Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014597

Physical Location & Seq

Genomic Coordinates Forward (+)

17576152 .. 17578305

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGCTTCATGCCTCGCCTCAGCATCTCCATCACTACCATCTCTGTTTCCCACAAATTCTCAACCATTTGCTCTCTAAACACCGCCAGTTTCATCAGACCCAAATCATATCACACCCATCCTGCACTACCCACAATGAATTTCTTGACTTCTTTGAACACCTTCTTCGACAATGTGCTGGACCTGAACAGTGCAAACAAGTTCATTCCCAAATTGTTACCACGGGCACCTGTCAGTCAGCATTCTTGGCCGCCCGGCTTATAGCTGTTTATGCACGTCTTGGCCTCGTGTTGGATGCAAAGAAAGTTTTTGACACCACCACAGTTGAAGGTGCATCAAATGTGCTCTTGTGGAATTCAGTCCTTAGAGCTTATGTCTCTCATGGGTTTTATGAAGAAGCAATCCAACTATATGGCAAAATGCGTAAATTGGGGGTTTGGGGAGATGGGTTTACATTTCCTTTGGTTATTAGGTCCTGTGCATTTATATCTAGGCTTAAGTTATCCAGGAGTGTGCATGGTCATGTTATACATATGGGTTTTCATTATCATCTTCATGTTATCAACGACTTGTTGGGAATGTATGGGAAAATTGGTCGGATGGATTGTGCTCGCCAGTTGTTTAATAGAATGGGTGTGAGAAATTATGTTTCATGGAATACTATGGTCTCAAGCTATGCCTTTAATTATGACTGCGATGGTGCTACTGAGATGTTTAGGAGGATGAAGTTAGAAGGGTTTGTGCCGAACCCTGTGACTTGGACGTCATTATTGTCAAGTCATGCTCGTTGTGGCCGCCATGAAGAAACCTTGGAGTTGTTTGGTAGAATGAGGGCGGTAGGAATTGAAACTACAGCTGAATCGCTTTCTGTGGTGTTATCTGTATGTGCTAATCTGGCTGTGGTTGACAAGGGTAAGATGATTCATGGATATGTTATAAGGGGTGGTTTCCAAGATTACTTGTTTGTGGAAAATGCCCTTATATGTATGTACGGAAAGTGTGGTGATGTAGAAAATGCTCACGAATCATTTTTGGGAATGAAAAGCAAGAACCTTGTCAGTTGGAATGCTTTGATCTCAGCCTATGCTGAATGTGGTTTGTGCTATGAGGCCTTTGCAATATTTTCTCGGCTGAATGAACACCCATTAATGAGACCTAATATCATAAGTTGGAGTGCTGTTATTGGAGGGCTTTCTTCCCAGGGACGAGGAGAGGAGTCTCTAGAACTTTTTCGGCGGATGCAGAATGCGGGAATAATTGGCAATTCTGTCACAATATCCAGTGTTTTATCTGTTTGTGCCGAACTACCAGCATTGAACCTTGGTAGGGAAATTCATTGTCATGTGGTTAGGGCTTTGATAGATGGTAGTATTTTGGTTAGAAATGGCTTGGTTAACATGTACACGAAGTGTGGAAGTTTTAAGGAAGGGCATCTAGTATTTGAGAGTATTGACAATAAGGACTTGATAACGTGGAACACTATGATTGCTGGATACGGGATGCATGGACTTGGTGAGAATGCTCTAAGAGTTTTTTATCAGATGCTTGACTCGGGATTAAAGCCAGACAAAGTAACATTTGTTTCTGTTCTTTCCGCTTGCAGCCATGGCGGGCTAGTCACAGAGGGCTGTCGTCTTTATGATCAGATGATTAGCGTCTATGGTATAGAACCCCAGATGGAGCACTATGCGTGCATGGTTGATCTTCTCGGCCGTGCTGGGTTGTTGCTAGAAGGAAGCAAGATTGTGAAAAACATGCCAATGGAACCCAATGCTTGTGTTTTGGGTGCTCTTCTTAATTCTTGTAGGATGCACAAGAATAGATACATTGCTGAAGAAACTGCCACCGACATTTTCAGCATCAACTCTGAAATGACCGGGAGCTACATGCTGCTGTCAAATATGTATGCTGCTAGCGGGAGATGGGAGGAGTCGGCGAAGGTGAGGATCTCAGCAAAGACAAAGGGTTTGAAGAAAATCCGGGGCCAGAGTTGGATCGAGGTGAAGAATAAGGTTTTTATGTTCTCGGCAGGGGAGACTATGCAAGCAGGGTTGGAGTTGATTCATGGTATCCTTCAAGACTTGGCGCTTCAAATGGAGAGTGAGGGTTATTTACCCAATGAGAGAGGGATTCAACAGAACAGGCTACAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

718

Amino Acids

80.22

Weight (kDa)

8.13

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	113 - 160	6.4e-07	PPR repeat family
PPR	PF01535	117 - 145	6.1e-07	PPR repeat
PPR_2	PF13041	214 - 258	2.6e-07	PPR repeat family
PPR_2	PF13041	248 - 297	4.7e-06	PPR repeat family
PPR	PF01535	251 - 281	3.7e-06	PPR repeat
PPR_2	PF13041	385 - 433	1.1e-07	PPR repeat family
PPR_2	PF13041	487 - 534	2.4e-11	PPR repeat family
PPR	PF01535	489 - 519	1.8e-07	PPR repeat
E_motif	PF20431	604 - 666	1.8e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17630 AT1G17630
fragaria_vesca	FvH4_6g33510
malus_domestica	MD17G1187400.v1.1
prunus_persica	Prupe.3G049200_v2.0.a1
pyrus_communis	pycom17g19640
rosa_laevigata	RLG00000020033
rosa_multiflora	Rmu_co8432359.1_g000001 Rmu_sc0003507.1_g000019 Rmu_sc0024801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101870 Rroxscaffold_2G00101920
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG434000 Rh2CG419700 Rh2DG452100
rosa_wichuraiana	Rw2G035380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	935
AasI	GACNNNNNNGTC	1 cut(s)	760
AatII	GACGTC	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	9 cut(s)	82, 249, 793, 833, 1234, 1247, 1593, 1608, 1914
AclWI	GGATC	2 cut(s)	1952, 2000
AcoI	YGGCCR	3 cut(s)	246, 790, 1708
AcsI	RAATTY	4 cut(s)	54, 137, 352, 1329
AcuI	CTGAAG	1 cut(s)	1851
AcyI	GRCGYC	1 cut(s)	761
AdeI	CACNNNGTG	1 cut(s)	1407
AfaI	GTAC	2 cut(s)	989, 1400
AfiI	CCNNNNNNNGG	2 cut(s)	289, 1324
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	1395
AgsI	TTSAA	8 cut(s)	155, 326, 845, 1315, 1969, 2075, 2090, 2132
AjiI	CACGTC	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	503, 1197
AluBI	AGCT	5 cut(s)	263, 368, 672, 854, 1881
AluI	AGCT	5 cut(s)	263, 368, 672, 854, 1881
Alw21I	GWGCWC	4 cut(s)	345, 610, 1683, 1789
Alw26I	GTCTC	5 cut(s)	379, 670, 1144, 1221, 2027
AlwI	GGATC	2 cut(s)	1952, 2000
Ama87I	CYCGRG	1 cut(s)	1549
AoxI	GGCC	6 cut(s)	246, 280, 790, 1107, 1708, 1981
ApeKI	GCWGC	3 cut(s)	1599, 1888, 1907
ApoI	RAATTY	4 cut(s)	54, 137, 352, 1329
ArsI	GACNNNNNNTTYG	2 cut(s)	1948, 1980
AseI	ATTAAT	1 cut(s)	1145
Asp700I	GAANNNNTTC	2 cut(s)	159, 1227
AspLEI	GCGC	1 cut(s)	2086
AspS9I	GGNCC	3 cut(s)	179, 471, 1981
AsuC2I	CCSGG	3 cut(s)	253, 1876, 1979
AsuHPI	GGTGA	4 cut(s)	1013, 1523, 1951, 2011
AsuNHI	GCTAGC	1 cut(s)	1910
AvaI	CYCGRG	1 cut(s)	1549
AvaII	GGWCC	2 cut(s)	179, 471
BaeGI	GKGCMC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	4 cut(s)	345, 610, 1683, 1789
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	1611, 1875, 1894
BccI	CCATC	9 cut(s)	36, 45, 124, 437, 592, 689, 1355, 1669, 1914
BceAI	ACGGC	1 cut(s)	1695
BciT130I	CCWGG	2 cut(s)	505, 1199
BciVI	GTATCC	2 cut(s)	1484, 2078
BclI	TGATCA	1 cut(s)	1639
BcnI	CCSGG	3 cut(s)	253, 1876, 1979
BcoDI	GTCTC	5 cut(s)	379, 670, 1144, 1221, 2027
BfaI	CTAG	6 cut(s)	489, 1220, 1433, 1613, 1727, 1911
BfmI	CTRYAG	1 cut(s)	849
BfoI	RGCGCY	1 cut(s)	2087
BfrI	CTTAAG	1 cut(s)	494
BfuI	GTATCC	2 cut(s)	1484, 2078
BisI	GCNGC	5 cut(s)	249, 793, 1600, 1889, 1908
BlsI	GCNGC	5 cut(s)	250, 794, 1601, 1890, 1909
Bme1390I	CCNGG	5 cut(s)	253, 505, 1199, 1876, 1979
Bme18I	GGWCC	2 cut(s)	179, 471
BmeT110I	CYCGRG	1 cut(s)	1549
BmgBI	CACGTC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	179, 471, 1981
BmiI	GGNNCC	3 cut(s)	226, 1764, 1982
BmrFI	CCNGG	5 cut(s)	253, 505, 1199, 1876, 1979
BmsI	GCATC	9 cut(s)	31, 283, 341, 1227, 1438, 1488, 1530, 1797, 1866
BmtI	GCTAGC	1 cut(s)	1914
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	3 cut(s)	253, 1876, 1979
BsaHI	GRCGYC	1 cut(s)	761
BsaI	GGTCTC	2 cut(s)	670, 1144
BsaJI	CCNNGG	7 cut(s)	219, 807, 1197, 1198, 1318, 1603, 1978
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 1324
Bse1I	ACTGG	3 cut(s)	85, 613, 1278
Bse3DI	GCAATG	1 cut(s)	1824
BseBI	CCWGG	2 cut(s)	505, 1199
BseDI	CCNNGG	7 cut(s)	219, 807, 1197, 1198, 1318, 1603, 1978
BseGI	GGATG	7 cut(s)	116, 298, 603, 726, 1242, 1503, 1812
BseLI	CCNNNNNNNGG	2 cut(s)	289, 1324
BseMI	GCAATG	1 cut(s)	1824
BseMII	CTCAG	4 cut(s)	32, 696, 1089, 1962
BseNI	ACTGG	3 cut(s)	85, 613, 1278
BseRI	GAGGAG	3 cut(s)	1221, 1226, 1940
BseSI	GKGCMC	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	1708
BseXI	GCAGC	3 cut(s)	1611, 1875, 1894
BseYI	CCCAGC	1 cut(s)	1715
BsgI	GTGCAG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	1711
BshFI	GGCC	6 cut(s)	248, 282, 792, 1109, 1710, 1983
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	1711
BsiHKAI	GWGCWC	4 cut(s)	345, 610, 1683, 1789
BsiHKCI	CYCGRG	1 cut(s)	1549
BsiSI	CCGG	3 cut(s)	253, 1875, 1978
BslFI	GGGAC	1 cut(s)	1215
BslI	CCNNNNNNNGG	2 cut(s)	289, 1324
BsmAI	GTCTC	5 cut(s)	379, 670, 1144, 1221, 2027
BsmFI	GGGAC	1 cut(s)	1215
BsmI	GAATGC	4 cut(s)	239, 1069, 1249, 1522
BsnI	GGCC	6 cut(s)	248, 282, 792, 1109, 1710, 1983
Bso31I	GGTCTC	2 cut(s)	670, 1144
BsoBI	CYCGRG	1 cut(s)	1549
Bsp1286I	GDGCHC	5 cut(s)	227, 345, 610, 1683, 1789
Bsp1407I	TGTACA	1 cut(s)	1398
Bsp143I	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
Bsp19I	CCATGG	1 cut(s)	1603
BspACI	CCGC	9 cut(s)	82, 249, 793, 833, 1234, 1247, 1593, 1608, 1914
BspANI	GGCC	6 cut(s)	248, 282, 792, 1109, 1710, 1983
BspCNI	CTCAG	4 cut(s)	31, 697, 1088, 1961
BspLI	GGNNCC	3 cut(s)	226, 1764, 1982
BspOI	GCTAGC	1 cut(s)	1914
BspPI	GGATC	2 cut(s)	1952, 2000
BspQI	GCTCTTC	1 cut(s)	1794
BspT107I	GGYRCC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	494
BspTNI	GGTCTC	2 cut(s)	670, 1144
BsrDI	GCAATG	1 cut(s)	1824
BsrGI	TGTACA	1 cut(s)	1398
BsrI	ACTGG	3 cut(s)	85, 613, 1278
BssECI	CCNNGG	7 cut(s)	219, 807, 1197, 1198, 1318, 1603, 1978
BssMI	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	3 cut(s)	807, 1318, 1603
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	505, 1199
Bst4CI	ACNGT	2 cut(s)	189, 322
Bst6I	CTCTTC	1 cut(s)	1794
BstACI	GRCGYC	1 cut(s)	761
BstAFI	CTTAAG	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	1398
BstC8I	GCNNGC	6 cut(s)	610, 1597, 1610, 1690, 1912, 2043
BstDEI	CTNAG	6 cut(s)	18, 362, 705, 1075, 1523, 1948
BstDSI	CCRYGG	2 cut(s)	219, 1603
BstF5I	GGATG	7 cut(s)	116, 298, 603, 726, 1242, 1503, 1812
BstH2I	RGCGCY	1 cut(s)	2087
BstHHI	GCGC	1 cut(s)	2086
BstKTI	GATC	5 cut(s)	1074, 1642, 1702, 1947, 1995
BstMAI	GTCTC	5 cut(s)	379, 670, 1144, 1221, 2027
BstMBI	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
BstMCI	CGRYCG	1 cut(s)	1711
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 269, 893, 1605
BstNI	CCWGG	2 cut(s)	505, 1199
BstNSI	RCATGY	3 cut(s)	1399, 1756, 1888
BstSCI	CCNGG	5 cut(s)	251, 503, 1197, 1874, 1977
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	1611, 1875, 1894
BstX2I	RGATCY	1 cut(s)	1944
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	1944
BstZI	CGGCCG	1 cut(s)	1708
BsuI	GTATCC	2 cut(s)	1484, 2078
BsuRI	GGCC	6 cut(s)	248, 282, 792, 1109, 1710, 1983
BtgI	CCRYGG	2 cut(s)	219, 1603
BtgZI	GCGATG	1 cut(s)	708
BtrI	CACGTC	1 cut(s)	275
BtsCI	GGATG	7 cut(s)	116, 298, 603, 726, 1242, 1503, 1812
BtsIMutI	CAGTG	2 cut(s)	194, 1285
Cac8I	GCNNGC	6 cut(s)	610, 1597, 1610, 1690, 1912, 2043
CfoI	GCGC	1 cut(s)	2086
Cfr13I	GGNCC	3 cut(s)	179, 471, 1981
CseI	GACGC	1 cut(s)	1642
Csp6I	GTAC	2 cut(s)	988, 1399
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviQI	GTAC	2 cut(s)	988, 1399
DdeI	CTNAG	6 cut(s)	18, 362, 705, 1075, 1523, 1948
DpnI	GATC	5 cut(s)	1073, 1641, 1701, 1946, 1994
DpnII	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
DraIII	CACNNNGTG	1 cut(s)	1407
DrdI	GACNNNNNNGTC	1 cut(s)	760
DseDI	GACNNNNNNGTC	1 cut(s)	760
EaeI	YGGCCR	3 cut(s)	246, 790, 1708
EagI	CGGCCG	1 cut(s)	1708
Eam1104I	CTCTTC	1 cut(s)	1794
EarI	CTCTTC	1 cut(s)	1794
EciI	GGCGGA	1 cut(s)	1249
EclXI	CGGCCG	1 cut(s)	1708
Eco130I	CCWWGG	3 cut(s)	807, 1318, 1603
Eco147I	AGGCCT	1 cut(s)	1109
Eco31I	GGTCTC	2 cut(s)	670, 1144
Eco47I	GGWCC	2 cut(s)	179, 471
Eco52I	CGGCCG	1 cut(s)	1708
Eco57I	CTGAAG	1 cut(s)	1851
Eco88I	CYCGRG	1 cut(s)	1549
EcoO109I	RGGNCCY	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	503, 1197
EcoT14I	CCWWGG	3 cut(s)	807, 1318, 1603
EcoT22I	ATGCAT	1 cut(s)	1503
ErhI	CCWWGG	3 cut(s)	807, 1318, 1603
FaqI	GGGAC	1 cut(s)	1215
FauI	CCCGC	3 cut(s)	1240, 1601, 1907
FauNDI	CATATG	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	1639
Fnu4HI	GCNGC	5 cut(s)	249, 793, 1600, 1889, 1908
FokI	GGATG	7 cut(s)	103, 305, 610, 733, 1249, 1510, 1819
Fsp4HI	GCNGC	5 cut(s)	249, 793, 1600, 1889, 1908
FspBI	CTAG	6 cut(s)	489, 1220, 1433, 1613, 1727, 1911
GlaI	GCGC	1 cut(s)	2085
GluI	GCNGC	5 cut(s)	249, 793, 1600, 1889, 1908
GsaI	CCCAGC	1 cut(s)	1719
HaeII	RGCGCY	1 cut(s)	2087
HaeIII	GGCC	6 cut(s)	248, 282, 792, 1109, 1710, 1983
HapII	CCGG	3 cut(s)	253, 1875, 1978
HgaI	GACGC	1 cut(s)	1642
HhaI	GCGC	1 cut(s)	2086
Hin1I	GRCGYC	1 cut(s)	761
Hin6I	GCGC	1 cut(s)	2084
HinP1I	GCGC	1 cut(s)	2084
HincII	GTYRAC	2 cut(s)	904, 1393
HindII	GTYRAC	2 cut(s)	904, 1393
HinfI	GANTC	8 cut(s)	857, 919, 1022, 1214, 1547, 1928, 2059, 2128
HpaI	GTTAAC	1 cut(s)	1393
HpaII	CCGG	3 cut(s)	253, 1875, 1978
HphI	GGTGA	4 cut(s)	1013, 1523, 1951, 2011
Hpy166II	GTNNAC	4 cut(s)	450, 904, 1393, 1401
Hpy188I	TCNGA	5 cut(s)	96, 597, 1539, 1644, 1867
Hpy188III	TCNNGA	5 cut(s)	143, 1019, 1220, 1551, 2075
Hpy8I	GTNNAC	4 cut(s)	450, 904, 1393, 1401
HpyAV	CCTTC	7 cut(s)	170, 320, 725, 1418, 1724, 1930, 2081
HpyCH4III	ACNGT	2 cut(s)	189, 322
HpyCH4IV	ACGT	3 cut(s)	274, 761, 1469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 269, 893, 1605
HpyF3I	CTNAG	6 cut(s)	18, 362, 705, 1075, 1523, 1948
HpySE526I	ACGT	3 cut(s)	274, 761, 1469
Hsp92I	GRCGYC	1 cut(s)	761
HspAI	GCGC	1 cut(s)	2084
Ksp22I	TGATCA	1 cut(s)	1639
KspAI	GTTAAC	1 cut(s)	1393
Kzo9I	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
LguI	GCTCTTC	1 cut(s)	1794
LmnI	GCTCC	2 cut(s)	1678, 1878
Lsp1109I	GCAGC	3 cut(s)	1611, 1875, 1894
LweI	GCATC	9 cut(s)	31, 283, 341, 1227, 1438, 1488, 1530, 1797, 1866
MaeI	CTAG	6 cut(s)	489, 1220, 1433, 1613, 1727, 1911
MaeII	ACGT	3 cut(s)	274, 761, 1469
MaeIII	GTNAC	5 cut(s)	214, 751, 1267, 1570, 1615
MalI	GATC	5 cut(s)	1073, 1641, 1701, 1946, 1994
MboI	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
MflI	RGATCY	1 cut(s)	1944
MhlI	GDGCHC	5 cut(s)	227, 345, 610, 1683, 1789
MlyI	GAGTC	3 cut(s)	1223, 1541, 1937
MmeI	TCCRAC	7 cut(s)	270, 427, 575, 1040, 1148, 1970, 2031
Mph1103I	ATGCAT	1 cut(s)	1503
MroXI	GAANNNNTTC	2 cut(s)	159, 1227
MseI	TTAA	8 cut(s)	495, 621, 681, 1145, 1392, 1419, 1556, 1794
MslI	CAYNNNNRTG	5 cut(s)	519, 552, 927, 1338, 1757
MspA1I	CMGCKG	1 cut(s)	854
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	3 cut(s)	253, 1875, 1978
MspR9I	CCNGG	5 cut(s)	253, 505, 1199, 1876, 1979
Mva1269I	GAATGC	4 cut(s)	239, 1069, 1249, 1522
MvaI	CCWGG	2 cut(s)	505, 1199
MwoI	GCNNNNNNNGC	4 cut(s)	245, 269, 893, 1605
NciI	CCSGG	3 cut(s)	253, 1876, 1979
NcoI	CCATGG	1 cut(s)	1603
NdeI	CATATG	1 cut(s)	531
NdeII	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
NheI	GCTAGC	1 cut(s)	1910
NlaIV	GGNNCC	3 cut(s)	226, 1764, 1982
NmeAIII	GCCGAG	3 cut(s)	1105, 1686, 2003
NmuCI	GTSAC	3 cut(s)	751, 1267, 1615
NsiI	ATGCAT	1 cut(s)	1503
NspI	RCATGY	3 cut(s)	1399, 1756, 1888
PasI	CCCWGGG	1 cut(s)	1198
PceI	AGGCCT	1 cut(s)	1109
PciI	ACATGT	1 cut(s)	1395
PciSI	GCTCTTC	1 cut(s)	1794
PctI	GAATGC	4 cut(s)	239, 1069, 1249, 1522
PdmI	GAANNNNTTC	2 cut(s)	159, 1227
PfeI	GAWTC	5 cut(s)	857, 919, 1022, 2059, 2128
PfoI	TCCNGGA	1 cut(s)	503
PkrI	GCNGC	5 cut(s)	250, 794, 1601, 1890, 1909
PleI	GAGTC	3 cut(s)	1222, 1541, 1936
PpsI	GAGTC	3 cut(s)	1222, 1541, 1936
PpuMI	RGGWCCY	1 cut(s)	471
PscI	ACATGT	1 cut(s)	1395
PshBI	ATTAAT	1 cut(s)	1145
PsiI	TTATAA	1 cut(s)	935
Psp5II	RGGWCCY	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	503, 1197
PspFI	CCCAGC	1 cut(s)	1715
PspGI	CCWGG	2 cut(s)	503, 1197
PspN4I	GGNNCC	3 cut(s)	226, 1764, 1982
PspPI	GGNCC	3 cut(s)	179, 471, 1981
PspPPI	RGGWCCY	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	1944
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	2 cut(s)	989, 1400
RsaNI	GTAC	2 cut(s)	988, 1399
RseI	CAYNNNNRTG	5 cut(s)	519, 552, 927, 1338, 1757
SapI	GCTCTTC	1 cut(s)	1794
SaqAI	TTAA	8 cut(s)	495, 621, 681, 1145, 1392, 1419, 1556, 1794
SatI	GCNGC	5 cut(s)	249, 793, 1600, 1889, 1908
Sau3AI	GATC	5 cut(s)	1071, 1639, 1699, 1944, 1992
Sau96I	GGNCC	3 cut(s)	179, 471, 1981
SchI	GAGTC	3 cut(s)	1223, 1541, 1937
ScrFI	CCNGG	5 cut(s)	253, 505, 1199, 1876, 1979
SduI	GDGCHC	5 cut(s)	227, 345, 610, 1683, 1789
SfaNI	GCATC	9 cut(s)	31, 283, 341, 1227, 1438, 1488, 1530, 1797, 1866
SfcI	CTRYAG	1 cut(s)	849
SinI	GGWCC	2 cut(s)	179, 471
SmiMI	CAYNNNNRTG	5 cut(s)	519, 552, 927, 1338, 1757
SmlI	CTYRAG	2 cut(s)	494, 667
SmoI	CTYRAG	2 cut(s)	494, 667
SseBI	AGGCCT	1 cut(s)	1109
SsiI	CCGC	9 cut(s)	82, 249, 793, 833, 1234, 1247, 1593, 1608, 1914
SspI	AATATT	1 cut(s)	1119
SspMI	CTAG	6 cut(s)	489, 1220, 1433, 1613, 1727, 1911
StuI	AGGCCT	1 cut(s)	1109
StyD4I	CCNGG	5 cut(s)	251, 503, 1197, 1874, 1977
StyI	CCWWGG	3 cut(s)	807, 1318, 1603
TaaI	ACNGT	2 cut(s)	189, 322
TaiI	ACGT	3 cut(s)	277, 764, 1472
TaqI	TCGA	2 cut(s)	166, 1995
TatI	WGTACW	1 cut(s)	1398
TauI	GCSGC	2 cut(s)	251, 795
TfiI	GAWTC	5 cut(s)	857, 919, 1022, 2059, 2128
Tru1I	TTAA	8 cut(s)	495, 621, 681, 1145, 1392, 1419, 1556, 1794
Tru9I	TTAA	8 cut(s)	495, 621, 681, 1145, 1392, 1419, 1556, 1794
TscAI	CASTG	2 cut(s)	194, 1285
TseFI	GTSAC	3 cut(s)	751, 1267, 1615
TseI	GCWGC	3 cut(s)	1599, 1888, 1907
Tsp45I	GTSAC	3 cut(s)	751, 1267, 1615
TspGWI	ACGGA	1 cut(s)	1005
TspRI	CASTG	2 cut(s)	194, 1285
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	2 cut(s)	179, 471
VspI	ATTAAT	1 cut(s)	1145
XapI	RAATTY	4 cut(s)	54, 137, 352, 1329
XbaI	TCTAGA	1 cut(s)	1219
XceI	RCATGY	3 cut(s)	1399, 1756, 1888
XmnI	GAANNNNTTC	2 cut(s)	159, 1227
XspI	CTAG	6 cut(s)	489, 1220, 1433, 1613, 1727, 1911
ZraI	GACGTC	1 cut(s)	762
Zsp2I	ATGCAT	1 cut(s)	1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.