Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17630 AT1G17630 |
| fragaria_vesca | FvH4_6g33510 |
| malus_domestica | MD17G1187400.v1.1 |
| prunus_persica | Prupe.3G049200_v2.0.a1 |
| pyrus_communis | pycom17g19640 |
| rosa_laevigata | RLG00000020033 |
| rosa_multiflora | Rmu_co8432359.1_g000001 Rmu_sc0003507.1_g000019 Rmu_sc0024801.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00101870 Rroxscaffold_2G00101920 |
| rosa_rugosa | Rorug02G0380900 |
| rosa_samantha | Rh2AG434000 Rh2CG419700 Rh2DG452100 |
| rosa_wichuraiana | Rw2G035380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 962 |
| AbsI | CCTCGAGG | 1 cut(s) | 991 |
| AccI | GTMKAC | 2 cut(s) | 1014, 1318 |
| AccII | CGCG | 1 cut(s) | 1665 |
| AciI | CCGC | 2 cut(s) | 617, 1334 |
| AclI | AACGTT | 1 cut(s) | 330 |
| AclWI | GGATC | 4 cut(s) | 484, 1360, 1613, 2074 |
| AcsI | RAATTY | 4 cut(s) | 1090, 1668, 1831, 2054 |
| AcyI | GRCGYC | 1 cut(s) | 49 |
| AfaI | GTAC | 6 cut(s) | 131, 237, 509, 1436, 2051, 2076 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 617 |
| AflIII | ACRYGT | 1 cut(s) | 1009 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1038, 1070 |
| Alw21I | GWGCWC | 2 cut(s) | 1719, 1825 |
| Alw26I | GTCTC | 4 cut(s) | 332, 464, 1239, 2084 |
| AlwI | GGATC | 4 cut(s) | 484, 1360, 1613, 2074 |
| Ama87I | CYCGRG | 1 cut(s) | 991 |
| AoxI | GGCC | 1 cut(s) | 2140 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| ApoI | RAATTY | 4 cut(s) | 1090, 1668, 1831, 2054 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 772, 778, 804, 810 |
| AspS9I | GGNCC | 3 cut(s) | 1206, 1386, 2141 |
| AsuC2I | CCSGG | 1 cut(s) | 2102 |
| AsuHPI | GGTGA | 2 cut(s) | 893, 1438 |
| AvaI | CYCGRG | 1 cut(s) | 991 |
| AvaII | GGWCC | 2 cut(s) | 1206, 1386 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 499, 532 |
| BanII | GRGCYC | 3 cut(s) | 1707, 1803, 1825 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2033, 2065 |
| BbsI | GAAGAC | 1 cut(s) | 44 |
| Bbv12I | GWGCWC | 2 cut(s) | 1719, 1825 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 5 cut(s) | 619, 1595, 1950, 2102, 2147 |
| BciVI | GTATCC | 1 cut(s) | 618 |
| BclI | TGATCA | 1 cut(s) | 154 |
| BcnI | CCSGG | 1 cut(s) | 2102 |
| BcoDI | GTCTC | 4 cut(s) | 332, 464, 1239, 2084 |
| BfaI | CTAG | 2 cut(s) | 1469, 2177 |
| BfmI | CTRYAG | 1 cut(s) | 1633 |
| BfuI | GTATCC | 1 cut(s) | 618 |
| BisI | GCNGC | 1 cut(s) | 276 |
| BlpI | GCTNAGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 1 cut(s) | 277 |
| BmcAI | AGTACT | 1 cut(s) | 237 |
| Bme1390I | CCNGG | 1 cut(s) | 2102 |
| Bme18I | GGWCC | 2 cut(s) | 1206, 1386 |
| BmeT110I | CYCGRG | 1 cut(s) | 991 |
| BmgT120I | GGNCC | 3 cut(s) | 1206, 1386, 2141 |
| BmiI | GGNNCC | 1 cut(s) | 1800 |
| BmrFI | CCNGG | 1 cut(s) | 2102 |
| BmsI | GCATC | 7 cut(s) | 310, 622, 738, 1030, 1105, 1833, 1886 |
| BpiI | GAAGAC | 1 cut(s) | 44 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 207 |
| BpuEI | CTTGAG | 3 cut(s) | 449, 531, 690 |
| BpuMI | CCSGG | 1 cut(s) | 2102 |
| Bsa29I | ATCGAT | 1 cut(s) | 95 |
| BsaAI | YACGTR | 1 cut(s) | 1012 |
| BsaHI | GRCGYC | 1 cut(s) | 49 |
| BsaI | GGTCTC | 2 cut(s) | 464, 2084 |
| BsaJI | CCNNGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| BsaWI | WCCGGW | 1 cut(s) | 1900 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 617 |
| Bse3DI | GCAATG | 2 cut(s) | 218, 1860 |
| BseCI | ATCGAT | 1 cut(s) | 95 |
| BseDI | CCNNGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| BseGI | GGATG | 7 cut(s) | 630, 753, 864, 1120, 1594, 1848, 2176 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BseMI | GCAATG | 2 cut(s) | 218, 1860 |
| BseMII | CTCAG | 5 cut(s) | 221, 930, 1143, 1468, 1539 |
| BseRI | GAGGAG | 1 cut(s) | 1257 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| Bsh1236I | CGCG | 1 cut(s) | 1665 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1573 |
| BshFI | GGCC | 1 cut(s) | 2142 |
| BshVI | ATCGAT | 1 cut(s) | 95 |
| BsiEI | CGRYCG | 1 cut(s) | 1573 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1719, 1825 |
| BsiHKCI | CYCGRG | 1 cut(s) | 991 |
| BsiSI | CCGG | 5 cut(s) | 1057, 1267, 1840, 1901, 2102 |
| BslFI | GGGAC | 2 cut(s) | 482, 1674 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BsmAI | GTCTC | 4 cut(s) | 332, 464, 1239, 2084 |
| BsmBI | CGTCTC | 1 cut(s) | 1239 |
| BsmFI | GGGAC | 2 cut(s) | 482, 1674 |
| BsmI | GAATGC | 3 cut(s) | 427, 450, 1423 |
| BsnI | GGCC | 1 cut(s) | 2142 |
| Bso31I | GGTCTC | 2 cut(s) | 464, 2084 |
| BsoBI | CYCGRG | 1 cut(s) | 991 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1707, 1719, 1803, 1825 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 207 |
| Bsp19I | CCATGG | 1 cut(s) | 1369 |
| BspACI | CCGC | 2 cut(s) | 617, 1334 |
| BspANI | GGCC | 1 cut(s) | 2142 |
| BspCNI | CTCAG | 5 cut(s) | 220, 931, 1144, 1467, 1540 |
| BspDI | ATCGAT | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 1665 |
| BspHI | TCATGA | 1 cut(s) | 687 |
| BspLI | GGNNCC | 1 cut(s) | 1800 |
| BspPI | GGATC | 4 cut(s) | 484, 1360, 1613, 2074 |
| BspTNI | GGTCTC | 2 cut(s) | 464, 2084 |
| BsrDI | GCAATG | 2 cut(s) | 218, 1860 |
| BssECI | CCNNGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| BssNAI | GTATAC | 2 cut(s) | 1015, 1319 |
| BssNI | GRCGYC | 1 cut(s) | 49 |
| BssT1I | CCWWGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| Bst1107I | GTATAC | 2 cut(s) | 1015, 1319 |
| Bst4CI | ACNGT | 3 cut(s) | 115, 343, 671 |
| Bst6I | CTCTTC | 5 cut(s) | 170, 753, 972, 1234, 1354 |
| BstACI | GRCGYC | 1 cut(s) | 49 |
| BstBAI | YACGTR | 1 cut(s) | 1012 |
| BstC8I | GCNNGC | 1 cut(s) | 218 |
| BstDEI | CTNAG | 8 cut(s) | 207, 511, 939, 1152, 1454, 1548, 1559, 1886 |
| BstDSI | CCRYGG | 1 cut(s) | 1369 |
| BstF5I | GGATG | 7 cut(s) | 630, 753, 864, 1120, 1594, 1848, 2176 |
| BstFNI | CGCG | 1 cut(s) | 1665 |
| BstMAI | GTCTC | 4 cut(s) | 332, 464, 1239, 2084 |
| BstMCI | CGRYCG | 1 cut(s) | 1573 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 217, 1553, 1616, 1798 |
| BstNSI | RCATGY | 3 cut(s) | 1379, 1728, 1792 |
| BstSCI | CCNGG | 1 cut(s) | 2100 |
| BstSFI | CTRYAG | 1 cut(s) | 1633 |
| BstUI | CGCG | 1 cut(s) | 1665 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 1 cut(s) | 44 |
| BstX2I | RGATCY | 1 cut(s) | 1365 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1291 |
| BstYI | RGATCY | 1 cut(s) | 1365 |
| BstZ17I | GTATAC | 2 cut(s) | 1015, 1319 |
| Bsu15I | ATCGAT | 1 cut(s) | 95 |
| BsuI | GTATCC | 1 cut(s) | 618 |
| BsuRI | GGCC | 1 cut(s) | 2142 |
| BsuTUI | ATCGAT | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 1369 |
| BtsCI | GGATG | 7 cut(s) | 630, 753, 864, 1120, 1594, 1848, 2176 |
| BtsI | GCAGTG | 1 cut(s) | 818 |
| BtsIMutI | CAGTG | 3 cut(s) | 818, 1308, 1462 |
| Cac8I | GCNNGC | 1 cut(s) | 218 |
| CciI | TCATGA | 1 cut(s) | 687 |
| Cfr13I | GGNCC | 3 cut(s) | 1206, 1386, 2141 |
| ClaI | ATCGAT | 1 cut(s) | 95 |
| CseI | GACGC | 3 cut(s) | 38, 437, 1671 |
| Csp6I | GTAC | 6 cut(s) | 130, 236, 508, 1435, 2050, 2075 |
| CviQI | GTAC | 6 cut(s) | 130, 236, 508, 1435, 2050, 2075 |
| DdeI | CTNAG | 8 cut(s) | 207, 511, 939, 1152, 1454, 1548, 1559, 1886 |
| DraI | TTTAAA | 2 cut(s) | 766, 837 |
| Eam1104I | CTCTTC | 5 cut(s) | 170, 753, 972, 1234, 1354 |
| EarI | CTCTTC | 5 cut(s) | 170, 753, 972, 1234, 1354 |
| Ecl136II | GAGCTC | 1 cut(s) | 1823 |
| Eco130I | CCWWGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| Eco24I | GRGCYC | 3 cut(s) | 1707, 1803, 1825 |
| Eco31I | GGTCTC | 2 cut(s) | 464, 2084 |
| Eco47I | GGWCC | 2 cut(s) | 1206, 1386 |
| Eco53kI | GAGCTC | 1 cut(s) | 1823 |
| Eco88I | CYCGRG | 1 cut(s) | 991 |
| EcoICRI | GAGCTC | 1 cut(s) | 1823 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2141 |
| EcoRI | GAATTC | 2 cut(s) | 1090, 1831 |
| EcoT14I | CCWWGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| EcoT22I | ATGCAT | 4 cut(s) | 1423, 1539, 1726, 1848 |
| EcoT38I | GRGCYC | 3 cut(s) | 1707, 1803, 1825 |
| ErhI | CCWWGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| Esp3I | CGTCTC | 1 cut(s) | 1239 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 561, 593 |
| FaqI | GGGAC | 2 cut(s) | 482, 1674 |
| FauI | CCCGC | 1 cut(s) | 610 |
| FauNDI | CATATG | 1 cut(s) | 2127 |
| FbaI | TGATCA | 1 cut(s) | 154 |
| FblI | GTMKAC | 2 cut(s) | 1014, 1318 |
| Fnu4HI | GCNGC | 1 cut(s) | 276 |
| FokI | GGATG | 7 cut(s) | 637, 760, 871, 1127, 1581, 1855, 2183 |
| FriOI | GRGCYC | 3 cut(s) | 1707, 1803, 1825 |
| Fsp4HI | GCNGC | 1 cut(s) | 276 |
| FspBI | CTAG | 2 cut(s) | 1469, 2177 |
| GluI | GCNGC | 1 cut(s) | 276 |
| HaeIII | GGCC | 1 cut(s) | 2142 |
| HapII | CCGG | 5 cut(s) | 1057, 1267, 1840, 1901, 2102 |
| HgaI | GACGC | 3 cut(s) | 38, 437, 1671 |
| Hin1I | GRCGYC | 1 cut(s) | 49 |
| HincII | GTYRAC | 1 cut(s) | 452 |
| HindII | GTYRAC | 1 cut(s) | 452 |
| HinfI | GANTC | 9 cut(s) | 280, 309, 385, 574, 1168, 1250, 1351, 1465, 1964 |
| HpaII | CCGG | 5 cut(s) | 1057, 1267, 1840, 1901, 2102 |
| HphI | GGTGA | 2 cut(s) | 893, 1438 |
| Hpy166II | GTNNAC | 7 cut(s) | 7, 295, 452, 1015, 1124, 1319, 1858 |
| Hpy188I | TCNGA | 7 cut(s) | 247, 364, 558, 1153, 1358, 1416, 1761 |
| Hpy8I | GTNNAC | 7 cut(s) | 7, 295, 452, 1015, 1124, 1319, 1858 |
| Hpy99I | CGWCG | 1 cut(s) | 1133 |
| HpyAV | CCTTC | 4 cut(s) | 41, 323, 503, 615 |
| HpyCH4III | ACNGT | 3 cut(s) | 115, 343, 671 |
| HpyCH4IV | ACGT | 7 cut(s) | 143, 330, 602, 754, 1011, 1182, 1854 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 217, 1553, 1616, 1798 |
| HpyF3I | CTNAG | 8 cut(s) | 207, 511, 939, 1152, 1454, 1548, 1559, 1886 |
| HpySE526I | ACGT | 7 cut(s) | 143, 330, 602, 754, 1011, 1182, 1854 |
| Hsp92I | GRCGYC | 1 cut(s) | 49 |
| Ksp22I | TGATCA | 1 cut(s) | 154 |
| LmnI | GCTCC | 3 cut(s) | 1336, 1798, 1820 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 7 cut(s) | 310, 622, 738, 1030, 1105, 1833, 1886 |
| MaeI | CTAG | 2 cut(s) | 1469, 2177 |
| MaeII | ACGT | 7 cut(s) | 143, 330, 602, 754, 1011, 1182, 1854 |
| MaeIII | GTNAC | 7 cut(s) | 326, 402, 778, 1178, 1198, 1303, 1449 |
| MflI | RGATCY | 1 cut(s) | 1365 |
| MhlI | GDGCHC | 4 cut(s) | 1707, 1719, 1803, 1825 |
| MlyI | GAGTC | 2 cut(s) | 303, 1474 |
| MmeI | TCCRAC | 4 cut(s) | 342, 1137, 1956, 2006 |
| Mph1103I | ATGCAT | 4 cut(s) | 1423, 1539, 1726, 1848 |
| MseI | TTAA | 8 cut(s) | 588, 693, 732, 765, 836, 929, 1035, 1218 |
| MslI | CAYNNNNRTG | 4 cut(s) | 954, 1374, 1599, 1793 |
| MspI | CCGG | 5 cut(s) | 1057, 1267, 1840, 1901, 2102 |
| MspR9I | CCNGG | 1 cut(s) | 2102 |
| MssI | GTTTAAAC | 1 cut(s) | 766 |
| Mva1269I | GAATGC | 3 cut(s) | 427, 450, 1423 |
| MvnI | CGCG | 1 cut(s) | 1665 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 217, 1553, 1616, 1798 |
| NciI | CCSGG | 1 cut(s) | 2102 |
| NcoI | CCATGG | 1 cut(s) | 1369 |
| NdeI | CATATG | 1 cut(s) | 2127 |
| NlaIV | GGNNCC | 1 cut(s) | 1800 |
| NmuCI | GTSAC | 3 cut(s) | 402, 778, 1303 |
| NsiI | ATGCAT | 4 cut(s) | 1423, 1539, 1726, 1848 |
| NspI | RCATGY | 3 cut(s) | 1379, 1728, 1792 |
| PaeR7I | CTCGAG | 1 cut(s) | 991 |
| PagI | TCATGA | 1 cut(s) | 687 |
| PctI | GAATGC | 3 cut(s) | 427, 450, 1423 |
| PfeI | GAWTC | 7 cut(s) | 280, 385, 574, 1168, 1250, 1351, 1964 |
| PkrI | GCNGC | 1 cut(s) | 277 |
| Ple19I | CGATCG | 1 cut(s) | 1573 |
| PleI | GAGTC | 2 cut(s) | 303, 1473 |
| PmeI | GTTTAAAC | 1 cut(s) | 766 |
| PpsI | GAGTC | 2 cut(s) | 303, 1473 |
| Ppu21I | YACGTR | 1 cut(s) | 1012 |
| PsiI | TTATAA | 1 cut(s) | 962 |
| Psp124BI | GAGCTC | 1 cut(s) | 1825 |
| Psp1406I | AACGTT | 1 cut(s) | 330 |
| PspN4I | GGNNCC | 1 cut(s) | 1800 |
| PspPI | GGNCC | 3 cut(s) | 1206, 1386, 2141 |
| PspXI | VCTCGAGB | 1 cut(s) | 991 |
| PsuI | RGATCY | 1 cut(s) | 1365 |
| PvuI | CGATCG | 1 cut(s) | 1573 |
| RsaI | GTAC | 6 cut(s) | 131, 237, 509, 1436, 2051, 2076 |
| RsaNI | GTAC | 6 cut(s) | 130, 236, 508, 1435, 2050, 2075 |
| RseI | CAYNNNNRTG | 4 cut(s) | 954, 1374, 1599, 1793 |
| SacI | GAGCTC | 1 cut(s) | 1825 |
| SaqAI | TTAA | 8 cut(s) | 588, 693, 732, 765, 836, 929, 1035, 1218 |
| SatI | GCNGC | 1 cut(s) | 276 |
| Sau96I | GGNCC | 3 cut(s) | 1206, 1386, 2141 |
| ScaI | AGTACT | 1 cut(s) | 237 |
| SchI | GAGTC | 2 cut(s) | 303, 1474 |
| ScrFI | CCNGG | 1 cut(s) | 2102 |
| SduI | GDGCHC | 4 cut(s) | 1707, 1719, 1803, 1825 |
| SfaNI | GCATC | 7 cut(s) | 310, 622, 738, 1030, 1105, 1833, 1886 |
| SfcI | CTRYAG | 1 cut(s) | 1633 |
| Sfr274I | CTCGAG | 1 cut(s) | 991 |
| SinI | GGWCC | 2 cut(s) | 1206, 1386 |
| SlaI | CTCGAG | 1 cut(s) | 991 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 954, 1374, 1599, 1793 |
| SmlI | CTYRAG | 4 cut(s) | 428, 546, 705, 991 |
| SmoI | CTYRAG | 4 cut(s) | 428, 546, 705, 991 |
| SsiI | CCGC | 2 cut(s) | 617, 1334 |
| SspI | AATATT | 1 cut(s) | 1262 |
| SspMI | CTAG | 2 cut(s) | 1469, 2177 |
| SstI | GAGCTC | 1 cut(s) | 1825 |
| StyD4I | CCNGG | 1 cut(s) | 2100 |
| StyI | CCWWGG | 5 cut(s) | 44, 1234, 1369, 1741, 1803 |
| TaaI | ACNGT | 3 cut(s) | 115, 343, 671 |
| TaiI | ACGT | 7 cut(s) | 146, 333, 605, 757, 1014, 1185, 1857 |
| TatI | WGTACW | 3 cut(s) | 235, 2049, 2074 |
| TfiI | GAWTC | 7 cut(s) | 280, 385, 574, 1168, 1250, 1351, 1964 |
| Tru1I | TTAA | 8 cut(s) | 588, 693, 732, 765, 836, 929, 1035, 1218 |
| Tru9I | TTAA | 8 cut(s) | 588, 693, 732, 765, 836, 929, 1035, 1218 |
| TscAI | CASTG | 3 cut(s) | 818, 1308, 1462 |
| TseFI | GTSAC | 3 cut(s) | 402, 778, 1303 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 3 cut(s) | 402, 778, 1303 |
| TspGWI | ACGGA | 3 cut(s) | 248, 486, 1399 |
| TspRI | CASTG | 3 cut(s) | 818, 1308, 1462 |
| VpaK11BI | GGWCC | 2 cut(s) | 1206, 1386 |
| XapI | RAATTY | 4 cut(s) | 1090, 1668, 1831, 2054 |
| XbaI | TCTAGA | 1 cut(s) | 2176 |
| XceI | RCATGY | 3 cut(s) | 1379, 1728, 1792 |
| XhoI | CTCGAG | 1 cut(s) | 991 |
| XmiI | GTMKAC | 2 cut(s) | 1014, 1318 |
| XspI | CTAG | 2 cut(s) | 1469, 2177 |
| ZrmI | AGTACT | 1 cut(s) | 237 |
| Zsp2I | ATGCAT | 4 cut(s) | 1423, 1539, 1726, 1848 |