FvH4_6g33510

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26525542 .. 26527362
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33510.t1

Sequence Viewer

Length: 1821 bp
ATGCTCTTGTGGAATTCAATTCTTAGAGCGAATGTGTCTCATGGGTTTTATGAAAAAGCACTCAAACTATATGATAAAATGCGAAGACTGGGAGTTTGGGCTGATGGGTTTACTCTTCCCCTGGTTAGTAGTGCCTGTGCATTTATGGGTAGGTCTAGGCTATGCAAGAATGTGCATAGTCATGTTATACAAATGGGTTTTCAAAATCATCTCCATGTAGTCAATGAGTTGATTGGAATGTATGGGAAACTTGGTAGAATGGAATGTGCCCGCCAACTGTTTGATAAAATGAGTGTGAGAAGCTATGTTTCTTGGAATACTCTGGTTTCTAGTTATGCCTTGAACTATGATTGTGATGGTGCATCTGAGATTTATAATAGGATGGAGTTAGATGGGCTGAAGCCAAACCCTGTGACTTGGACATCATTATTGTCAAGTCATGCTCGTTGTGGCCGCAATGAGAAGACCATGGAGTTGTTTGATATGATGAGGGTCAGAGGAACTGAGACAACTGCTGAAGTGCTTGCTGTGGTGTTATCTGTATGTGCTGATATGGCTTTGGTTGACAAGGGTAAGAAAATTCATGGATATGTTATTAGAGGTGGTTTTGGAGAGTACTTGTTTGTAAAAAATGCACTAATATGCATGTATGGAAAATGTGGAGATGTAGAAAATGCATACAAGTTATTTGTGTTAATGGAAAGCAAAAACCTAGTGAGTTGGAATGCTTTGATCTCATCATATGCTGAATCTGGTTTGTGTGATGAGGCTTATGCAATATTTTCGCAGCTAGATGCTCATCCAGTTATGACACCTAATATCATAAGTTGGAGTGCTGTTATTCAAGGTTTTTCATCCACTGGACAAGGAGAGAAGTCTCTGGAACTCTTTCGGCAGATGCAGGGAGCAGGAGTACTACCCAATTGTGTCACTATATCCAGTCTATTATCTGTTTGTGCAGAATTAGCAGCAATTAATCTTGGCAGGGAAATTCATGGTCATGTGTTAAGGGCTTTGATGGATAGTAACATTTTGGTTGGAAATGGCTTGATTAATATGTACACAAAAGGTGGAAGTTTTAATGAAGGGAATAGAGTATTTGAGAATATTGACAGTAAGGACTTGATTTCGTGGAACACAATGATTGCTGGTTATGGGATGCATGGACGCGGTGAGAATGCTCTAAGAATTTTTCATAGGATGGTCAAAATGGGATTCAAGCCAGACAACGTAACATTCATCGCTGTTCTTTCTGCTTGTAGTCATGCTGGGTTAGTTACCGAGGGCCGCCTCCTTTTTTATCAAATGATTGGAGTTTATGGTGTAAAACCCCAAATGGAGCACTATGCATGCATGGTTGATCTTCTTGGCCGTGCTGGGTTATTGCAAGAAGGAAGCAACATTGTGAAAAACATGCCAATGAAACCCAATGCTTGTGTCTGGAGCGCTCTTCTCAACTCTTGTAGGATGCACAAAAATACAGATATTGCGGAAGAAACTGCCACCCATATATTCAATTTGAACTCAGAAATGGCTGGGAGCTACATGTTGATGTCTAATATTTACGCTGCTGGCGGGAGATGGGAGGACTCAGCCAAAGTGAGGATCTTAGCCAAGGAAAAGGGTTTAAGGAAAATCCGGGGACAGAGCTGGATTCAGGTTAAGAATAAGGTTTTTGTATTCTCAGCAGGGAATACCATGCAAGCAGGCTTGGAGTTAATTTACGCCATCCTTTATCACTTGGCACTTCAAATGGAACGTGAGGGCTATGTACCTAAGATGGGAGTCAGTCAAGAGAATACTGACAAAGAACTGGATTAA

Protein Analysis

607

Amino Acids

67.49

Weight (kDa)

8.48

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 4 - 32 5.7e-06 PPR repeat
PPR_2 PF13041 102 - 148 4.5e-07 PPR repeat family
PPR_1 PF12854 131 - 164 1.3e-06 PPR repeat
PPR_2 PF13041 272 - 320 1.2e-09 PPR repeat family
PPR_2 PF13041 374 - 421 1.7e-12 PPR repeat family
PPR PF01535 376 - 406 3.3e-08 PPR repeat
E_motif PF20431 491 - 553 5.5e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014597)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccII CGCG 1 cut(s) 1170
AciI CCGC 6 cut(s) 271, 454, 1170, 1288, 1490, 1575
AclWI GGATC 1 cut(s) 1613
AcoI YGGCCR 2 cut(s) 451, 1369
AcsI RAATTY 4 cut(s) 13, 579, 990, 1188
AcuI CTGAAG 2 cut(s) 419, 537
AfaI GTAC 4 cut(s) 617, 915, 1061, 1773
AfeI AGCGCT 1 cut(s) 1447
AfiI CCNNNNNNNGG 2 cut(s) 1602, 1781
AflIII ACRYGT 1 cut(s) 1545
AgsI TTSAA 8 cut(s) 18, 203, 343, 845, 1219, 1516, 1522, 1751
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 4 cut(s) 303, 790, 1542, 1650
AluI AGCT 4 cut(s) 303, 790, 1542, 1650
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 3 cut(s) 42, 500, 882
AlwI GGATC 1 cut(s) 1613
Aor51HI AGCGCT 1 cut(s) 1447
AoxI GGCC 3 cut(s) 451, 1285, 1369
ApeKI GCWGC 3 cut(s) 787, 968, 1568
ApoI RAATTY 4 cut(s) 13, 579, 990, 1188
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AseI ATTAAT 2 cut(s) 975, 1053
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 1448
AspS9I GGNCC 1 cut(s) 1285
AsuC2I CCSGG 1 cut(s) 1640
AsuHPI GGTGA 1 cut(s) 1184
BaeGI GKGCMC 1 cut(s) 271
BbsI GAAGAC 2 cut(s) 91, 470
Bbv12I GWGCWC 1 cut(s) 1344
BbvI GCAGC 3 cut(s) 799, 980, 1555
BccI CCATC 9 cut(s) 98, 350, 376, 386, 1012, 1195, 1575, 1736, 1774
BceAI ACGGC 1 cut(s) 1356
BcgI CGANNNNNNTGC 2 cut(s) 765, 799
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 1640
BcoDI GTCTC 3 cut(s) 42, 500, 882
BfaI CTAG 4 cut(s) 156, 330, 713, 791
BfoI RGCGCY 1 cut(s) 1449
BisI GCNGC 5 cut(s) 454, 788, 969, 1288, 1569
BlsI GCNGC 5 cut(s) 455, 789, 970, 1289, 1570
BmcAI AGTACT 2 cut(s) 617, 915
Bme1390I CCNGG 2 cut(s) 122, 1640
BmgT120I GGNCC 1 cut(s) 1285
BmrFI CCNGG 2 cut(s) 122, 1640
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 5 cut(s) 371, 784, 888, 1149, 1458
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 2 cut(s) 91, 470
BpmI CTGGAG 1 cut(s) 1462
BpuMI CCSGG 1 cut(s) 1640
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 5 cut(s) 120, 468, 1281, 1614, 1639
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 2 cut(s) 1602, 1781
Bse1I ACTGG 5 cut(s) 93, 803, 865, 939, 1818
Bse3DI GCAATG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 5 cut(s) 120, 468, 1281, 1614, 1639
BseGI GGATG 7 cut(s) 387, 799, 854, 1164, 1206, 1473, 1728
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 2 cut(s) 1602, 1781
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 5 cut(s) 357, 495, 1539, 1605, 1698
BseNI ACTGG 5 cut(s) 93, 803, 865, 939, 1818
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 3 cut(s) 799, 980, 1555
BseYI CCCAGC 3 cut(s) 1268, 1376, 1535
BsgI GTGCAG 1 cut(s) 978
Bsh1236I CGCG 1 cut(s) 1170
BshFI GGCC 3 cut(s) 453, 1287, 1371
BsiHKAI GWGCWC 1 cut(s) 1344
BsiSI CCGG 1 cut(s) 1639
BslFI GGGAC 1 cut(s) 1656
BslI CCNNNNNNNGG 2 cut(s) 1602, 1781
BsmAI GTCTC 3 cut(s) 42, 500, 882
BsmFI GGGAC 1 cut(s) 1656
BsmI GAATGC 2 cut(s) 730, 1183
BsnI GGCC 3 cut(s) 453, 1287, 1371
Bsp1286I GDGCHC 2 cut(s) 271, 1344
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 3 cut(s) 732, 1360, 1605
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 6 cut(s) 271, 454, 1170, 1288, 1490, 1575
BspANI GGCC 3 cut(s) 453, 1287, 1371
BspCNI CTCAG 5 cut(s) 358, 496, 1538, 1604, 1697
BspFNI CGCG 1 cut(s) 1170
BspPI GGATC 1 cut(s) 1613
BspQI GCTCTTC 1 cut(s) 1455
BsrDI GCAATG 1 cut(s) 463
BsrGI TGTACA 1 cut(s) 1059
BsrI ACTGG 5 cut(s) 93, 803, 865, 939, 1818
BssECI CCNNGG 5 cut(s) 120, 468, 1281, 1614, 1639
BssMI GATC 3 cut(s) 732, 1360, 1605
BssT1I CCWWGG 2 cut(s) 468, 1614
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 279, 1115
Bst6I CTCTTC 2 cut(s) 120, 1455
BstAUI TGTACA 1 cut(s) 1059
BstC8I GCNNGC 6 cut(s) 271, 525, 1351, 1573, 1704, 1708
BstDEI CTNAG 9 cut(s) 23, 366, 504, 1184, 1525, 1591, 1609, 1684, 1776
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 7 cut(s) 387, 799, 854, 1164, 1206, 1473, 1728
BstFNI CGCG 1 cut(s) 1170
BstH2I RGCGCY 1 cut(s) 1449
BstHHI GCGC 1 cut(s) 1448
BstKTI GATC 3 cut(s) 735, 1363, 1608
BstMAI GTCTC 3 cut(s) 42, 500, 882
BstMBI GATC 3 cut(s) 732, 1360, 1605
BstMWI GCNNNNNNNGC 2 cut(s) 554, 965
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 4 cut(s) 649, 1353, 1417, 1549
BstSCI CCNGG 2 cut(s) 120, 1638
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 1 cut(s) 1170
BstV1I GCAGC 3 cut(s) 799, 980, 1555
BstV2I GAAGAC 2 cut(s) 91, 470
BstX2I RGATCY 1 cut(s) 1605
BstYI RGATCY 1 cut(s) 1605
BsuRI GGCC 3 cut(s) 453, 1287, 1371
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 1225
BtsCI GGATG 7 cut(s) 387, 799, 854, 1164, 1206, 1473, 1728
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 6 cut(s) 271, 525, 1351, 1573, 1704, 1708
CfoI GCGC 1 cut(s) 1448
Cfr13I GGNCC 1 cut(s) 1285
CseI GACGC 1 cut(s) 1176
Csp6I GTAC 4 cut(s) 616, 914, 1060, 1772
CviQI GTAC 4 cut(s) 616, 914, 1060, 1772
DdeI CTNAG 9 cut(s) 23, 366, 504, 1184, 1525, 1591, 1609, 1684, 1776
DpnI GATC 3 cut(s) 734, 1362, 1607
DpnII GATC 3 cut(s) 732, 1360, 1605
EaeI YGGCCR 2 cut(s) 451, 1369
Eam1104I CTCTTC 2 cut(s) 120, 1455
EarI CTCTTC 2 cut(s) 120, 1455
Eco130I CCWWGG 2 cut(s) 468, 1614
Eco47III AGCGCT 1 cut(s) 1447
Eco57I CTGAAG 2 cut(s) 419, 537
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 468, 1614
EcoT22I ATGCAT 5 cut(s) 647, 679, 1164, 1351, 1355
ErhI CCWWGG 2 cut(s) 468, 1614
FaqI GGGAC 1 cut(s) 1656
FauI CCCGC 2 cut(s) 278, 1568
FauNDI CATATG 1 cut(s) 742
Fnu4HI GCNGC 5 cut(s) 454, 788, 969, 1288, 1569
FokI GGATG 7 cut(s) 394, 786, 841, 1171, 1213, 1480, 1715
Fsp4HI GCNGC 5 cut(s) 454, 788, 969, 1288, 1569
FspBI CTAG 4 cut(s) 156, 330, 713, 791
GlaI GCGC 1 cut(s) 1447
GluI GCNGC 5 cut(s) 454, 788, 969, 1288, 1569
GsaI CCCAGC 3 cut(s) 1272, 1380, 1539
GsuI CTGGAG 1 cut(s) 1462
HaeII RGCGCY 1 cut(s) 1449
HaeIII GGCC 3 cut(s) 453, 1287, 1371
HapII CCGG 1 cut(s) 1639
HgaI GACGC 1 cut(s) 1176
HhaI GCGC 1 cut(s) 1448
Hin6I GCGC 1 cut(s) 1446
HinP1I GCGC 1 cut(s) 1446
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 5 cut(s) 749, 1215, 1589, 1654, 1785
HpaII CCGG 1 cut(s) 1639
HphI GGTGA 1 cut(s) 1184
Hpy166II GTNNAC 3 cut(s) 111, 565, 1062
Hpy188I TCNGA 3 cut(s) 367, 497, 1528
Hpy188III TCNNGA 3 cut(s) 881, 1441, 1793
Hpy8I GTNNAC 3 cut(s) 111, 565, 1062
HpyAV CCTTC 2 cut(s) 1079, 1385
HpyCH4III ACNGT 2 cut(s) 279, 1115
HpyCH4IV ACGT 2 cut(s) 1230, 1759
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 965
HpyF3I CTNAG 9 cut(s) 23, 366, 504, 1184, 1525, 1591, 1609, 1684, 1776
HpySE526I ACGT 2 cut(s) 1230, 1759
HspAI GCGC 1 cut(s) 1446
Kzo9I GATC 3 cut(s) 732, 1360, 1605
LguI GCTCTTC 1 cut(s) 1455
LmnI GCTCC 4 cut(s) 905, 1339, 1443, 1539
Lsp1109I GCAGC 3 cut(s) 799, 980, 1555
LweI GCATC 5 cut(s) 371, 784, 888, 1149, 1458
MaeI CTAG 4 cut(s) 156, 330, 713, 791
MaeII ACGT 2 cut(s) 1230, 1759
MaeIII GTNAC 5 cut(s) 412, 928, 1025, 1231, 1276
MalI GATC 3 cut(s) 734, 1362, 1607
MboI GATC 3 cut(s) 732, 1360, 1605
MboII GAAGA 6 cut(s) 96, 107, 475, 1355, 1442, 1505
MfeI CAATTG 1 cut(s) 922
MflI RGATCY 1 cut(s) 1605
MhlI GDGCHC 2 cut(s) 271, 1344
MlyI GAGTC 2 cut(s) 1583, 1794
MmeI TCCRAC 3 cut(s) 701, 809, 1018
MnlI CCTC 9 cut(s) 483, 491, 593, 760, 1276, 1301, 1579, 1596, 1756
Mph1103I ATGCAT 5 cut(s) 647, 679, 1164, 1351, 1355
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 9 cut(s) 695, 975, 1007, 1053, 1080, 1628, 1662, 1718, 1819
MslI CAYNNNNRTG 7 cut(s) 180, 213, 588, 640, 999, 1418, 1550
MspI CCGG 1 cut(s) 1639
MspR9I CCNGG 2 cut(s) 122, 1640
MunI CAATTG 1 cut(s) 922
Mva1269I GAATGC 2 cut(s) 730, 1183
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 1170
MwoI GCNNNNNNNGC 2 cut(s) 554, 965
NciI CCSGG 1 cut(s) 1640
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 742
NdeII GATC 3 cut(s) 732, 1360, 1605
NmuCI GTSAC 2 cut(s) 412, 928
NsiI ATGCAT 5 cut(s) 647, 679, 1164, 1351, 1355
NspI RCATGY 4 cut(s) 649, 1353, 1417, 1549
PaeI GCATGC 1 cut(s) 1353
PciI ACATGT 1 cut(s) 1545
PciSI GCTCTTC 1 cut(s) 1455
PctI GAATGC 2 cut(s) 730, 1183
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 3 cut(s) 749, 1215, 1654
PkrI GCNGC 5 cut(s) 455, 789, 970, 1289, 1570
PleI GAGTC 2 cut(s) 1583, 1793
PpsI GAGTC 2 cut(s) 1583, 1793
PscI ACATGT 1 cut(s) 1545
PshBI ATTAAT 2 cut(s) 975, 1053
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 120
PspFI CCCAGC 3 cut(s) 1268, 1376, 1535
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 1285
PsuI RGATCY 1 cut(s) 1605
RsaI GTAC 4 cut(s) 617, 915, 1061, 1773
RsaNI GTAC 4 cut(s) 616, 914, 1060, 1772
RseI CAYNNNNRTG 7 cut(s) 180, 213, 588, 640, 999, 1418, 1550
SapI GCTCTTC 1 cut(s) 1455
SaqAI TTAA 9 cut(s) 695, 975, 1007, 1053, 1080, 1628, 1662, 1718, 1819
SatI GCNGC 5 cut(s) 454, 788, 969, 1288, 1569
Sau3AI GATC 3 cut(s) 732, 1360, 1605
Sau96I GGNCC 1 cut(s) 1285
ScaI AGTACT 2 cut(s) 617, 915
SchI GAGTC 2 cut(s) 1583, 1794
ScrFI CCNGG 2 cut(s) 122, 1640
SduI GDGCHC 2 cut(s) 271, 1344
SfaNI GCATC 5 cut(s) 371, 784, 888, 1149, 1458
SmiMI CAYNNNNRTG 7 cut(s) 180, 213, 588, 640, 999, 1418, 1550
SphI GCATGC 1 cut(s) 1353
SsiI CCGC 6 cut(s) 271, 454, 1170, 1288, 1490, 1575
SspI AATATT 3 cut(s) 780, 1108, 1561
SspMI CTAG 4 cut(s) 156, 330, 713, 791
StyD4I CCNGG 2 cut(s) 120, 1638
StyI CCWWGG 2 cut(s) 468, 1614
TaaI ACNGT 2 cut(s) 279, 1115
TaiI ACGT 2 cut(s) 1233, 1762
TatI WGTACW 3 cut(s) 615, 913, 1059
TauI GCSGC 2 cut(s) 456, 1290
TfiI GAWTC 3 cut(s) 749, 1215, 1654
Tru1I TTAA 9 cut(s) 695, 975, 1007, 1053, 1080, 1628, 1662, 1718, 1819
Tru9I TTAA 9 cut(s) 695, 975, 1007, 1053, 1080, 1628, 1662, 1718, 1819
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 2 cut(s) 412, 928
TseI GCWGC 3 cut(s) 787, 968, 1568
Tsp45I GTSAC 2 cut(s) 412, 928
TspDTI ATGAA 8 cut(s) 66, 572, 843, 983, 1098, 1184, 1228, 1436
TspRI CASTG 1 cut(s) 865
VspI ATTAAT 2 cut(s) 975, 1053
XapI RAATTY 4 cut(s) 13, 579, 990, 1188
XceI RCATGY 4 cut(s) 649, 1353, 1417, 1549
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 4 cut(s) 156, 330, 713, 791
ZrmI AGTACT 2 cut(s) 617, 915
Zsp2I ATGCAT 5 cut(s) 647, 679, 1164, 1351, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.