FvH4_4g36970

Metal dependent phosphohydrolases with conserved 'HD' motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013001
Physical Location & Seq
Forward (+)
33677059 .. 33679310
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36970.t3

Sequence Viewer

Length: 675 bp
ATGGATTGGGAAGAGACAGTGAGGAAGGCGGAGGAGTTGGTCGTGAAATCCATGAAAGGCAATGACGCATCACACGACCCATCCCACGTTTGGAGGGTCAGAGACCTCGCGCTCTCTCTTGCTCGCCAAGAACAAGTCCTCTCCTCCAACCCCGACTCCATGCACATTGTAGAACTTGCTGCACTCCTCCATGATATAGGTGATTATAAATACTTGAGAGATCCTTCGGAGGAGAAACTTGTTGAGAACTTTCTTAATGACTCGGGTATAGAGGAGAGTAAGAAAACAAAGATTATAAAGATCATTAACGGAATGGGGTTTAAAGATGAGCTCGCGGGGCTGACAAATAGTGATCTTCCTCCAGAATTTGGGGTTGTACAAGATGCTGATCGTCTTGATGCAATTGGTGCTATAGGAATTGCTCGTTGCTTTACTTTTGGCGGAAGTAGGAATAGAGTGCTACATGATCCTAACATTCAGCCACGATCTGATTTATCCAAGGAAAAGTACATGAAAAAAGAGGAGCAAACTACTGTGAATCACTTTCATGAGAAGCTTCTCAAGCTAAAGGATCTGATGAAAACAGAGGCTGGGCGGAAGAGAGCTGAGAAAAGGCACAAGTTCATGGAGGAGTTTCTTGTGGAGTTTTATGAAGAGTGGGATGGGAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD

Protein Analysis

225

Amino Acids

25.77

Weight (kDa)

5.68

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 28 - 134 3.9e-09 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17330
fragaria_vesca FvH4_4g36970 FvH4_4g36970 FvH4_4g36970
malus_domestica MD13G1004800.v1.1
prunus_persica Prupe.1G347900_v2.0.a1
pyrus_communis pycom13g00420
rosa_chinensis RchiOBHm_Chr4g0446761
rosa_laevigata RLG00000005634
rosa_multiflora Rmu_sc0001753.1_g000032
rosa_roxburghii Rroxscaffold_5G00387080
rosa_rugosa Rorug04G0374400 Rorug04G0374400
rosa_samantha Rh4AG435800 Rh4BG444700 Rh4CG461900 Rh4DG443600
rosa_wichuraiana Rw4G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 207, 296
AccB7I CCANNNNNTGG 1 cut(s) 368
AccII CGCG 2 cut(s) 110, 335
AciI CCGC 4 cut(s) 29, 335, 441, 595
AclWI GGATC 3 cut(s) 215, 461, 579
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 378, 509
AfiI CCNNNNNNNGG 2 cut(s) 90, 368
AluBI AGCT 4 cut(s) 331, 556, 565, 605
AluI AGCT 4 cut(s) 331, 556, 565, 605
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 8, 96
AlwI GGATC 3 cut(s) 215, 461, 579
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 262
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 88, 656
BcoDI GTCTC 2 cut(s) 8, 96
BfmI CTRYAG 1 cut(s) 411
BglII AGATCT 1 cut(s) 668
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 262
BmsI GCATC 3 cut(s) 77, 373, 388
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 235, 545
BsaBI GATNNNNATC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 368
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 80, 667
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 90, 368
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 597
BseRI GAGGAG 7 cut(s) 47, 133, 176, 245, 287, 536, 644
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 590
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 110, 335
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 90, 368
BsmAI GTCTC 2 cut(s) 8, 96
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
BspACI CCGC 4 cut(s) 29, 335, 441, 595
BspCNI CTCAG 1 cut(s) 598
BspFNI CGCG 2 cut(s) 110, 335
BspHI TCATGA 1 cut(s) 547
BspPI GGATC 3 cut(s) 215, 461, 579
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
BssT1I CCWWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 19, 535
Bst6I CTCTTC 3 cut(s) 6, 593, 648
BstAPI GCANNNNNTGC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 124, 333
BstDEI CTNAG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 80, 667
BstFNI CGCG 2 cut(s) 110, 335
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 8 cut(s) 223, 303, 355, 391, 469, 488, 574, 671
BstMAI GTCTC 2 cut(s) 8, 96
BstMBI GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
BstMWI GCNNNNNNNGC 3 cut(s) 337, 407, 562
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 2 cut(s) 110, 335
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 3 cut(s) 220, 571, 668
BstYI RGATCY 3 cut(s) 220, 571, 668
BtsCI GGATG 2 cut(s) 80, 667
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 124, 333
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 112
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 377, 508
CviAII CATG 7 cut(s) 52, 160, 191, 464, 511, 548, 625
CviJI RGCY 7 cut(s) 331, 340, 481, 556, 565, 590, 605
CviKI_1 RGCY 7 cut(s) 331, 340, 481, 556, 565, 590, 605
CviQI GTAC 2 cut(s) 377, 508
DdeI CTNAG 1 cut(s) 606
DpnI GATC 8 cut(s) 222, 302, 354, 390, 468, 487, 573, 670
DpnII GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 6, 593, 648
EarI CTCTTC 3 cut(s) 6, 593, 648
EciI GGCGGA 3 cut(s) 44, 456, 610
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 7 cut(s) 55, 163, 194, 467, 514, 551, 628
FatI CATG 7 cut(s) 51, 159, 190, 463, 510, 547, 624
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 180
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 1 cut(s) 345
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 112
Hin1II CATG 7 cut(s) 55, 163, 194, 467, 514, 551, 628
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 3 cut(s) 155, 260, 538
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 4 cut(s) 101, 229, 490, 576
Hpy188III TCNNGA 5 cut(s) 43, 362, 395, 548, 672
HpyAV CCTTC 2 cut(s) 19, 234
HpyCH4III ACNGT 2 cut(s) 19, 535
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 163, 182, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 337, 407, 562
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 7 cut(s) 55, 163, 194, 467, 514, 551, 628
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 2 cut(s) 375, 576
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 3 cut(s) 77, 373, 388
MaeII ACGT 1 cut(s) 87
MalI GATC 8 cut(s) 222, 302, 354, 390, 468, 487, 573, 670
MboI GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
MboII GAAGA 4 cut(s) 23, 347, 610, 665
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 3 cut(s) 220, 571, 668
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 3 cut(s) 365, 402, 417
MlyI GAGTC 2 cut(s) 149, 254
MmeI TCCRAC 1 cut(s) 171
MseI TTAA 3 cut(s) 255, 306, 321
MslI CAYNNNNRTG 1 cut(s) 546
MunI CAATTG 1 cut(s) 402
MvnI CGCG 2 cut(s) 110, 335
MwoI GCNNNNNNNGC 3 cut(s) 337, 407, 562
NdeII GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
NlaIII CATG 7 cut(s) 55, 163, 194, 467, 514, 551, 628
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 538
PflMI CCANNNNNTGG 1 cut(s) 368
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 2 cut(s) 149, 254
PpsI GAGTC 2 cut(s) 149, 254
PsiI TTATAA 2 cut(s) 207, 296
Psp124BI GAGCTC 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 3 cut(s) 220, 571, 668
RsaI GTAC 2 cut(s) 378, 509
RsaNI GTAC 2 cut(s) 377, 508
RseI CAYNNNNRTG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 255, 306, 321
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 8 cut(s) 220, 300, 352, 388, 466, 485, 571, 668
SchI GAGTC 2 cut(s) 149, 254
SduI GDGCHC 1 cut(s) 333
SetI ASST 7 cut(s) 90, 108, 202, 333, 558, 567, 607
SfaNI GCATC 3 cut(s) 77, 373, 388
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 214, 560
SmoI CTYRAG 2 cut(s) 214, 560
Sse9I AATT 3 cut(s) 365, 402, 417
SsiI CCGC 4 cut(s) 29, 335, 441, 595
SstI GAGCTC 1 cut(s) 333
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 19, 535
TaiI ACGT 1 cut(s) 90
TasI AATT 3 cut(s) 365, 402, 417
TatI WGTACW 2 cut(s) 376, 507
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 3 cut(s) 255, 306, 321
Tru9I TTAA 3 cut(s) 255, 306, 321
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 6 cut(s) 68, 527, 536, 593, 613, 666
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.