Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008087

Physical Location & Seq

Genomic Coordinates Reverse (-)

6145926 .. 6148940

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAGAGTTTCGCCGGCGGCAACACTCTCAGTCTCTTTGACTACTCCACTACCTATAACTTTAACCAAAGCTCGTTTCTCCGGCGAACCATTGCGACTCAAACAATATGTTTTGAGTAATCAGATTTGCTCCCGACCAAAACATCTCCTCTCAGAGTTTAAACCCACCAGAAGATGGACCTTCTCCTGCAAATGCCGTAACAGAGGAAGAAATGGTTACGCGAAATTCGATGACGAAGGAGAAGATTTCATTGTTGTTAACTTCTATCGGTTTGTATCAATCGGAGATCCTGAGGCTGAGATTGAGAAGCACCTCTCATTCTTAAAGGATTTGAATATACGAGGTCGAATATATCTCAATGAACAAGGAATCAACGCGCAGTACAGTGGACCATCTAAAGATGCTCTTGCATATGTTGAATGGTTAAAAGGAGATGATAGATTCTCGGATTTGCTTGTCCAGATGTCTCCCGCTATGAATAGGCATGCATTCCCTAAGTTGAAGCTACAGAACAAACCCTCCTTATATGAGGGAGGAATTTCACACCTTCCCCTACTTGATCCACCCATGCGAGCAAAACCCTTAGAGCCATCTGAATGGAAAAGGAAACTGAAAGACTTAACGGATGATGATGAAGCCTCACCTTCAAATAGTGGCAAAAGTTACATATTATTGGATGTCAGAAATGGTTATGAGTGGGATGTTGGTCACTTTCGTGGGGCACATAGACCTGAAGTTGATTGCTTTCGGAACACTTCTTTTGGGCTATCTGATGAAAAGGAAGCCCCTTCAGACCCTTTGATAAATGTTGACAAGGAAAAGACAGATATACTGATGTATTGTACTGGAGGTATACGTTGTGATGTGTATTCAACAGTTTTGAGACAGCGGGGTTTCAAGAACCTGTATACATTGAAGGGTGGAGTTTCCCATTACCTTAAAGAAGAAGGCACCGCCGAATGGGTTGGAAATCTGTTTGTGTTTGACTCTCGTCTTTCTCTCCCACCAGCTGCCTACAATGACAACGTCGTGGATAAAGCCGTAGGTGATAACGTCGTGGATGAAGCCGGAAGAACTCCACAAACGCCCGTGGATACAAGTTTTGCAAGATGCTATCTTTGTAATTCCCAAGTTCAGGAACTAAGACATCGGAACTGTGCTAACCTTGACTGCAATCGGCTTTTCTTATGCTGTGCAGAATGTGTTGTCGACTTGAAGGGTTGTTGCTGTTCAGACTGCATTAGTGCTCCCAGACTTAGACCGGTCTTGCATGGAGTAAAGAGATATGAAAAATGGCATGTATATCGCGATTCAGAAGAGCAAAATGCGCCATTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rhodanese_C

Protein Analysis

446

Amino Acids

50.62

Weight (kDa)

7.8

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0176_N	PF17773	84 - 173	2.1e-18	UPF0176 acylphosphatase like domain
Rhodanese	PF00581	221 - 315	5.8e-09	Rhodanese-like domain
Rhodanese_C	PF12368	325 - 415	6e-14	Rhodanase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17850 AT1G17850
fragaria_vesca	FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210
malus_domestica	MD06G1237700.v1.1 MD14G1244500.v1.1
prunus_persica	Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1
pyrus_communis	pycom14g20560
rosa_chinensis	RchiOBHm_Chr7g0177381
rosa_laevigata	RLG00000005541
rosa_multiflora	Rmu_sc0005310.1_g000003 Rmu_sc0005545.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275900
rosa_rugosa	Rorug06G0405500
rosa_samantha	Rh7AG005100 Rh7BG005100 Rh7CG005200 Rh7DG004900
rosa_wichuraiana	Rw7G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	950
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccI	GTMKAC	3 cut(s)	853, 908, 1209
AccII	CGCG	3 cut(s)	221, 377, 1308
AciI	CCGC	4 cut(s)	17, 471, 889, 954
AclWI	GGATC	2 cut(s)	281, 554
AcsI	RAATTY	2 cut(s)	224, 537
AcuI	CTGAAG	2 cut(s)	753, 774
AfaI	GTAC	2 cut(s)	383, 844
AfiI	CCNNNNNNNGG	3 cut(s)	174, 960, 1135
AgeI	ACCGGT	1 cut(s)	1261
AgsI	TTSAA	8 cut(s)	334, 419, 502, 648, 873, 898, 916, 1216
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AleI	CACNNNNGTG	1 cut(s)	714
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	3 cut(s)	71, 505, 1010
AluI	AGCT	3 cut(s)	71, 505, 1010
Alw21I	GWGCWC	1 cut(s)	1249
Alw26I	GTCTC	3 cut(s)	37, 471, 877
AlwI	GGATC	2 cut(s)	281, 554
ApeKI	GCWGC	1 cut(s)	1010
ApoI	RAATTY	2 cut(s)	224, 537
AsiGI	ACCGGT	1 cut(s)	1261
AspLEI	GCGC	2 cut(s)	379, 1330
AspS9I	GGNCC	2 cut(s)	177, 389
AsuHPI	GGTGA	2 cut(s)	633, 1058
AvaII	GGWCC	2 cut(s)	177, 389
AxyI	CCTNAGG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	950
Bbv12I	GWGCWC	1 cut(s)	1249
BbvI	GCAGC	1 cut(s)	997
BccI	CCATC	3 cut(s)	168, 400, 598
BceAI	ACGGC	2 cut(s)	180, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	1286, 1320
BciVI	GTATCC	1 cut(s)	1087
BcoDI	GTCTC	3 cut(s)	37, 471, 877
BfmI	CTRYAG	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	1087
BisI	GCNGC	2 cut(s)	18, 1011
BlsI	GCNGC	2 cut(s)	19, 1012
Bme18I	GGWCC	2 cut(s)	177, 389
BmgT120I	GGNCC	2 cut(s)	177, 389
BmiI	GGNNCC	1 cut(s)	952
BmsI	GCATC	2 cut(s)	391, 1100
BoxI	GACNNNNGTC	1 cut(s)	990
BpmI	CTGGAG	1 cut(s)	867
BsaJI	CCNNGG	1 cut(s)	1089
BsaWI	WCCGGW	1 cut(s)	1261
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 960, 1135
Bse118I	RCCGGY	2 cut(s)	13, 1261
Bse1I	ACTGG	1 cut(s)	850
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	1089
BseGI	GGATG	4 cut(s)	631, 682, 706, 1066
BseLI	CCNNNNNNNGG	3 cut(s)	174, 960, 1135
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	4 cut(s)	42, 165, 282, 288
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	1 cut(s)	997
BsgI	GTGCAG	1 cut(s)	1215
Bsh1236I	CGCG	3 cut(s)	221, 377, 1308
BshNI	GGYRCC	1 cut(s)	950
BshTI	ACCGGT	1 cut(s)	1261
BsiHKAI	GWGCWC	1 cut(s)	1249
BsiSI	CCGG	4 cut(s)	14, 81, 1068, 1262
BslI	CCNNNNNNNGG	3 cut(s)	174, 960, 1135
BsmAI	GTCTC	3 cut(s)	37, 471, 877
BsmI	GAATGC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	724, 1249
Bsp143I	GATC	2 cut(s)	286, 559
Bsp68I	TCGCGA	1 cut(s)	1308
BspACI	CCGC	4 cut(s)	17, 471, 889, 954
BspCNI	CTCAG	4 cut(s)	41, 164, 283, 289
BspFNI	CGCG	3 cut(s)	221, 377, 1308
BspLI	GGNNCC	1 cut(s)	952
BspPI	GGATC	2 cut(s)	281, 554
BspQI	GCTCTTC	1 cut(s)	1311
BspT107I	GGYRCC	1 cut(s)	950
BsrDI	GCAATG	1 cut(s)	89
BsrFI	RCCGGY	2 cut(s)	13, 1261
BsrI	ACTGG	1 cut(s)	850
BssAI	RCCGGY	2 cut(s)	13, 1261
BssECI	CCNNGG	1 cut(s)	1089
BssMI	GATC	2 cut(s)	286, 559
BssNAI	GTATAC	2 cut(s)	854, 909
Bst1107I	GTATAC	2 cut(s)	854, 909
Bst4CI	ACNGT	3 cut(s)	386, 877, 1157
Bst6I	CTCTTC	1 cut(s)	1311
BstC8I	GCNNGC	3 cut(s)	15, 486, 573
BstDEI	CTNAG	8 cut(s)	28, 151, 291, 297, 495, 583, 1142, 1256
BstDSI	CCRYGG	1 cut(s)	1089
BstF5I	GGATG	4 cut(s)	631, 682, 706, 1066
BstFNI	CGCG	3 cut(s)	221, 377, 1308
BstHHI	GCGC	2 cut(s)	379, 1330
BstKTI	GATC	2 cut(s)	289, 562
BstMAI	GTCTC	3 cut(s)	37, 471, 877
BstMBI	GATC	2 cut(s)	286, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	1327
BstNSI	RCATGY	2 cut(s)	488, 1301
BstPAI	GACNNNNGTC	1 cut(s)	990
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	724
BstUI	CGCG	3 cut(s)	221, 377, 1308
BstV1I	GCAGC	1 cut(s)	997
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	286
BstZ17I	GTATAC	2 cut(s)	854, 909
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	1087
BtgI	CCRYGG	1 cut(s)	1089
BtsCI	GGATG	4 cut(s)	631, 682, 706, 1066
BtsIMutI	CAGTG	1 cut(s)	391
BtuMI	TCGCGA	1 cut(s)	1308
Cac8I	GCNNGC	3 cut(s)	15, 486, 573
CfoI	GCGC	2 cut(s)	379, 1330
Cfr10I	RCCGGY	2 cut(s)	13, 1261
Cfr13I	GGNCC	2 cut(s)	177, 389
Csp6I	GTAC	2 cut(s)	382, 843
CspAI	ACCGGT	1 cut(s)	1261
CviAII	CATG	4 cut(s)	485, 568, 1271, 1298
CviQI	GTAC	2 cut(s)	382, 843
DdeI	CTNAG	8 cut(s)	28, 151, 291, 297, 495, 583, 1142, 1256
DpnI	GATC	2 cut(s)	288, 561
DpnII	GATC	2 cut(s)	286, 559
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	1311
EarI	CTCTTC	1 cut(s)	1311
Eco47I	GGWCC	2 cut(s)	177, 389
Eco57I	CTGAAG	2 cut(s)	753, 774
Eco81I	CCTNAGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	490
FaeI	CATG	4 cut(s)	488, 571, 1274, 1301
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	4 cut(s)	484, 567, 1270, 1297
FauI	CCCGC	2 cut(s)	478, 882
FauNDI	CATATG	1 cut(s)	412
FblI	GTMKAC	3 cut(s)	853, 908, 1209
Fnu4HI	GCNGC	2 cut(s)	18, 1011
FokI	GGATG	4 cut(s)	638, 689, 713, 1073
Fsp4HI	GCNGC	2 cut(s)	18, 1011
GlaI	GCGC	2 cut(s)	378, 1329
GluI	GCNGC	2 cut(s)	18, 1011
GsuI	CTGGAG	1 cut(s)	867
HapII	CCGG	4 cut(s)	14, 81, 1068, 1262
HhaI	GCGC	2 cut(s)	379, 1330
Hin1II	CATG	4 cut(s)	488, 571, 1274, 1301
Hin6I	GCGC	2 cut(s)	377, 1328
HinP1I	GCGC	2 cut(s)	377, 1328
HincII	GTYRAC	3 cut(s)	259, 811, 1210
HindII	GTYRAC	3 cut(s)	259, 811, 1210
HinfI	GANTC	5 cut(s)	96, 369, 441, 986, 1310
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	4 cut(s)	14, 81, 1068, 1262
HphI	GGTGA	2 cut(s)	633, 1058
Hpy166II	GTNNAC	6 cut(s)	259, 389, 811, 854, 909, 1210
Hpy188III	TCNNGA	6 cut(s)	132, 290, 460, 898, 1136, 1307
Hpy8I	GTNNAC	6 cut(s)	259, 389, 811, 854, 909, 1210
Hpy99I	CGWCG	2 cut(s)	1031, 1058
HpyAV	CCTTC	8 cut(s)	190, 230, 557, 654, 798, 910, 941, 1210
HpyCH4III	ACNGT	3 cut(s)	386, 877, 1157
HpyCH4IV	ACGT	3 cut(s)	856, 1026, 1053
HpyCH4V	TGCA	8 cut(s)	189, 410, 488, 1106, 1173, 1196, 1239, 1270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1327
HpyF3I	CTNAG	8 cut(s)	28, 151, 291, 297, 495, 583, 1142, 1256
HpySE526I	ACGT	3 cut(s)	856, 1026, 1053
Hsp92II	CATG	4 cut(s)	488, 571, 1274, 1301
HspAI	GCGC	2 cut(s)	377, 1328
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	286, 559
LguI	GCTCTTC	1 cut(s)	1311
LmnI	GCTCC	2 cut(s)	134, 1252
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	2 cut(s)	391, 1100
MaeII	ACGT	3 cut(s)	856, 1026, 1053
MaeIII	GTNAC	4 cut(s)	197, 215, 662, 707
MalI	GATC	2 cut(s)	288, 561
MboI	GATC	2 cut(s)	286, 559
MboII	GAAGA	6 cut(s)	183, 219, 254, 956, 1083, 1328
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	724, 1249
MluCI	AATT	3 cut(s)	224, 537, 1123
MlyI	GAGTC	2 cut(s)	90, 980
MmeI	TCCRAC	1 cut(s)	946
Mph1103I	ATGCAT	1 cut(s)	490
MreI	CGCCGGCG	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	7 cut(s)	62, 159, 258, 323, 425, 620, 939
MslI	CAYNNNNRTG	2 cut(s)	595, 714
MspA1I	CMGCKG	2 cut(s)	889, 1010
MspI	CCGG	4 cut(s)	14, 81, 1068, 1262
MssI	GTTTAAAC	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	488
MvnI	CGCG	3 cut(s)	221, 377, 1308
MwoI	GCNNNNNNNGC	1 cut(s)	1327
NaeI	GCCGGC	1 cut(s)	15
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	2 cut(s)	286, 559
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	488, 571, 1274, 1301
NlaIV	GGNNCC	1 cut(s)	952
NmuCI	GTSAC	1 cut(s)	707
NruI	TCGCGA	1 cut(s)	1308
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	2 cut(s)	488, 1301
OliI	CACNNNNGTG	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	1311
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	488
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	369, 441, 1310
PflFI	GACNNNGTC	1 cut(s)	1025
PflMI	CCANNNNNTGG	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	1261
PkrI	GCNGC	2 cut(s)	19, 1012
PleI	GAGTC	2 cut(s)	90, 980
PmeI	GTTTAAAC	1 cut(s)	160
PpsI	GAGTC	2 cut(s)	90, 980
PshAI	GACNNNNGTC	1 cut(s)	990
PspN4I	GGNNCC	1 cut(s)	952
PspPI	GGNCC	2 cut(s)	177, 389
PsuI	RGATCY	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	1010
RruI	TCGCGA	1 cut(s)	1308
RsaI	GTAC	2 cut(s)	383, 844
RsaNI	GTAC	2 cut(s)	382, 843
RseI	CAYNNNNRTG	2 cut(s)	595, 714
SalI	GTCGAC	1 cut(s)	1208
SapI	GCTCTTC	1 cut(s)	1311
SaqAI	TTAA	7 cut(s)	62, 159, 258, 323, 425, 620, 939
SatI	GCNGC	2 cut(s)	18, 1011
Sau3AI	GATC	2 cut(s)	286, 559
Sau96I	GGNCC	2 cut(s)	177, 389
SchI	GAGTC	2 cut(s)	90, 980
SduI	GDGCHC	2 cut(s)	724, 1249
SfaNI	GCATC	2 cut(s)	391, 1100
SfcI	CTRYAG	1 cut(s)	506
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	177, 389
SmiMI	CAYNNNNRTG	2 cut(s)	595, 714
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	3 cut(s)	224, 537, 1123
SsiI	CCGC	4 cut(s)	17, 471, 889, 954
TaaI	ACNGT	3 cut(s)	386, 877, 1157
TaiI	ACGT	3 cut(s)	859, 1029, 1056
TaqI	TCGA	3 cut(s)	228, 346, 1209
TasI	AATT	3 cut(s)	224, 537, 1123
TatI	WGTACW	2 cut(s)	381, 842
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	369, 441, 1310
Tru1I	TTAA	7 cut(s)	62, 159, 258, 323, 425, 620, 939
Tru9I	TTAA	7 cut(s)	62, 159, 258, 323, 425, 620, 939
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	1 cut(s)	1010
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	7 cut(s)	238, 375, 491, 648, 789, 1077, 1302
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	1025
Van91I	CCANNNNNTGG	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	177, 389
XapI	RAATTY	2 cut(s)	224, 537
XceI	RCATGY	2 cut(s)	488, 1301
XmiI	GTMKAC	3 cut(s)	853, 908, 1209
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.