Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014597

Physical Location & Seq

Genomic Coordinates Reverse (-)

23788650 .. 23794051

Gene Structure 5402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGGAGGAGGAGTTGGATCCAGTGGAGCTCGTGATACCTTTCGATGGGTTGGAACCATCTTTGCCTTAGAAAATGTGTCTCATGGGTTTTGTGAAAAAGCACTCAAACTATATGATATAATGCGAAGACTTGGAGTTTGGGCTGATGGGTTTGCTCTTCCCCTGGTTATTAGGGCCTGTGCATTTATGGTAGGTTTAGGCTATGCAAGAATGTACAGTCATGTTTTACAAATGGGTTTTCAAAATCATCTCCATGTTGTCAATGAGTTGATGGGGATGTATGGGAAACTTGGTAAAATGGACTGTGCCCGCCATCTGTTTGATAAAATGAGCGGGAGAAGCTATGTTTCTTGGAATACTCTGTTAGAGGAATTGAGACAACTGCAGAAGCGCTTGCTGTGGTGTACGTTATCTGTATGTGCTGATGTGGCTTTGGTTGACAAGGGTAAGAGGAGTCATGGATATGTTGTTAGAGGTGGTTTCGAAGAGTACTTGTTTGTGAAAAATGCACTAATATGCATGTATGGAAAATGTGGAGATGTAGAAAATGCATACAAATTATTTTTGGTGATGGAAAGCAAAAACCTAGTGAGTTGGAATGCTTTGATGTCATCATATGCTGAATCTGGTTTGTGTGATGAGGCTTTTGCAATATTTTCCCAGCTAGATGCTCATCCAGTTATAACACCTAATATCATAAGTTGGAGTGCTGTTATTCAAGGGTTCTCGTCCACTGGACAAGGAGAGAAGTCTCTGGAACTCTTTCGGCAGATGCAGAGAGCAGGAGTACTGCCCAATTCAGGGAATACCATGCAAGCAGGCGTGGAGTTAATTCATGGTATCCTTTATGGCTTGGCACTTCAAATGGAAAGTGAGGGATATGTACCTAATAAGGAAGTCATTCAAGAGAATATTGACAAAGAACTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

319

Amino Acids

35.55

Weight (kDa)

6.09

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	239 - 276	3.2e-07	PPR repeat family
PPR	PF01535	242 - 272	2.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17630 AT1G17630
fragaria_vesca	FvH4_6g33510
malus_domestica	MD17G1187400.v1.1
prunus_persica	Prupe.3G049200_v2.0.a1
pyrus_communis	pycom17g19640
rosa_laevigata	RLG00000020033
rosa_multiflora	Rmu_co8432359.1_g000001 Rmu_sc0003507.1_g000019 Rmu_sc0024801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101870 Rroxscaffold_2G00101920
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG434000 Rh2CG419700 Rh2DG452100
rosa_wichuraiana	Rw2G035380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AccBSI	CCGCTC	1 cut(s)	360
AciI	CCGC	2 cut(s)	337, 360
AclWI	GGATC	2 cut(s)	39, 52
AfaI	GTAC	5 cut(s)	242, 433, 518, 816, 912
AfeI	AGCGCT	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	72, 827, 828
AgsI	TTSAA	5 cut(s)	29, 269, 746, 890, 932
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	56, 369, 691
AluI	AGCT	3 cut(s)	56, 369, 691
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	3 cut(s)	111, 397, 783
AlwI	GGATC	2 cut(s)	39, 52
Aor51HI	AGCGCT	1 cut(s)	419
AoxI	GGCC	1 cut(s)	201
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	2 cut(s)	789, 927
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	607
AsuII	TTCGAA	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	6 cut(s)	66, 92, 167, 292, 348, 592
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	878
BcoDI	GTCTC	3 cut(s)	111, 397, 783
BfaI	CTAG	2 cut(s)	614, 692
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	878
BmcAI	AGTACT	2 cut(s)	518, 816
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	46, 82
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	685, 789
BpiI	GAAGAC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 827, 828
Bse1I	ACTGG	4 cut(s)	48, 704, 766, 957
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	309, 700
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	3 cut(s)	72, 827, 828
BseNI	ACTGG	4 cut(s)	48, 704, 766, 957
BseRI	GAGGAG	3 cut(s)	48, 51, 493
BseSI	GKGCMC	1 cut(s)	337
BseYI	CCCAGC	1 cut(s)	687
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	72, 827, 828
BsmAI	GTCTC	3 cut(s)	111, 397, 783
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	58, 337
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	337, 360
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	2 cut(s)	46, 82
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	2 cut(s)	39, 52
BspQI	GCTCTTC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	510
BsrBI	CCGCTC	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	4 cut(s)	48, 704, 766, 957
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	245, 332
Bst6I	CTCTTC	2 cut(s)	189, 507
BstAUI	TGTACA	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	4 cut(s)	337, 422, 843, 847
BstDEI	CTNAG	2 cut(s)	12, 94
BstF5I	GGATG	2 cut(s)	309, 700
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	3 cut(s)	111, 397, 783
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 455
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	309, 700
BtsIMutI	CAGTG	2 cut(s)	55, 759
Cac8I	GCNNGC	4 cut(s)	337, 422, 843, 847
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	241, 432, 517, 815, 911
CviAII	CATG	8 cut(s)	19, 110, 248, 281, 485, 547, 838, 863
CviJI	RGCY	9 cut(s)	56, 170, 203, 228, 369, 458, 671, 691, 879
CviKI_1	RGCY	9 cut(s)	56, 170, 203, 228, 369, 458, 671, 691, 879
CviQI	GTAC	5 cut(s)	241, 432, 517, 815, 911
DdeI	CTNAG	2 cut(s)	12, 94
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	189, 507
EarI	CTCTTC	2 cut(s)	189, 507
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	189
EcoT22I	ATGCAT	2 cut(s)	548, 580
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	8 cut(s)	22, 113, 251, 284, 488, 550, 841, 866
FatI	CATG	8 cut(s)	18, 109, 247, 280, 484, 546, 837, 862
FauI	CCCGC	2 cut(s)	344, 353
FauNDI	CATATG	1 cut(s)	643
FokI	GGATG	2 cut(s)	316, 687
FriOI	GRGCYC	1 cut(s)	58
FspBI	CTAG	2 cut(s)	614, 692
GlaI	GCGC	1 cut(s)	419
GsaI	CCCAGC	1 cut(s)	691
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	8 cut(s)	22, 113, 251, 284, 488, 550, 841, 866
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	481, 650
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	3 cut(s)	432, 466, 759
Hpy188III	TCNNGA	3 cut(s)	59, 782, 932
Hpy8I	GTNNAC	3 cut(s)	432, 466, 759
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	245, 332
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	9 cut(s)	209, 233, 412, 536, 546, 578, 677, 802, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 455
HpyF3I	CTNAG	2 cut(s)	12, 94
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	8 cut(s)	22, 113, 251, 284, 488, 550, 841, 866
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	44
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	53
LweI	GCATC	2 cut(s)	685, 789
MaeI	CTAG	2 cut(s)	614, 692
MaeII	ACGT	1 cut(s)	434
MalI	GATC	1 cut(s)	46
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	165, 176, 524
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	58, 337
MluCI	AATT	4 cut(s)	398, 584, 823, 858
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	4 cut(s)	22, 58, 602, 710
MnlI	CCTC	7 cut(s)	26, 29, 388, 471, 494, 661, 895
Mph1103I	ATGCAT	2 cut(s)	548, 580
MroXI	GAANNNNTTC	2 cut(s)	789, 927
MseI	TTAA	1 cut(s)	857
MslI	CAYNNNNRTG	3 cut(s)	279, 489, 541
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	366, 455
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	8 cut(s)	22, 113, 251, 284, 488, 550, 841, 866
NlaIV	GGNNCC	2 cut(s)	46, 82
NsiI	ATGCAT	2 cut(s)	548, 580
NspI	RCATGY	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	631
PdmI	GAANNNNTTC	2 cut(s)	789, 927
PfeI	GAWTC	1 cut(s)	650
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	710
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	46, 82
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	5 cut(s)	242, 433, 518, 816, 912
RsaNI	GTAC	5 cut(s)	241, 432, 517, 815, 911
RseI	CAYNNNNRTG	3 cut(s)	279, 489, 541
SacI	GAGCTC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	857
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	201
ScaI	AGTACT	2 cut(s)	518, 816
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	58, 337
SfaNI	GCATC	2 cut(s)	685, 789
SfcI	CTRYAG	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	510
SmiMI	CAYNNNNRTG	3 cut(s)	279, 489, 541
Sse9I	AATT	4 cut(s)	398, 584, 823, 858
SsiI	CCGC	2 cut(s)	337, 360
SspI	AATATT	2 cut(s)	681, 940
SspMI	CTAG	2 cut(s)	614, 692
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	245, 332
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	70, 510
TasI	AATT	4 cut(s)	398, 584, 823, 858
TatI	WGTACW	3 cut(s)	240, 516, 814
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	857
Tru9I	TTAA	1 cut(s)	857
TscAI	CASTG	2 cut(s)	55, 766
TspDTI	ATGAA	2 cut(s)	7, 851
TspRI	CASTG	2 cut(s)	55, 766
XceI	RCATGY	1 cut(s)	550
XmnI	GAANNNNTTC	2 cut(s)	789, 927
XspI	CTAG	2 cut(s)	614, 692
ZrmI	AGTACT	2 cut(s)	518, 816
Zsp2I	ATGCAT	2 cut(s)	548, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.