Rmu_sc0005310.1_g000003

Rhodanese-like domain-containing protein 8

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005310.1
Physical Location & Seq
Reverse (-)
19440 .. 21890
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005310.1_g000003.1.cds

Sequence Viewer

Length: 1302 bp
atgagagggtgtttcccggcgccggcggtcatctccggtgcggcgagctccgcactcactcaaattgtttggggaagaagaaaagatccgttgcttcaattctcagtctggtcctcaacaactgcaacttcgtcttgcttagtctataatagcaataagcatgctgagcggagacgaaggcggtggtggctttcgttatcagaagcaacaagtagagggagaggtgtgagcgttggactacagcaacaatgcgagtgtgaaagtgaaagcagagaagataatgaatgggtggtggtcaatttttaccagtttgtgttgatcaaagacgcggaggcagaagtggccaagcatctcaatttcttgaagggtgggccgtcaagagacgcgcttgcttatgttgaatgggtgagagaggatgagagatttgccaactgcttggttcagatttctgcagcaccaactgggcatgcctttccaaaactcaagctgcggtataagccttcactggttcagttagaaggaggtatcagtcatcttcctttgctggacccttcaatgcgagctacacctctagcaccatccgagtggaggaaaagattagagacagccaacggcagcactactgctgatgcatcaactcaaaatcctagaccaaactatattctattggatgttagaaacggttatgagtgggatattggtcatttcagtggggctcgacggccagatgtggactgcttcaggagcacttcgtttgggctatgccaaccagaggtcattgctgcagatccgttagccaacgttgataaagaaacagatatattgatgtattgcactggaggtatccgttgtgatgtatattccacaatcctaagacaacagggctttcaaaatttatacaccttaaaggggggtgtctctcattacctaaaaaatgaaggtcctgtccagtgggttgggaatttgtttgtgtttgactcccgtctttctctcccacctgctacctacaagcctgaagccataactgaaccaaacagagttgaagtttcagagaacaatacatttgccagatgctatatatgtggtttagaagtctgcgagttacggcatcgaaactgcgcaaatcttgactgcaacctactttatctatgctgtatgaactgtgttgagaatttaagaggatgttgctgttcaaagtgcacaactgcttctcgacttagacctgttcttcagggtccccatagatatgaaaaatggcacacgtaccgggatttgatatcacaaagcaagtcgacagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

433

Amino Acids

48.72

Weight (kDa)

8.41

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1006
Acc16I TGCGCA 1 cut(s) 1120
Acc36I ACCTGC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 1292
AccII CGCG 2 cut(s) 329, 386
AciI CCGC 7 cut(s) 26, 41, 51, 169, 181, 329, 490
AclI AACGTT 1 cut(s) 801
AclWI GGATC 2 cut(s) 80, 782
AcoI YGGCCR 2 cut(s) 342, 722
AcsI RAATTY 3 cut(s) 892, 961, 1171
AcuI CTGAAG 3 cut(s) 724, 1035, 1214
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 1265
AfiI CCNNNNNNNGG 4 cut(s) 22, 588, 772, 909
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 7 cut(s) 98, 364, 401, 555, 890, 1043, 1194
AluBI AGCT 4 cut(s) 48, 487, 563, 1298
AluI AGCT 4 cut(s) 48, 487, 563, 1298
Alw21I GWGCWC 3 cut(s) 50, 749, 1202
Alw26I GTCTC 4 cut(s) 166, 375, 596, 922
Alw44I GTGCAC 1 cut(s) 1198
AlwI GGATC 2 cut(s) 80, 782
AoxI GGCC 3 cut(s) 342, 371, 722
ApaLI GTGCAC 1 cut(s) 1198
ApeKI GCWGC 4 cut(s) 452, 487, 615, 782
ApoI RAATTY 3 cut(s) 892, 961, 1171
AspLEI GCGC 3 cut(s) 22, 388, 1121
AspS9I GGNCC 5 cut(s) 111, 371, 547, 941, 1235
AsuC2I CCSGG 2 cut(s) 17, 1268
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 4 cut(s) 111, 547, 941, 1235
BaeGI GKGCMC 1 cut(s) 1202
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 2 cut(s) 50, 718
Bbv12I GWGCWC 3 cut(s) 50, 749, 1202
BbvI GCAGC 4 cut(s) 464, 474, 627, 769
BccI CCATC 1 cut(s) 586
BceAI ACGGC 4 cut(s) 358, 628, 737, 1121
BciVI GTATCC 1 cut(s) 854
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 2 cut(s) 17, 1268
BcoDI GTCTC 4 cut(s) 166, 375, 596, 922
BfaI CTAG 2 cut(s) 572, 648
BfmI CTRYAG 3 cut(s) 239, 450, 783
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 854
BisI GCNGC 5 cut(s) 42, 453, 488, 616, 783
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 5 cut(s) 43, 454, 489, 617, 784
Bme1390I CCNGG 2 cut(s) 17, 1268
Bme18I GGWCC 4 cut(s) 111, 547, 941, 1235
BmgT120I GGNCC 5 cut(s) 111, 371, 547, 941, 1235
BmiI GGNNCC 4 cut(s) 21, 549, 1236, 1237
BmrFI CCNGG 2 cut(s) 17, 1268
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 5 cut(s) 358, 619, 641, 1061, 1117
BmuI ACTGGG 1 cut(s) 471
BoxI GACNNNNGTC 1 cut(s) 981
BpmI CTGGAG 1 cut(s) 858
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 17, 1268
BsaAI YACGTR 1 cut(s) 1263
BsaHI GRCGYC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 588, 772, 909
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 5 cut(s) 307, 466, 510, 841, 949
Bse3DI GCAATG 1 cut(s) 777
BseGI GGATG 4 cut(s) 421, 578, 676, 1187
BseLI CCNNNNNNNGG 4 cut(s) 22, 588, 772, 909
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 117, 156
BseNI ACTGG 5 cut(s) 307, 466, 510, 841, 949
BseSI GKGCMC 1 cut(s) 1202
BseXI GCAGC 4 cut(s) 464, 474, 627, 769
Bsh1236I CGCG 2 cut(s) 329, 386
BshFI GGCC 3 cut(s) 344, 373, 724
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 3 cut(s) 50, 749, 1202
BsiSI CCGG 4 cut(s) 17, 23, 36, 1267
BslFI GGGAC 1 cut(s) 1221
BslI CCNNNNNNNGG 4 cut(s) 22, 588, 772, 909
BsmAI GTCTC 4 cut(s) 166, 375, 596, 922
BsmBI CGTCTC 2 cut(s) 166, 375
BsmFI GGGAC 1 cut(s) 1221
BsnI GGCC 3 cut(s) 344, 373, 724
Bsp1286I GDGCHC 4 cut(s) 50, 718, 749, 1202
Bsp143I GATC 3 cut(s) 85, 318, 787
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 7 cut(s) 26, 41, 51, 169, 181, 329, 490
BspANI GGCC 3 cut(s) 344, 373, 724
BspCNI CTCAG 2 cut(s) 116, 157
BspFNI CGCG 2 cut(s) 329, 386
BspLI GGNNCC 4 cut(s) 21, 549, 1236, 1237
BspMAI CTGCAG 2 cut(s) 454, 787
BspMI ACCTGC 1 cut(s) 1006
BspPI GGATC 2 cut(s) 80, 782
BspT107I GGYRCC 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 5 cut(s) 307, 466, 510, 841, 949
BssAI RCCGGY 1 cut(s) 22
BssMI GATC 3 cut(s) 85, 318, 787
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 683, 1163
BstACI GRCGYC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 1263
BstC8I GCNNGC 6 cut(s) 24, 46, 162, 390, 468, 561
BstDEI CTNAG 5 cut(s) 103, 139, 165, 872, 1217
BstF5I GGATG 4 cut(s) 421, 578, 676, 1187
BstFNI CGCG 2 cut(s) 329, 386
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 3 cut(s) 22, 388, 1121
BstKTI GATC 3 cut(s) 88, 321, 790
BstMAI GTCTC 4 cut(s) 166, 375, 596, 922
BstMBI GATC 3 cut(s) 85, 318, 787
BstMWI GCNNNNNNNGC 6 cut(s) 50, 166, 187, 341, 496, 744
BstNSI RCATGY 2 cut(s) 164, 470
BstPAI GACNNNNGTC 1 cut(s) 981
BstSCI CCNGG 2 cut(s) 15, 1266
BstSFI CTRYAG 3 cut(s) 239, 450, 783
BstSLI GKGCMC 1 cut(s) 1202
BstUI CGCG 2 cut(s) 329, 386
BstV1I GCAGC 4 cut(s) 464, 474, 627, 769
BstX2I RGATCY 2 cut(s) 85, 787
BstXI CCANNNNNNTGG 3 cut(s) 436, 585, 956
BstYI RGATCY 2 cut(s) 85, 787
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 3 cut(s) 344, 373, 724
BtsCI GGATG 4 cut(s) 421, 578, 676, 1187
BtsIMutI CAGTG 4 cut(s) 503, 715, 834, 956
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 6 cut(s) 24, 46, 162, 390, 468, 561
CfoI GCGC 3 cut(s) 22, 388, 1121
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 5 cut(s) 111, 371, 547, 941, 1235
CseI GACGC 2 cut(s) 335, 392
Csp6I GTAC 1 cut(s) 1264
CviAII CATG 2 cut(s) 161, 467
CviQI GTAC 1 cut(s) 1264
DdeI CTNAG 5 cut(s) 103, 139, 165, 872, 1217
DinI GGCGCC 1 cut(s) 21
DpnI GATC 3 cut(s) 87, 320, 789
DpnII GATC 3 cut(s) 85, 318, 787
EaeI YGGCCR 2 cut(s) 342, 722
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 2 cut(s) 50, 718
Eco32I GATATC 1 cut(s) 1278
Eco47I GGWCC 4 cut(s) 111, 547, 941, 1235
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 3 cut(s) 724, 1035, 1214
EcoICRI GAGCTC 1 cut(s) 48
EcoO109I RGGNCCY 2 cut(s) 941, 1235
EcoRV GATATC 1 cut(s) 1278
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 2 cut(s) 50, 718
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
Esp3I CGTCTC 2 cut(s) 166, 375
FaeI CATG 2 cut(s) 164, 470
FaqI GGGAC 1 cut(s) 1221
FatI CATG 2 cut(s) 160, 466
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 1292
Fnu4HI GCNGC 5 cut(s) 42, 453, 488, 616, 783
FokI GGATG 4 cut(s) 428, 565, 683, 1194
FriOI GRGCYC 2 cut(s) 50, 718
Fsp4HI GCNGC 5 cut(s) 42, 453, 488, 616, 783
FspBI CTAG 2 cut(s) 572, 648
FspI TGCGCA 1 cut(s) 1120
GlaI GCGC 3 cut(s) 21, 387, 1120
GluI GCNGC 5 cut(s) 42, 453, 488, 616, 783
GsuI CTGGAG 1 cut(s) 858
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 3 cut(s) 344, 373, 724
HapII CCGG 4 cut(s) 17, 23, 36, 1267
HgaI GACGC 2 cut(s) 335, 392
HhaI GCGC 3 cut(s) 22, 388, 1121
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 2 cut(s) 164, 470
Hin6I GCGC 3 cut(s) 20, 386, 1119
HinP1I GCGC 3 cut(s) 20, 386, 1119
HincII GTYRAC 1 cut(s) 1293
HindII GTYRAC 1 cut(s) 1293
HinfI GANTC 1 cut(s) 977
HpaII CCGG 4 cut(s) 17, 23, 36, 1267
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 3 cut(s) 733, 1200, 1293
Hpy188I TCNGA 4 cut(s) 202, 444, 583, 1051
Hpy188III TCNNGA 5 cut(s) 361, 378, 742, 1127, 1212
Hpy8I GTNNAC 3 cut(s) 733, 1200, 1293
Hpy99I CGWCG 1 cut(s) 723
HpyAV CCTTC 6 cut(s) 171, 358, 510, 512, 561, 932
HpyCH4III ACNGT 2 cut(s) 683, 1163
HpyCH4IV ACGT 2 cut(s) 801, 1262
HpyCH4V TGCA 7 cut(s) 125, 452, 632, 785, 834, 1134, 1200
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 166, 187, 341, 496, 744
HpyF3I CTNAG 5 cut(s) 103, 139, 165, 872, 1217
HpySE526I ACGT 2 cut(s) 801, 1262
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 164, 470
HspAI GCGC 3 cut(s) 20, 386, 1119
KasI GGCGCC 1 cut(s) 19
KflI GGGWCCC 1 cut(s) 1235
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 3 cut(s) 85, 318, 787
LmnI GCTCC 2 cut(s) 53, 744
Lsp1109I GCAGC 4 cut(s) 464, 474, 627, 769
LweI GCATC 5 cut(s) 358, 619, 641, 1061, 1117
MaeI CTAG 2 cut(s) 572, 648
MaeII ACGT 2 cut(s) 801, 1262
MaeIII GTNAC 1 cut(s) 1101
MalI GATC 3 cut(s) 87, 320, 789
MbiI CCGCTC 1 cut(s) 169
MboI GATC 3 cut(s) 85, 318, 787
MboII GAAGA 5 cut(s) 87, 90, 287, 527, 1220
MflI RGATCY 2 cut(s) 85, 787
MhlI GDGCHC 4 cut(s) 50, 718, 749, 1202
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 7 cut(s) 63, 98, 298, 355, 892, 961, 1171
MluNI TGGCCA 1 cut(s) 344
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 1 cut(s) 214
Mox20I TGGCCA 1 cut(s) 344
Mph1103I ATGCAT 1 cut(s) 634
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 344
MseI TTAA 2 cut(s) 905, 1175
MslI CAYNNNNRTG 3 cut(s) 583, 708, 1245
Msp20I TGGCCA 1 cut(s) 344
MspI CCGG 4 cut(s) 17, 23, 36, 1267
MspR9I CCNGG 2 cut(s) 17, 1268
MvnI CGCG 2 cut(s) 329, 386
MwoI GCNNNNNNNGC 6 cut(s) 50, 166, 187, 341, 496, 744
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 2 cut(s) 17, 1268
NdeII GATC 3 cut(s) 85, 318, 787
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 164, 470
NlaIV GGNNCC 4 cut(s) 21, 549, 1236, 1237
NsbI TGCGCA 1 cut(s) 1120
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 2 cut(s) 164, 470
PaeI GCATGC 2 cut(s) 164, 470
PaqCI CACCTGC 1 cut(s) 1006
PdiI GCCGGC 1 cut(s) 24
PkrI GCNGC 5 cut(s) 43, 454, 489, 617, 784
PleI GAGTC 1 cut(s) 971
PluTI GGCGCC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 971
Ppu21I YACGTR 1 cut(s) 1263
PpuMI RGGWCCY 2 cut(s) 941, 1235
PshAI GACNNNNGTC 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 801
Psp5II RGGWCCY 2 cut(s) 941, 1235
PspN4I GGNNCC 4 cut(s) 21, 549, 1236, 1237
PspPI GGNCC 5 cut(s) 111, 371, 547, 941, 1235
PspPPI RGGWCCY 2 cut(s) 941, 1235
PstI CTGCAG 2 cut(s) 454, 787
PsuI RGATCY 2 cut(s) 85, 787
RsaI GTAC 1 cut(s) 1265
RsaNI GTAC 1 cut(s) 1264
RseI CAYNNNNRTG 3 cut(s) 583, 708, 1245
SacI GAGCTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 1291
SaqAI TTAA 2 cut(s) 905, 1175
SatI GCNGC 5 cut(s) 42, 453, 488, 616, 783
Sau3AI GATC 3 cut(s) 85, 318, 787
Sau96I GGNCC 5 cut(s) 111, 371, 547, 941, 1235
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 2 cut(s) 17, 1268
SduI GDGCHC 4 cut(s) 50, 718, 749, 1202
SfaNI GCATC 5 cut(s) 358, 619, 641, 1061, 1117
SfcI CTRYAG 3 cut(s) 239, 450, 783
SfoI GGCGCC 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 4 cut(s) 111, 547, 941, 1235
SmiMI CAYNNNNRTG 3 cut(s) 583, 708, 1245
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SphI GCATGC 2 cut(s) 164, 470
Sse9I AATT 7 cut(s) 63, 98, 298, 355, 892, 961, 1171
SsiI CCGC 7 cut(s) 26, 41, 51, 169, 181, 329, 490
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 2 cut(s) 572, 648
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 15, 1266
TaaI ACNGT 2 cut(s) 683, 1163
TaiI ACGT 2 cut(s) 804, 1265
TaqI TCGA 4 cut(s) 718, 1111, 1213, 1292
TasI AATT 7 cut(s) 63, 98, 298, 355, 892, 961, 1171
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 905, 1175
Tru9I TTAA 2 cut(s) 905, 1175
TscAI CASTG 4 cut(s) 510, 715, 841, 956
TseI GCWGC 4 cut(s) 452, 487, 615, 782
TspDTI ATGAA 4 cut(s) 297, 951, 1172, 1263
TspGWI ACGGA 3 cut(s) 78, 780, 836
TspRI CASTG 4 cut(s) 510, 715, 841, 956
VneI GTGCAC 1 cut(s) 1198
VpaK11BI GGWCC 4 cut(s) 111, 547, 941, 1235
XapI RAATTY 3 cut(s) 892, 961, 1171
XceI RCATGY 2 cut(s) 164, 470
XmiI GTMKAC 1 cut(s) 1292
XspI CTAG 2 cut(s) 572, 648
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.