AT1G17330

Metal dependent phosphohydrolases with conserved 'HD' motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013001
Physical Location & Seq
Forward (+)
5929826 .. 5931926
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17330.1

Sequence Viewer

Length: 669 bp
ATGGCGGCGAAGACGATGAGGAAGGCGGAGGAGCTGGTGGAGAAGGCGATGAAAGGAAACGATGCTTCTCATGACGCCTGGCACGTGTGGAGGGTCCGAGACCTTGCTCTCTCCATTGCTCGCGAGGAAGGTCTCTCTTCCAATTCTGACTCCATGGAAATTGTGGAGCTTGCAGCTCTTCTCCATGATATAGGTGATTACAAGTACATAAGAGACCCTTCGGAAGAGAAACTTGTTGAGAATTTCCTAGATGATGAGGGTATAGAAGAGACCAAGAAGACGAAGATACTAACGATCATCAATGGAATGGGTTTTAAAGACGAATTAGCAGGAGTAGCACTCTGTGAGTCTCTTCCAGAATTTGGGGTAGTTCAAGATGCTGATCGCCTTGATGCAATTGGCGCCATAGGAATTGCTCGTTGCTTTACATTTGGTGGAAGCAGGAACAGAGTGCTTCATGATCCTGAGATCAAGCCCCGGACAGAGCTAACCAAAGAGCAGTACATTAAGAGAGAGGAGCAAACTACTATTAATCACTTTCATGAGAAACTCCTCAAGCTAAAGAAGCTGATGAAAACTGAGGCGGGTAAAAGGAGGGCAGAGAAAAGGCACAAGTTCATGGAAGAGTATCTTAAGGAGTTCTATGAAGAGTGGGATGGGTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD

Protein Analysis

222

Amino Acids

25.5

Weight (kDa)

5.51

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 28 - 132 2.1e-08 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17330
fragaria_vesca FvH4_4g36970 FvH4_4g36970 FvH4_4g36970
malus_domestica MD13G1004800.v1.1
prunus_persica Prupe.1G347900_v2.0.a1
pyrus_communis pycom13g00420
rosa_chinensis RchiOBHm_Chr4g0446761
rosa_laevigata RLG00000005634
rosa_multiflora Rmu_sc0001753.1_g000032
rosa_roxburghii Rroxscaffold_5G00387080
rosa_rugosa Rorug04G0374400 Rorug04G0374400
rosa_samantha Rh4AG435800 Rh4BG444700 Rh4CG461900 Rh4DG443600
rosa_wichuraiana Rw4G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 362
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 5, 26, 584
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 2 cut(s) 241, 359
AcvI CACGTG 1 cut(s) 85
AcyI GRCGYC 2 cut(s) 75, 402
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 2 cut(s) 206, 503
AfiI CCNNNNNNNGG 1 cut(s) 362
AflII CTTAAG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 6 cut(s) 34, 169, 176, 487, 559, 568
AluI AGCT 6 cut(s) 34, 169, 176, 487, 559, 568
Alw26I GTCTC 5 cut(s) 93, 137, 207, 263, 354
AlwI GGATC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 241, 359
AseI ATTAAT 1 cut(s) 531
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 401
BbrPI CACGTG 1 cut(s) 85
BbsI GAAGAC 2 cut(s) 17, 284
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 650
BciT130I CCWGG 1 cut(s) 79
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 5 cut(s) 93, 137, 207, 263, 354
BfaI CTAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 405
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 2 cut(s) 6, 174
BlsI GCNGC 2 cut(s) 7, 175
Bme1390I CCNGG 2 cut(s) 79, 478
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 95, 403
BmrFI CCNGG 2 cut(s) 79, 478
BmsI GCATC 3 cut(s) 52, 367, 382
BpiI GAAGAC 2 cut(s) 17, 284
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 2 cut(s) 75, 402
BsaI GGTCTC 4 cut(s) 93, 137, 207, 263
BsaJI CCNNGG 2 cut(s) 153, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 153, 476
BseGI GGATG 1 cut(s) 661
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 456, 570
BseRI GAGGAG 3 cut(s) 44, 530, 542
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 401
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 5 cut(s) 93, 137, 207, 263, 354
Bso31I GGTCTC 4 cut(s) 93, 137, 207, 263
Bsp143I GATC 4 cut(s) 294, 382, 460, 468
Bsp19I CCATGG 1 cut(s) 153
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 3 cut(s) 5, 26, 584
BspCNI CTCAG 2 cut(s) 457, 571
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 3 cut(s) 70, 457, 541
BspLI GGNNCC 2 cut(s) 95, 403
BspPI GGATC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 4 cut(s) 93, 137, 207, 263
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 153, 476
BssMI GATC 4 cut(s) 294, 382, 460, 468
BssNI GRCGYC 2 cut(s) 75, 402
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 79
Bst6I CTCTTC 7 cut(s) 142, 183, 219, 261, 357, 618, 642
BstACI GRCGYC 2 cut(s) 75, 402
BstAFI CTTAAG 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 121, 171
BstDEI CTNAG 2 cut(s) 465, 579
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 661
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 4 cut(s) 297, 385, 463, 471
BstMAI GTCTC 5 cut(s) 93, 137, 207, 263, 354
BstMBI GATC 4 cut(s) 294, 382, 460, 468
BstMWI GCNNNNNNNGC 3 cut(s) 335, 401, 565
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 77, 476
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 2 cut(s) 17, 284
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 661
BtuMI TCGCGA 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 121, 171
CciI TCATGA 3 cut(s) 70, 457, 541
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 205, 502
CviAII CATG 6 cut(s) 71, 154, 185, 458, 542, 619
CviJI RGCY 7 cut(s) 34, 169, 176, 475, 487, 559, 568
CviKI_1 RGCY 7 cut(s) 34, 169, 176, 475, 487, 559, 568
CviQI GTAC 2 cut(s) 205, 502
DdeI CTNAG 2 cut(s) 465, 579
DinI GGCGCC 1 cut(s) 403
DpnI GATC 4 cut(s) 296, 384, 462, 470
DpnII GATC 4 cut(s) 294, 382, 460, 468
DraI TTTAAA 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 7 cut(s) 142, 183, 219, 261, 357, 618, 642
EarI CTCTTC 7 cut(s) 142, 183, 219, 261, 357, 618, 642
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 153
Eco31I GGTCTC 4 cut(s) 93, 137, 207, 263
Eco47I GGWCC 1 cut(s) 94
Eco72I CACGTG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 6 cut(s) 74, 157, 188, 461, 545, 622
FalI AAGNNNNNCTT 6 cut(s) 202, 234, 216, 248, 615, 647
FatI CATG 6 cut(s) 70, 153, 184, 457, 541, 618
FauI CCCGC 1 cut(s) 577
Fnu4HI GCNGC 2 cut(s) 6, 174
Fsp4HI GCNGC 2 cut(s) 6, 174
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 403
GluI GCNGC 2 cut(s) 6, 174
HaeII RGCGCY 1 cut(s) 405
HapII CCGG 1 cut(s) 478
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 2 cut(s) 75, 402
Hin1II CATG 6 cut(s) 74, 157, 188, 461, 545, 622
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 2 cut(s) 149, 347
HpaII CCGG 1 cut(s) 478
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 3 cut(s) 98, 148, 223
Hpy188III TCNNGA 7 cut(s) 71, 122, 356, 374, 458, 464, 542
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 4 cut(s) 16, 37, 122, 228
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 173, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 401, 565
HpyF3I CTNAG 2 cut(s) 465, 579
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 2 cut(s) 75, 402
Hsp92II CATG 6 cut(s) 74, 157, 188, 461, 545, 622
HspAI GCGC 1 cut(s) 402
KasI GGCGCC 1 cut(s) 401
Kzo9I GATC 4 cut(s) 294, 382, 460, 468
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 3 cut(s) 31, 166, 517
LpnPI CCDG 8 cut(s) 20, 64, 91, 315, 369, 427, 477, 491
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 3 cut(s) 52, 367, 382
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 84
MalI GATC 4 cut(s) 296, 384, 462, 470
MboI GATC 4 cut(s) 294, 382, 460, 468
MfeI CAATTG 1 cut(s) 396
MluCI AATT 7 cut(s) 142, 159, 241, 323, 359, 396, 411
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 143, 356
MnlI CCTC 9 cut(s) 12, 22, 84, 118, 250, 508, 563, 574, 588
MseI TTAA 4 cut(s) 315, 507, 531, 633
MslI CAYNNNNRTG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 79, 478
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 335, 401, 565
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 1 cut(s) 478
NcoI CCATGG 1 cut(s) 153
NdeII GATC 4 cut(s) 294, 382, 460, 468
NlaIII CATG 6 cut(s) 74, 157, 188, 461, 545, 622
NlaIV GGNNCC 2 cut(s) 95, 403
NruI TCGCGA 1 cut(s) 123
PagI TCATGA 3 cut(s) 70, 457, 541
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 2 cut(s) 7, 175
PleI GAGTC 2 cut(s) 143, 355
PluTI GGCGCC 1 cut(s) 405
PmaCI CACGTG 1 cut(s) 85
PmlI CACGTG 1 cut(s) 85
PpsI GAGTC 2 cut(s) 143, 355
Ppu21I YACGTR 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 77
PspCI CACGTG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 95, 403
PspPI GGNCC 1 cut(s) 94
RruI TCGCGA 1 cut(s) 123
RsaI GTAC 2 cut(s) 206, 503
RsaNI GTAC 2 cut(s) 205, 502
RseI CAYNNNNRTG 1 cut(s) 540
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 4 cut(s) 315, 507, 531, 633
SatI GCNGC 2 cut(s) 6, 174
Sau3AI GATC 4 cut(s) 294, 382, 460, 468
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 2 cut(s) 143, 356
ScrFI CCNGG 2 cut(s) 79, 478
SfaNI GCATC 3 cut(s) 52, 367, 382
SfoI GGCGCC 1 cut(s) 403
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 554, 632
SmoI CTYRAG 2 cut(s) 554, 632
Sse9I AATT 7 cut(s) 142, 159, 241, 323, 359, 396, 411
SsiI CCGC 3 cut(s) 5, 26, 584
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 77, 476
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 87
TasI AATT 7 cut(s) 142, 159, 241, 323, 359, 396, 411
TatI WGTACW 2 cut(s) 204, 501
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 315, 507, 531, 633
Tru9I TTAA 4 cut(s) 315, 507, 531, 633
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 6 cut(s) 65, 446, 530, 587, 607, 660
Van91I CCANNNNNTGG 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 94
VspI ATTAAT 1 cut(s) 531
XapI RAATTY 2 cut(s) 241, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.