Prupe.1G347900_v2.0.a1

Metal dependent phosphohydrolases with conserved 'HD' motif.

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
32512268 .. 32515516
3249 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G347900.1

Sequence Viewer

Length: 696 bp
ATGGGGTCAGTGGGATCATGGGAAGAGACGGTGAGAAAGGCAGAGAAGCTGGTAGAGGAAGCCATGAAAGACAATGATGCATCCCGCGACGCAGCTCACGTCTGGAGGGTCAGAGACCTCGCTCTCTCTCTTGCCCGTGAAGAACAAGGCCTCTCCCTCCTCTCCTCCAATTCCAACACCATGCAAATTGTCGAACTTGCTGCACTTCTCCATGATATAGGTGATTATAAGTATTTGAGAGATCCCTCAGAGGAAAAAATTGTCGAAAACTTTCTTGACGAGGAGGGCATAGAAGAGAGTACCAAAATGAAGATTTTAAAGATCATTAAGGGAATGGGTTTCAAAGATGAGCTTGCAGGGTCAGCAAATAATGATCTTCCTCCAGAATTTGGGGTTGTACAAGATGCTGACCGTCTCGATGCAATTGGTGCTATTGGAATTGCTCGTTGCTTTACTTTTGGTGGAAGTAGAAACAGAGTGCTACATGATCCTAACATTCAGCCACAATCTGATTTATCTAAGGAAAAGTACGTGAAAAATGATGAGCAGACTACTGTGAATCACTTTCATGAGAAGCTTCTTAAGCTAAAGGCATTGATGAAAACAAAGGCTGGGCGAAAGAGAGCTGAGAGAAGGCACAAGTACATGGAGGATTTTCTTGCGGAGTTCTATGAAGAGTGGGATGGGGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

232

Amino Acids

26.16

Weight (kDa)

5.3

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17330
fragaria_vesca FvH4_4g36970 FvH4_4g36970 FvH4_4g36970
malus_domestica MD13G1004800.v1.1
prunus_persica Prupe.1G347900_v2.0.a1
pyrus_communis pycom13g00420
rosa_chinensis RchiOBHm_Chr4g0446761
rosa_laevigata RLG00000005634
rosa_multiflora Rmu_sc0001753.1_g000032
rosa_roxburghii Rroxscaffold_5G00387080
rosa_rugosa Rorug04G0374400 Rorug04G0374400
rosa_samantha Rh4AG435800 Rh4BG444700 Rh4CG461900 Rh4DG443600
rosa_wichuraiana Rw4G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 87
AciI CCGC 2 cut(s) 85, 662
AclWI GGATC 3 cut(s) 22, 236, 482
AcsI RAATTY 1 cut(s) 386
AfaI GTAC 4 cut(s) 301, 399, 530, 644
AfiI CCNNNNNNNGG 1 cut(s) 389
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 1 cut(s) 343
AjiI CACGTC 1 cut(s) 100
AluBI AGCT 7 cut(s) 49, 95, 352, 577, 586, 626, 692
AluI AGCT 7 cut(s) 49, 95, 352, 577, 586, 626, 692
Alw26I GTCTC 3 cut(s) 20, 108, 419
AlwI GGATC 3 cut(s) 22, 236, 482
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 92, 200
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 43, 233
BbvI GCAGC 2 cut(s) 104, 187
BccI CCATC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcoDI GTCTC 3 cut(s) 20, 108, 419
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 2 cut(s) 93, 201
BlsI GCNGC 2 cut(s) 94, 202
BmgBI CACGTC 1 cut(s) 100
BmsI GCATC 4 cut(s) 67, 89, 394, 409
BpmI CTGGAG 2 cut(s) 124, 366
BsaAI YACGTR 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 389
BseGI GGATG 2 cut(s) 80, 688
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 261, 618
BseRI GAGGAG 3 cut(s) 149, 154, 296
BseXI GCAGC 2 cut(s) 104, 187
BseYI CCCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 3 cut(s) 20, 108, 419
BsmBI CGTCTC 2 cut(s) 20, 419
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 5 cut(s) 14, 241, 321, 373, 487
BspACI CCGC 2 cut(s) 85, 662
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 260, 619
BspFNI CGCG 1 cut(s) 87
BspHI TCATGA 1 cut(s) 568
BspPI GGATC 3 cut(s) 22, 236, 482
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 397
BssMI GATC 5 cut(s) 14, 241, 321, 373, 487
Bst4CI ACNGT 3 cut(s) 31, 413, 556
Bst6I CTCTTC 3 cut(s) 18, 288, 669
BstAFI CTTAAG 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 397
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 247, 519, 627
BstF5I GGATG 2 cut(s) 80, 688
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 5 cut(s) 17, 244, 324, 376, 490
BstMAI GTCTC 3 cut(s) 20, 108, 419
BstMBI GATC 5 cut(s) 14, 241, 321, 373, 487
BstMWI GCNNNNNNNGC 3 cut(s) 362, 428, 583
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 104, 187
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 150
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 80, 688
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 568
CseI GACGC 1 cut(s) 98
Csp6I GTAC 4 cut(s) 300, 398, 529, 643
CviAII CATG 7 cut(s) 18, 64, 181, 212, 485, 569, 646
CviQI GTAC 4 cut(s) 300, 398, 529, 643
DdeI CTNAG 3 cut(s) 247, 519, 627
DpnI GATC 5 cut(s) 16, 243, 323, 375, 489
DpnII GATC 5 cut(s) 14, 241, 321, 373, 487
DraI TTTAAA 1 cut(s) 318
Eam1104I CTCTTC 3 cut(s) 18, 288, 669
EarI CTCTTC 3 cut(s) 18, 288, 669
Eco147I AGGCCT 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 82
Esp3I CGTCTC 2 cut(s) 20, 419
FaeI CATG 7 cut(s) 21, 67, 184, 215, 488, 572, 649
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 7 cut(s) 17, 63, 180, 211, 484, 568, 645
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 93, 201
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 93, 201
GluI GCNGC 2 cut(s) 93, 201
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 2 cut(s) 124, 366
HaeIII GGCC 1 cut(s) 150
HgaI GACGC 1 cut(s) 98
Hin1II CATG 7 cut(s) 21, 67, 184, 215, 488, 572, 649
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 1 cut(s) 559
HphI GGTGA 2 cut(s) 43, 233
Hpy188I TCNGA 3 cut(s) 113, 250, 511
Hpy188III TCNNGA 5 cut(s) 103, 275, 383, 416, 569
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 627
HpyCH4III ACNGT 3 cut(s) 31, 413, 556
HpyCH4IV ACGT 2 cut(s) 99, 531
HpyCH4V TGCA 5 cut(s) 80, 184, 203, 356, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 428, 583
HpyF3I CTNAG 3 cut(s) 247, 519, 627
HpySE526I ACGT 2 cut(s) 99, 531
Hsp92II CATG 7 cut(s) 21, 67, 184, 215, 488, 572, 649
Kzo9I GATC 5 cut(s) 14, 241, 321, 373, 487
LmnI GCTCC 1 cut(s) 689
LpnPI CCDG 5 cut(s) 35, 88, 342, 396, 597
Lsp1109I GCAGC 2 cut(s) 104, 187
LweI GCATC 4 cut(s) 67, 89, 394, 409
MaeII ACGT 2 cut(s) 99, 531
MalI GATC 5 cut(s) 16, 243, 323, 375, 489
MboI GATC 5 cut(s) 14, 241, 321, 373, 487
MboII GAAGA 6 cut(s) 35, 152, 305, 322, 368, 686
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 241
MluCI AATT 6 cut(s) 169, 186, 258, 386, 423, 438
MmeI TCCRAC 1 cut(s) 198
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 3 cut(s) 317, 327, 582
MslI CAYNNNNRTG 1 cut(s) 567
MspCI CTTAAG 1 cut(s) 581
MunI CAATTG 1 cut(s) 423
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 362, 428, 583
NdeII GATC 5 cut(s) 14, 241, 321, 373, 487
NlaIII CATG 7 cut(s) 21, 67, 184, 215, 488, 572, 649
NsiI ATGCAT 1 cut(s) 82
PagI TCATGA 1 cut(s) 568
PceI AGGCCT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 559
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 2 cut(s) 94, 202
Ppu21I YACGTR 1 cut(s) 532
PsiI TTATAA 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 611
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 4 cut(s) 301, 399, 530, 644
RsaNI GTAC 4 cut(s) 300, 398, 529, 643
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 3 cut(s) 317, 327, 582
SatI GCNGC 2 cut(s) 93, 201
Sau3AI GATC 5 cut(s) 14, 241, 321, 373, 487
SfaNI GCATC 4 cut(s) 67, 89, 394, 409
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 6 cut(s) 169, 186, 258, 386, 423, 438
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 2 cut(s) 85, 662
StuI AGGCCT 1 cut(s) 150
TaaI ACNGT 3 cut(s) 31, 413, 556
TaiI ACGT 2 cut(s) 102, 534
TaqI TCGA 3 cut(s) 192, 264, 417
TasI AATT 6 cut(s) 169, 186, 258, 386, 423, 438
TatI WGTACW 2 cut(s) 397, 642
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 3 cut(s) 317, 327, 582
Tru9I TTAA 3 cut(s) 317, 327, 582
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 92, 200
TspDTI ATGAA 5 cut(s) 80, 323, 557, 614, 687
TspRI CASTG 1 cut(s) 15
Van91I CCANNNNNTGG 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 581
XapI RAATTY 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.