC	3 cut(s)	364, 406, 424
Csp6I	GTAC	2 cut(s)	665, 932
CspAI	ACCGGT	1 cut(s)	284
CviAII	CATG	3 cut(s)	386, 470, 532
CviQI	GTAC	2 cut(s)	665, 932
DdeI	CTNAG	7 cut(s)	214, 274, 402, 410, 546, 554, 1016
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DriI	GACNNNNNGTC	1 cut(s)	868
Eam1105I	GACNNNNNGTC	1 cut(s)	868
Eco130I	CCWWGG	2 cut(s)	255, 385
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	587
Eco81I	CCTNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	5 cut(s)	294, 318, 366, 429, 708
EcoT14I	CCWWGG	2 cut(s)	255, 385
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	255, 385
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	3 cut(s)	389, 473, 535
FaiI	YATR	9 cut(s)	234, 387, 471, 533, 726, 825, 917, 1004, 1048
FaqI	GGGAC	2 cut(s)	50, 875
FatI	CATG	3 cut(s)	385, 469, 531
Fnu4HI	GCNGC	6 cut(s)	324, 453, 456, 648, 924, 1039
FokI	GGATG	2 cut(s)	392, 692
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	6 cut(s)	324, 453, 456, 648, 924, 1039
FspBI	CTAG	3 cut(s)	143, 444, 848
GluI	GCNGC	6 cut(s)	324, 453, 456, 648, 924, 1039
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	3 cut(s)	366, 407, 544
HapII	CCGG	3 cut(s)	285, 684, 951
Hin1II	CATG	3 cut(s)	389, 473, 535
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	4 cut(s)	38, 146, 249, 613
HpaII	CCGG	3 cut(s)	285, 684, 951
HphI	GGTGA	8 cut(s)	12, 172, 275, 428, 490, 902, 965, 1040
Hpy166II	GTNNAC	4 cut(s)	427, 628, 665, 963
Hpy188I	TCNGA	2 cut(s)	291, 606
Hpy188III	TCNNGA	2 cut(s)	377, 617
Hpy8I	GTNNAC	4 cut(s)	427, 628, 665, 963
HpyAV	CCTTC	1 cut(s)	881
HpyCH4IV	ACGT	1 cut(s)	959
HpyCH4V	TGCA	7 cut(s)	224, 458, 487, 641, 659, 1025, 1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 550, 647, 656, 974
HpyF3I	CTNAG	7 cut(s)	214, 274, 402, 410, 546, 554, 1016
HpySE526I	ACGT	1 cut(s)	959
Hsp92II	CATG	3 cut(s)	389, 473, 535
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	311, 947
Lsp1109I	GCAGC	6 cut(s)	310, 439, 442, 634, 910, 1025
LweI	GCATC	2 cut(s)	370, 670
MaeI	CTAG	3 cut(s)	143, 444, 848
MaeII	ACGT	1 cut(s)	959
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	64, 104, 900
MlyI	GAGTC	3 cut(s)	32, 140, 243
MseI	TTAA	2 cut(s)	837, 903
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	3 cut(s)	285, 684, 951
MspR9I	CCNGG	5 cut(s)	296, 320, 368, 431, 710
Mva1269I	GAATGC	2 cut(s)	780, 1016
MvaI	CCWGG	5 cut(s)	296, 320, 368, 431, 710
MwoI	GCNNNNNNNGC	5 cut(s)	320, 550, 647, 656, 974
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	3 cut(s)	389, 473, 535
NlaIV	GGNNCC	4 cut(s)	313, 425, 526, 949
NmuCI	GTSAC	1 cut(s)	397
PaqCI	CACCTGC	2 cut(s)	650, 1016
PctI	GAATGC	2 cut(s)	780, 1016
PfeI	GAWTC	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	829
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	6 cut(s)	325, 454, 457, 649, 925, 1040
PleI	GAGTC	3 cut(s)	32, 140, 243
PpsI	GAGTC	3 cut(s)	32, 140, 243
PsiI	TTATAA	1 cut(s)	1048
Psp6I	CCWGG	5 cut(s)	294, 318, 366, 429, 708
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	5 cut(s)	294, 318, 366, 429, 708
PspN4I	GGNNCC	4 cut(s)	313, 425, 526, 949
PspPI	GGNCC	3 cut(s)	364, 406, 424
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	2 cut(s)	666, 933
RsaNI	GTAC	2 cut(s)	665, 932
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	837, 903
SatI	GCNGC	6 cut(s)	324, 453, 456, 648, 924, 1039
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	364, 406, 424
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	3 cut(s)	32, 140, 243
ScrFI	CCNGG	5 cut(s)	296, 320, 368, 431, 710
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	2 cut(s)	370, 670
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	3 cut(s)	64, 104, 900
SspMI	CTAG	3 cut(s)	143, 444, 848
StyD4I	CCNGG	5 cut(s)	294, 318, 366, 429, 708
StyI	CCWWGG	2 cut(s)	255, 385
TaiI	ACGT	1 cut(s)	962
TaqII	GACCGA	1 cut(s)	797
TasI	AATT	3 cut(s)	64, 104, 900
TatI	WGTACW	1 cut(s)	931
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	837, 903
Tru9I	TTAA	2 cut(s)	837, 903
TscAI	CASTG	3 cut(s)	174, 406, 469
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	6 cut(s)	323, 452, 455, 647, 923, 1038
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	762, 909
TspRI	CASTG	3 cut(s)	174, 406, 469
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 514
XspI	CTAG	3 cut(s)	143, 444, 848
ZrmI	AGTACT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.