RchiOBHm_Chr4g0446761

Metal dependent phosphohydrolases with conserved 'HD' motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013001
Physical Location & Seq
Forward (+)
66812949 .. 66815644
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41425

Sequence Viewer

Length: 726 bp
ATGAGTCAAACGGCGGCTGGAGCTCGATCCAGAGAATCAGAGATGGCGAGCTGGAATTGGGAAGAGACGGTGAGAAAGGCGGAGGAGTTGGTCGTAAAATCCATGAAAGGCAATGACGCATCACACGACCCAGCCCACGTCTGGAGGGTCAGAGACCTCGCACTCTCTCTTGCTCGCGAAGAACAAGCCCTCTCCTCCAACTCCGACTCCATGCAAATAGTAGAACTTGCTGCACTCCTCCATGATATAGGTGATTATAAGTACTTGAGAGATCCTTCGGAGGACAAACTTGTTGAGCACTTTCTTATTGACTCGGGCATAGAGGAGAGCAAGAAAACAAAGATTATAAAGATCATCAATGGAATGGGGTTTAAAGATGAGCTGGCTGGGCTGACAAATGGTGATCTTCCTCTAGAATTTGGGGTTGTACAAGATGCTGATCGGCTTGATGCAATTGGTGCTATAGGAATTGCTCGTTGCTTTACTTTTGGAGGAAGTAGGAACAGAGTGCTACATGATCCTAACATTCAGCCACGATCTGATTTATCCAAGGAAAAGTACATGAAAAAAGAGGAGCAAACTACCGTTAATCATTTTCATGAGAAGCTTCTCAAGCTAAAGGATCTGATGAAAACAAAGGCTGGACGGAAGAGAGCTGAGAAAAGGCACAAGTTCATGGAGGAGTTTCTTGTAGAGTTCTATGAAGAGTGGGATGGGAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD

Protein Analysis

241

Amino Acids

27.49

Weight (kDa)

5.96

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 46 - 151 2.5e-08 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17330
fragaria_vesca FvH4_4g36970 FvH4_4g36970 FvH4_4g36970
malus_domestica MD13G1004800.v1.1
prunus_persica Prupe.1G347900_v2.0.a1
pyrus_communis pycom13g00420
rosa_chinensis RchiOBHm_Chr4g0446761
rosa_laevigata RLG00000005634
rosa_multiflora Rmu_sc0001753.1_g000032
rosa_roxburghii Rroxscaffold_5G00387080
rosa_rugosa Rorug04G0374400 Rorug04G0374400
rosa_samantha Rh4AG435800 Rh4BG444700 Rh4CG461900 Rh4DG443600
rosa_wichuraiana Rw4G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 258, 347
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 14, 80
AclWI GGATC 4 cut(s) 21, 266, 512, 630
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 3 cut(s) 263, 429, 560
AfiI CCNNNNNNNGG 1 cut(s) 141
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 7 cut(s) 23, 51, 382, 607, 616, 656, 722
AluI AGCT 7 cut(s) 23, 51, 382, 607, 616, 656, 722
Alw21I GWGCWC 2 cut(s) 25, 300
Alw26I GTCTC 2 cut(s) 59, 147
AlwI GGATC 4 cut(s) 21, 266, 512, 630
Ama87I CYCGRG 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 82, 263, 413
AvaI CYCGRG 1 cut(s) 313
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 25, 300
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 37, 707
BceAI ACGGC 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 59, 147
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 2 cut(s) 15, 231
BlsI GCNGC 2 cut(s) 16, 232
BmcAI AGTACT 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 139
BmsI GCATC 3 cut(s) 128, 424, 439
BpmI CTGGAG 2 cut(s) 39, 163
BpuEI CTTGAG 2 cut(s) 286, 596
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 549
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 1 cut(s) 718
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 648
BseRI GAGGAG 6 cut(s) 98, 184, 227, 338, 587, 695
BseXI GCAGC 1 cut(s) 217
BseYI CCCAGC 2 cut(s) 130, 386
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 25, 300
BsiHKCI CYCGRG 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 59, 147
BsmBI CGTCTC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 25, 300
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 2 cut(s) 14, 80
BspCNI CTCAG 1 cut(s) 649
BspFNI CGCG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 598
BspPI GGATC 4 cut(s) 21, 266, 512, 630
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
BssT1I CCWWGG 1 cut(s) 549
Bst4CI ACNGT 2 cut(s) 70, 586
Bst6I CTCTTC 3 cut(s) 57, 644, 699
BstAPI GCANNNNNTGC 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 49, 175, 384
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 8 cut(s) 29, 274, 354, 406, 442, 520, 539, 625
BstMAI GTCTC 2 cut(s) 59, 147
BstMBI GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
BstMWI GCNNNNNNNGC 4 cut(s) 20, 388, 458, 613
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 2 cut(s) 271, 622
BstYI RGATCY 2 cut(s) 271, 622
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 718
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 49, 175, 384
CciI TCATGA 1 cut(s) 598
CseI GACGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 262, 428, 559
CviAII CATG 7 cut(s) 103, 211, 242, 515, 562, 599, 676
CviQI GTAC 3 cut(s) 262, 428, 559
DdeI CTNAG 1 cut(s) 657
DpnI GATC 8 cut(s) 28, 273, 353, 405, 441, 519, 538, 624
DpnII GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
DraI TTTAAA 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 57, 644, 699
EarI CTCTTC 3 cut(s) 57, 644, 699
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 7 cut(s) 106, 214, 245, 518, 565, 602, 679
FatI CATG 7 cut(s) 102, 210, 241, 514, 561, 598, 675
Fnu4HI GCNGC 2 cut(s) 15, 231
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 15, 231
FspBI CTAG 1 cut(s) 413
GluI GCNGC 2 cut(s) 15, 231
GsaI CCCAGC 2 cut(s) 134, 390
GsuI CTGGAG 2 cut(s) 39, 163
HgaI GACGC 1 cut(s) 125
Hin1II CATG 7 cut(s) 106, 214, 245, 518, 565, 602, 679
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 4 cut(s) 4, 35, 206, 311
HphI GGTGA 3 cut(s) 82, 263, 413
Hpy188I TCNGA 6 cut(s) 40, 152, 205, 280, 541, 627
Hpy188III TCNNGA 5 cut(s) 30, 142, 176, 413, 599
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 2 cut(s) 70, 586
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 214, 233, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 388, 458, 613
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 7 cut(s) 106, 214, 245, 518, 565, 602, 679
Kzo9I GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
LmnI GCTCC 2 cut(s) 20, 574
LpnPI CCDG 8 cut(s) 3, 37, 43, 127, 144, 368, 372, 627
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 3 cut(s) 128, 424, 439
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 138
MalI GATC 8 cut(s) 28, 273, 353, 405, 441, 519, 538, 624
MboI GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
MboII GAAGA 5 cut(s) 74, 191, 398, 661, 716
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 271, 622
MhlI GDGCHC 2 cut(s) 25, 300
MluCI AATT 4 cut(s) 55, 416, 453, 468
MlyI GAGTC 3 cut(s) 13, 200, 305
MmeI TCCRAC 2 cut(s) 222, 228
MseI TTAA 2 cut(s) 372, 588
MslI CAYNNNNRTG 1 cut(s) 597
MunI CAATTG 1 cut(s) 453
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 20, 388, 458, 613
NdeII GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
NlaIII CATG 7 cut(s) 106, 214, 245, 518, 565, 602, 679
NruI TCGCGA 1 cut(s) 177
PagI TCATGA 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 16, 232
PleI GAGTC 3 cut(s) 12, 200, 305
PpsI GAGTC 3 cut(s) 12, 200, 305
PsiI TTATAA 2 cut(s) 258, 347
Psp124BI GAGCTC 1 cut(s) 25
PspFI CCCAGC 2 cut(s) 130, 386
PsuI RGATCY 2 cut(s) 271, 622
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 3 cut(s) 263, 429, 560
RsaNI GTAC 3 cut(s) 262, 428, 559
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 372, 588
SatI GCNGC 2 cut(s) 15, 231
Sau3AI GATC 8 cut(s) 26, 271, 351, 403, 439, 517, 536, 622
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 3 cut(s) 13, 200, 305
SduI GDGCHC 2 cut(s) 25, 300
SfaNI GCATC 3 cut(s) 128, 424, 439
SfcI CTRYAG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 265, 611
SmoI CTYRAG 2 cut(s) 265, 611
Sse9I AATT 4 cut(s) 55, 416, 453, 468
SsiI CCGC 2 cut(s) 14, 80
SspMI CTAG 1 cut(s) 413
SstI GAGCTC 1 cut(s) 25
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 2 cut(s) 70, 586
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 25
TasI AATT 4 cut(s) 55, 416, 453, 468
TatI WGTACW 3 cut(s) 261, 427, 558
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 372, 588
Tru9I TTAA 2 cut(s) 372, 588
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 6 cut(s) 119, 578, 587, 644, 664, 717
TspGWI ACGGA 1 cut(s) 661
XapI RAATTY 1 cut(s) 416
XbaI TCTAGA 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
XspI CTAG 1 cut(s) 413
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.