Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432359.1

Orthogroup ID

OG0014597

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1496

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1495 bp

atgcgaagacttggagtttgggctgatgggtttactcttcccctggttattagggcctgtgcatttatgggtagatttaggctatgcaagaatgtgcatagtcatgttttacaaatgggttttcaaaatcatctccatgttgtcaatgagttgatgggaatgtatgggaaacttggtaacatggactatgcccgccaactgtttgataaaatgagcgtgagaagctatgtttcttggaatactctggtttctagctatgcctttaactatgattgtgatggtgcatctgagatttttaataggatggagttagatgggttggagccaaaccctgtgacttggacatcattattgtcaagtcacgctcgttgtggccgcactgagaagaccatggagttgtttggtatgatgagggttagaggaattgagacaactgctgaagcgcttgctgtggtgttatctgtatgtgctgatgtggctgtggttgacaagggtaagaagattcatggatatgttgttagaggtggtttcgaagagtacttgtttgtgaaaaattcactaatatgcatgtatggaaaatgtggagatgtagaaaatgcatacaagttatttttggtgatggaaagcaaaaacctagtgagttggaatgctttgatctcatcatatgctgaatctggtttgtgtgatgaggcttttgcaatattttcccagctagatgctcatccagttatgacacctaatatcataagttggagtgctgttattcaagggttctcgtccactggacaaggagagaagtctctggaactctttcggcagatgcagagagcaggagtactgcccaattgtgtcactatgtccagcgtattatctgtttgtgcagaattagcagcaattaatcttggcagggaaattcatggtcatgtggtaagggctttgatggatagcaacattttggttggaaatggcttgatcaatatgtatacaaaatgtggaggttttgaggaagggcatagagtatttgaaaatattgacagtaaggacttgatttcgtggaacacaatgattgctggttatgggatgcatggactcggtgagaatgctctaagaatttttcataggatggtcaagacgggattcaagccagacaatgtaacattcatcgcagttctttctgcttgtagtcatgctgggctagttaccgagggtcgcctcctttttgatcaaatgattggagtttatggtgtaaaaccccaaatggagcactatgcatgcatggttgaccttcttggccgtgcggggttattgcaagaaggaagcaacattgtgaaaaacatgccaatgaaacccaatgcttgtgtctggagcgctcttctcaactcttgtaggatgcacaaaaatacagatattgcagaagaaactgccacccatatattcaatatgaactcggaaatggccgggagctacatgttgatgtcaaatatttatgctgcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

498

Amino Acids

55.23

Weight (kDa)

6.6

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17630 AT1G17630
fragaria_vesca	FvH4_6g33510
malus_domestica	MD17G1187400.v1.1
prunus_persica	Prupe.3G049200_v2.0.a1
pyrus_communis	pycom17g19640
rosa_laevigata	RLG00000020033
rosa_multiflora	Rmu_co8432359.1_g000001 Rmu_sc0003507.1_g000019 Rmu_sc0024801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101870 Rroxscaffold_2G00101920
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG434000 Rh2CG419700 Rh2DG452100
rosa_wichuraiana	Rw2G035380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	983
AciI	CCGC	3 cut(s)	193, 376, 1298
AcoI	YGGCCR	3 cut(s)	373, 1291, 1455
AcsI	RAATTY	3 cut(s)	553, 912, 1110
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	539, 837
AfeI	AGCGCT	2 cut(s)	444, 1369
AflIII	ACRYGT	1 cut(s)	1467
AgsI	TTSAA	5 cut(s)	125, 767, 1025, 1141, 1438
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	225, 255, 712, 1464
AluI	AGCT	4 cut(s)	225, 255, 712, 1464
Alw21I	GWGCWC	1 cut(s)	1266
Alw26I	GTCTC	2 cut(s)	422, 804
Aor51HI	AGCGCT	2 cut(s)	444, 1369
AoxI	GGCC	4 cut(s)	54, 373, 1291, 1455
ApeKI	GCWGC	2 cut(s)	890, 1490
ApoI	RAATTY	3 cut(s)	553, 912, 1110
ArsI	GACNNNNNNTTYG	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	897
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	445, 1370
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	1459
AsuHPI	GGTGA	2 cut(s)	628, 1106
AsuII	TTCGAA	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	13, 392
Bbv12I	GWGCWC	1 cut(s)	1266
BbvI	GCAGC	2 cut(s)	902, 1477
BccI	CCATC	8 cut(s)	20, 148, 272, 298, 308, 613, 934, 1117
BceAI	ACGGC	1 cut(s)	1278
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	2 cut(s)	972, 1222
BcnI	CCSGG	1 cut(s)	1459
BcoDI	GTCTC	2 cut(s)	422, 804
BfaI	CTAG	4 cut(s)	252, 635, 713, 1196
BfoI	RGCGCY	2 cut(s)	446, 1371
BisI	GCNGC	3 cut(s)	376, 891, 1491
BlsI	GCNGC	3 cut(s)	377, 892, 1492
BmcAI	AGTACT	2 cut(s)	539, 837
Bme1390I	CCNGG	2 cut(s)	44, 1459
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	44, 1459
BmsI	GCATC	5 cut(s)	293, 706, 810, 1071, 1380
BpiI	GAAGAC	2 cut(s)	13, 392
BpmI	CTGGAG	1 cut(s)	1384
Bpu14I	TTCGAA	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	1459
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	3 cut(s)	42, 390, 1203
Bse1I	ACTGG	2 cut(s)	725, 787
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	42, 390, 1203
BseGI	GGATG	5 cut(s)	309, 721, 1086, 1128, 1395
BseJI	GATNNNNATC	1 cut(s)	720
BseMII	CTCAG	2 cut(s)	279, 372
BseNI	ACTGG	2 cut(s)	725, 787
BseXI	GCAGC	2 cut(s)	902, 1477
BseYI	CCCAGC	2 cut(s)	708, 1190
BsgI	GTGCAG	1 cut(s)	900
BshFI	GGCC	4 cut(s)	56, 375, 1293, 1457
BsiHKAI	GWGCWC	1 cut(s)	1266
BsiSI	CCGG	1 cut(s)	1458
BsmAI	GTCTC	2 cut(s)	422, 804
BsmI	GAATGC	2 cut(s)	652, 1105
BsnI	GGCC	4 cut(s)	56, 375, 1293, 1457
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	1266
Bsp143I	GATC	3 cut(s)	654, 972, 1222
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	3 cut(s)	193, 376, 1298
BspANI	GGCC	4 cut(s)	56, 375, 1293, 1457
BspCNI	CTCAG	2 cut(s)	280, 373
BspLI	GGNNCC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	1377
BspT104I	TTCGAA	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	725, 787
BssECI	CCNNGG	3 cut(s)	42, 390, 1203
BssMI	GATC	3 cut(s)	654, 972, 1222
BssNAI	GTATAC	1 cut(s)	984
BssT1I	CCWWGG	1 cut(s)	390
Bst1107I	GTATAC	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	201, 1037
Bst6I	CTCTTC	3 cut(s)	42, 528, 1377
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	3 cut(s)	193, 447, 1273
BstDEI	CTNAG	3 cut(s)	288, 381, 1106
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	5 cut(s)	309, 721, 1086, 1128, 1395
BstH2I	RGCGCY	2 cut(s)	446, 1371
BstHHI	GCGC	2 cut(s)	445, 1370
BstKTI	GATC	3 cut(s)	657, 975, 1225
BstMAI	GTCTC	2 cut(s)	422, 804
BstMBI	GATC	3 cut(s)	654, 972, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 476, 887
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	4 cut(s)	571, 1275, 1339, 1471
BstSCI	CCNGG	2 cut(s)	42, 1457
BstV1I	GCAGC	2 cut(s)	902, 1477
BstV2I	GAAGAC	2 cut(s)	13, 392
BstZ17I	GTATAC	1 cut(s)	984
BsuRI	GGCC	4 cut(s)	56, 375, 1293, 1457
BtgI	CCRYGG	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	1147
BtsCI	GGATG	5 cut(s)	309, 721, 1086, 1128, 1395
BtsIMutI	CAGTG	2 cut(s)	378, 780
Cac8I	GCNNGC	3 cut(s)	193, 447, 1273
CfoI	GCGC	2 cut(s)	445, 1370
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	538, 836
CviQI	GTAC	2 cut(s)	538, 836
DdeI	CTNAG	3 cut(s)	288, 381, 1106
DpnI	GATC	3 cut(s)	656, 974, 1224
DpnII	GATC	3 cut(s)	654, 972, 1222
EaeI	YGGCCR	3 cut(s)	373, 1291, 1455
Eam1104I	CTCTTC	3 cut(s)	42, 528, 1377
EarI	CTCTTC	3 cut(s)	42, 528, 1377
Eco130I	CCWWGG	1 cut(s)	390
Eco47III	AGCGCT	2 cut(s)	444, 1369
Eco57I	CTGAAG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	5 cut(s)	569, 601, 1086, 1273, 1277
ErhI	CCWWGG	1 cut(s)	390
FauI	CCCGC	2 cut(s)	200, 1291
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	2 cut(s)	972, 1222
FblI	GTMKAC	1 cut(s)	983
Fnu4HI	GCNGC	3 cut(s)	376, 891, 1491
FokI	GGATG	5 cut(s)	316, 708, 1093, 1135, 1402
Fsp4HI	GCNGC	3 cut(s)	376, 891, 1491
FspBI	CTAG	4 cut(s)	252, 635, 713, 1196
GlaI	GCGC	2 cut(s)	444, 1369
GluI	GCNGC	3 cut(s)	376, 891, 1491
GsaI	CCCAGC	2 cut(s)	712, 1194
GsuI	CTGGAG	1 cut(s)	1384
HaeII	RGCGCY	2 cut(s)	446, 1371
HaeIII	GGCC	4 cut(s)	56, 375, 1293, 1457
HapII	CCGG	1 cut(s)	1458
HhaI	GCGC	2 cut(s)	445, 1370
Hin6I	GCGC	2 cut(s)	443, 1368
HinP1I	GCGC	2 cut(s)	443, 1368
HincII	GTYRAC	2 cut(s)	487, 1282
HindII	GTYRAC	2 cut(s)	487, 1282
HinfI	GANTC	4 cut(s)	502, 671, 1089, 1137
HpaII	CCGG	1 cut(s)	1458
HphI	GGTGA	2 cut(s)	628, 1106
Hpy166II	GTNNAC	5 cut(s)	33, 487, 780, 984, 1282
Hpy188I	TCNGA	2 cut(s)	289, 1450
Hpy188III	TCNNGA	3 cut(s)	803, 1129, 1363
Hpy8I	GTNNAC	5 cut(s)	33, 487, 780, 984, 1282
HpyAV	CCTTC	3 cut(s)	1001, 1295, 1307
HpyCH4III	ACNGT	2 cut(s)	201, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 476, 887
HpyF3I	CTNAG	3 cut(s)	288, 381, 1106
HspAI	GCGC	2 cut(s)	443, 1368
Ksp22I	TGATCA	2 cut(s)	972, 1222
Kzo9I	GATC	3 cut(s)	654, 972, 1222
LguI	GCTCTTC	1 cut(s)	1377
LmnI	GCTCC	4 cut(s)	322, 1261, 1365, 1461
Lsp1109I	GCAGC	2 cut(s)	902, 1477
LweI	GCATC	5 cut(s)	293, 706, 810, 1071, 1380
MaeI	CTAG	4 cut(s)	252, 635, 713, 1196
MaeIII	GTNAC	6 cut(s)	176, 334, 359, 850, 1153, 1198
MalI	GATC	3 cut(s)	656, 974, 1224
MboI	GATC	3 cut(s)	654, 972, 1222
MboII	GAAGA	7 cut(s)	18, 29, 397, 511, 545, 1364, 1427
MfeI	CAATTG	1 cut(s)	844
MhlI	GDGCHC	1 cut(s)	1266
MluCI	AATT	7 cut(s)	423, 553, 844, 884, 894, 912, 1110
MlyI	GAGTC	1 cut(s)	1083
MmeI	TCCRAC	4 cut(s)	300, 623, 731, 940
MnlI	CCTC	8 cut(s)	405, 413, 515, 682, 989, 997, 1198, 1223
Mph1103I	ATGCAT	5 cut(s)	569, 601, 1086, 1273, 1277
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	3 cut(s)	264, 297, 897
MslI	CAYNNNNRTG	7 cut(s)	102, 135, 510, 562, 921, 1340, 1472
MspI	CCGG	1 cut(s)	1458
MspR9I	CCNGG	2 cut(s)	44, 1459
MunI	CAATTG	1 cut(s)	844
Mva1269I	GAATGC	2 cut(s)	652, 1105
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	222, 476, 887
NciI	CCSGG	1 cut(s)	1459
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	3 cut(s)	654, 972, 1222
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	3 cut(s)	334, 359, 850
NsiI	ATGCAT	5 cut(s)	569, 601, 1086, 1273, 1277
NspI	RCATGY	4 cut(s)	571, 1275, 1339, 1471
NspV	TTCGAA	1 cut(s)	531
PaeI	GCATGC	1 cut(s)	1275
PciI	ACATGT	1 cut(s)	1467
PciSI	GCTCTTC	1 cut(s)	1377
PctI	GAATGC	2 cut(s)	652, 1105
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	3 cut(s)	502, 671, 1137
PkrI	GCNGC	3 cut(s)	377, 892, 1492
PleI	GAGTC	1 cut(s)	1083
PpsI	GAGTC	1 cut(s)	1083
PscI	ACATGT	1 cut(s)	1467
PshBI	ATTAAT	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	42
PspFI	CCCAGC	2 cut(s)	708, 1190
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	2 cut(s)	539, 837
RsaNI	GTAC	2 cut(s)	538, 836
RseI	CAYNNNNRTG	7 cut(s)	102, 135, 510, 562, 921, 1340, 1472
SapI	GCTCTTC	1 cut(s)	1377
SaqAI	TTAA	3 cut(s)	264, 297, 897
SatI	GCNGC	3 cut(s)	376, 891, 1491
Sau3AI	GATC	3 cut(s)	654, 972, 1222
Sau96I	GGNCC	1 cut(s)	54
ScaI	AGTACT	2 cut(s)	539, 837
SchI	GAGTC	1 cut(s)	1083
ScrFI	CCNGG	2 cut(s)	44, 1459
SduI	GDGCHC	1 cut(s)	1266
SetI	ASST	9 cut(s)	227, 257, 526, 636, 714, 739, 1000, 1287, 1466
SfaNI	GCATC	5 cut(s)	293, 706, 810, 1071, 1380
SfuI	TTCGAA	1 cut(s)	531
SmiMI	CAYNNNNRTG	7 cut(s)	102, 135, 510, 562, 921, 1340, 1472
SphI	GCATGC	1 cut(s)	1275
Sse9I	AATT	7 cut(s)	423, 553, 844, 884, 894, 912, 1110
SsiI	CCGC	3 cut(s)	193, 376, 1298
SspI	AATATT	3 cut(s)	702, 1030, 1483
SspMI	CTAG	4 cut(s)	252, 635, 713, 1196
StyD4I	CCNGG	2 cut(s)	42, 1457
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	201, 1037
TaqI	TCGA	1 cut(s)	531
TasI	AATT	7 cut(s)	423, 553, 844, 884, 894, 912, 1110
TatI	WGTACW	2 cut(s)	537, 835
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	3 cut(s)	502, 671, 1137
Tru1I	TTAA	3 cut(s)	264, 297, 897
Tru9I	TTAA	3 cut(s)	264, 297, 897
TscAI	CASTG	2 cut(s)	385, 787
TseFI	GTSAC	3 cut(s)	334, 359, 850
TseI	GCWGC	2 cut(s)	890, 1490
Tsp45I	GTSAC	3 cut(s)	334, 359, 850
TspDTI	ATGAA	6 cut(s)	494, 905, 1106, 1150, 1358, 1457
TspRI	CASTG	2 cut(s)	385, 787
VspI	ATTAAT	1 cut(s)	897
XapI	RAATTY	3 cut(s)	553, 912, 1110
XceI	RCATGY	4 cut(s)	571, 1275, 1339, 1471
XmiI	GTMKAC	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	4 cut(s)	252, 635, 713, 1196
ZrmI	AGTACT	2 cut(s)	539, 837
Zsp2I	ATGCAT	5 cut(s)	569, 601, 1086, 1273, 1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.