Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008087

Physical Location & Seq

Genomic Coordinates Reverse (-)

18208721 .. 18213296

Gene Structure 4576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G242000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGAGAGGGTGTTTTCCTGCGCCGGCGGTTATCTCCGGTGCAGGGAGCTCTACAATGACTCAAATTGTTTTAGGGGGCAGAAGAAAGAAAGATCCTTTTGAATTGCCAGTCTGCTCCTCAACCTCAACTTGCTTTGCCTTGTTAATCCATAAGGAGCATAACCAGCAAAGCCAAATTCAAAGACAAAGACAAAGACGAAGAGAATGCGTTTGGCTTTCAGAAAGAAGAAAATGGAAAGGTGGACGTAGTGTGGGAGTTGCTTTACAAGTACAACAGCAACAATGCACCTACGAAAGCAGAGAGGACAAGGAGTGGGTGGTCGTCAATTTTTACCATTTTGTGTTCATCAAAGACGCAGAGGCAGAGGTGGCCAAGCATCTCTCTTTCTTAGAGGGTCGTGACATACGTGGGCGGATTTATGTGAATCAACAAGGGATAAATGCACAGTACAGTGGACCGTTAAGAGATGCGCTTGCATATGTTGAATGGTTAAGAGGGGATGAGAGATTTTCCGACATTCTCGTACAGATTTCTGCAGCACTGAATGGACATGCCTTTCCAAAACTCAAGTTGCGCTATAAGCCTTCACTGGTTCAGTTAGAAGGAGGTATTTCGCATCTTCCTTTGCTGGACCCTTCAATGCGAGCAACACCTCTTACGCCATCCGAATGGCGGAAAAGATTGGAAGCAGTCAATACAACTACTGAAGCATCAAATAAGGATCTTAAAACGAACCAAATTTTATTGGATGTGAGAAACGGTTATGAGTGGGATATTGGTCATTTTAATGGGGCTCGACGACCCGATGTGGACTGCTTTAGGAGCACTTCTTTTGGGTTATTCCAACCAGAGGTCATTGCTGCAGATCCGTTAGAAAATGTTGATAAAGAAAAAACGGATATATTGATGTATTGCACTGGAGGTATCCGTTGTGATGTATATTCTACAATTTTAAGACAACAGGGCTTTCAAAACTTATACACCTTAAAGGGAGGTGTTTCTCATTATCTGGAGAACGAAGGTCCGGTCCAATGGGTTGGGAATTTGTTTGTATTTGACTCTCGTCTCTCTCTCCCACCGCCTGCCTACAAGCCTGAAGCCATAACTAAACCAAACAGGCATGAAGTTTCCAAGAACAATACATTTGCTCAATGCTATATATGCAGTTTACAAGTCTGTGAGTTAAGACATAGAAACTGTGCAAATCTTGACTGCAACCTGCTCTATCTATGCTGTATGAACTGTGTGAAGGATTTAAGAGGATGCTGCTGTTTGGAGTGCACAGGTGCTCCTCGACTTAGACCTGTTCTTCCTGGGTTCCAGAGATATAAGAAGTGGCACACATATCGAGATACAATCTCGCAAAGCAAGTTGACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rhodanese_C

Protein Analysis

461

Amino Acids

52.49

Weight (kDa)

8.97

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17850 AT1G17850
fragaria_vesca	FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210
malus_domestica	MD06G1237700.v1.1 MD14G1244500.v1.1
prunus_persica	Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1
pyrus_communis	pycom14g20560
rosa_chinensis	RchiOBHm_Chr7g0177381
rosa_laevigata	RLG00000005541
rosa_multiflora	Rmu_sc0005310.1_g000003 Rmu_sc0005545.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275900
rosa_rugosa	Rorug06G0405500
rosa_samantha	Rh7AG005100 Rh7BG005100 Rh7CG005200 Rh7DG004900
rosa_wichuraiana	Rw7G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1227
AciI	CCGC	4 cut(s)	26, 412, 673, 1079
AclWI	GGATC	3 cut(s)	86, 729, 860
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	174, 738, 1042
AcuI	CTGAAG	2 cut(s)	726, 1116
AfaI	GTAC	3 cut(s)	270, 449, 525
AfiI	CCNNNNNNNGG	3 cut(s)	42, 672, 850
AgsI	TTSAA	5 cut(s)	101, 179, 485, 639, 971
AjnI	CCWGG	1 cut(s)	1312
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw21I	GWGCWC	4 cut(s)	50, 827, 1283, 1291
Alw26I	GTCTC	1 cut(s)	1070
Alw44I	GTGCAC	1 cut(s)	1279
AlwI	GGATC	3 cut(s)	86, 729, 860
AoxI	GGCC	1 cut(s)	369
ApaLI	GTGCAC	1 cut(s)	1279
ApeKI	GCWGC	3 cut(s)	536, 860, 1266
ApoI	RAATTY	3 cut(s)	174, 738, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	1011, 1043
AspLEI	GCGC	3 cut(s)	22, 472, 576
AspS9I	GGNCC	4 cut(s)	455, 631, 1022, 1027
AvaII	GGWCC	4 cut(s)	455, 631, 1022, 1027
BaeGI	GKGCMC	1 cut(s)	1283
BalI	TGGCCA	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	50, 796
Bbv12I	GWGCWC	4 cut(s)	50, 827, 1283, 1291
BbvI	GCAGC	3 cut(s)	548, 847, 1253
BccI	CCATC	1 cut(s)	670
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 1328, 1362
BciT130I	CCWGG	1 cut(s)	1314
BciVI	GTATCC	1 cut(s)	935
BcoDI	GTCTC	1 cut(s)	1070
BfmI	CTRYAG	2 cut(s)	534, 861
BfuAI	ACCTGC	1 cut(s)	1227
BfuI	GTATCC	1 cut(s)	935
BisI	GCNGC	3 cut(s)	537, 861, 1267
BlsI	GCNGC	3 cut(s)	538, 862, 1268
Bme1390I	CCNGG	1 cut(s)	1314
Bme18I	GGWCC	4 cut(s)	455, 631, 1022, 1027
BmgT120I	GGNCC	4 cut(s)	455, 631, 1022, 1027
BmiI	GGNNCC	2 cut(s)	633, 1319
BmrFI	CCNGG	1 cut(s)	1314
BmsI	GCATC	5 cut(s)	385, 457, 625, 719, 1253
BoxI	GACNNNNGTC	1 cut(s)	1062
BpmI	CTGGAG	2 cut(s)	939, 1031
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	1313
BsaWI	WCCGGW	2 cut(s)	35, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	1273, 1303
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 672, 850
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	107, 594, 922
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	1314
BseDI	CCNNGG	1 cut(s)	1313
BseGI	GGATG	4 cut(s)	505, 662, 754, 1268
BseLI	CCNNNNNNNGG	3 cut(s)	42, 672, 850
BseMI	GCAATG	1 cut(s)	855
BseNI	ACTGG	3 cut(s)	107, 594, 922
BseRI	GAGGAG	2 cut(s)	106, 1281
BseSI	GKGCMC	1 cut(s)	1283
BseXI	GCAGC	3 cut(s)	548, 847, 1253
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	371
BsiHKAI	GWGCWC	4 cut(s)	50, 827, 1283, 1291
BsiSI	CCGG	3 cut(s)	23, 36, 1025
BslI	CCNNNNNNNGG	3 cut(s)	42, 672, 850
BsmAI	GTCTC	1 cut(s)	1070
BsmBI	CGTCTC	1 cut(s)	1070
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	371
Bsp1286I	GDGCHC	5 cut(s)	50, 796, 827, 1283, 1291
Bsp143I	GATC	3 cut(s)	91, 721, 865
BspACI	CCGC	4 cut(s)	26, 412, 673, 1079
BspANI	GGCC	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	633, 1319
BspMAI	CTGCAG	2 cut(s)	538, 865
BspMI	ACCTGC	1 cut(s)	1227
BspPI	GGATC	3 cut(s)	86, 729, 860
BsrDI	GCAATG	1 cut(s)	855
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	107, 594, 922
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	1313
BssMI	GATC	3 cut(s)	91, 721, 865
Bst2UI	CCWGG	1 cut(s)	1314
Bst4CI	ACNGT	6 cut(s)	447, 452, 459, 761, 1199, 1244
Bst6I	CTCTTC	1 cut(s)	193
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	24, 474, 645, 1083
BstDEI	CTNAG	2 cut(s)	388, 1298
BstF5I	GGATG	4 cut(s)	505, 662, 754, 1268
BstHHI	GCGC	3 cut(s)	22, 472, 576
BstKTI	GATC	3 cut(s)	94, 724, 868
BstMAI	GTCTC	1 cut(s)	1070
BstMBI	GATC	3 cut(s)	91, 721, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 368, 580, 822, 1161
BstNI	CCWGG	1 cut(s)	1314
BstNSI	RCATGY	1 cut(s)	554
BstPAI	GACNNNNGTC	1 cut(s)	1062
BstSCI	CCNGG	1 cut(s)	1312
BstSFI	CTRYAG	2 cut(s)	534, 861
BstSLI	GKGCMC	1 cut(s)	1283
BstV1I	GCAGC	3 cut(s)	548, 847, 1253
BstX2I	RGATCY	3 cut(s)	91, 721, 865
BstXI	CCANNNNNNTGG	2 cut(s)	669, 1037
BstYI	RGATCY	3 cut(s)	91, 721, 865
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	1 cut(s)	371
BtsCI	GGATG	4 cut(s)	505, 662, 754, 1268
BtsIMutI	CAGTG	4 cut(s)	457, 539, 587, 915
BveI	ACCTGC	1 cut(s)	1227
Cac8I	GCNNGC	4 cut(s)	24, 474, 645, 1083
CfoI	GCGC	3 cut(s)	22, 472, 576
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	4 cut(s)	455, 631, 1022, 1027
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	269, 448, 524
CviAII	CATG	2 cut(s)	551, 1121
CviJI	RGCY	9 cut(s)	48, 171, 214, 371, 583, 794, 966, 1093, 1100
CviKI_1	RGCY	9 cut(s)	48, 171, 214, 371, 583, 794, 966, 1093, 1100
CviQI	GTAC	3 cut(s)	269, 448, 524
DdeI	CTNAG	2 cut(s)	388, 1298
DpnI	GATC	3 cut(s)	93, 723, 867
DpnII	GATC	3 cut(s)	91, 721, 865
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
EciI	GGCGGA	2 cut(s)	427, 688
Ecl136II	GAGCTC	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	50, 796
Eco47I	GGWCC	4 cut(s)	455, 631, 1022, 1027
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	726, 1116
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	1312
EcoT38I	GRGCYC	2 cut(s)	50, 796
Esp3I	CGTCTC	1 cut(s)	1070
FaeI	CATG	2 cut(s)	554, 1124
FatI	CATG	2 cut(s)	550, 1120
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	537, 861, 1267
FokI	GGATG	4 cut(s)	512, 649, 761, 1275
FriOI	GRGCYC	2 cut(s)	50, 796
Fsp4HI	GCNGC	3 cut(s)	537, 861, 1267
GlaI	GCGC	3 cut(s)	21, 471, 575
GluI	GCNGC	3 cut(s)	537, 861, 1267
GsuI	CTGGAG	2 cut(s)	939, 1031
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	3 cut(s)	23, 36, 1025
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	3 cut(s)	22, 472, 576
Hin1II	CATG	2 cut(s)	554, 1124
Hin6I	GCGC	3 cut(s)	20, 470, 574
HinP1I	GCGC	3 cut(s)	20, 470, 574
HincII	GTYRAC	1 cut(s)	1374
HindII	GTYRAC	1 cut(s)	1374
HinfI	GANTC	3 cut(s)	58, 424, 1058
HpaII	CCGG	3 cut(s)	23, 36, 1025
Hpy166II	GTNNAC	6 cut(s)	242, 455, 811, 1169, 1281, 1374
Hpy188I	TCNGA	3 cut(s)	220, 514, 667
Hpy188III	TCNNGA	5 cut(s)	398, 1010, 1208, 1321, 1349
Hpy8I	GTNNAC	6 cut(s)	242, 455, 811, 1169, 1281, 1374
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	5 cut(s)	594, 596, 645, 1013, 1243
HpyCH4III	ACNGT	6 cut(s)	447, 452, 459, 761, 1199, 1244
HpyCH4IV	ACGT	2 cut(s)	244, 406
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 368, 580, 822, 1161
HpyF3I	CTNAG	2 cut(s)	388, 1298
HpySE526I	ACGT	2 cut(s)	244, 406
Hsp92II	CATG	2 cut(s)	554, 1124
HspAI	GCGC	3 cut(s)	20, 470, 574
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	91, 721, 865
LmnI	GCTCC	5 cut(s)	45, 119, 154, 822, 1294
Lsp1109I	GCAGC	3 cut(s)	548, 847, 1253
LweI	GCATC	5 cut(s)	385, 457, 625, 719, 1253
MaeII	ACGT	2 cut(s)	244, 406
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	3 cut(s)	93, 723, 867
MboI	GATC	3 cut(s)	91, 721, 865
MboII	GAAGA	5 cut(s)	93, 210, 237, 611, 1301
MflI	RGATCY	3 cut(s)	91, 721, 865
MhlI	GDGCHC	5 cut(s)	50, 796, 827, 1283, 1291
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	7 cut(s)	63, 101, 174, 325, 738, 948, 1042
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	52, 1052
MmeI	TCCRAC	2 cut(s)	537, 868
Mox20I	TGGCCA	1 cut(s)	371
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	9 cut(s)	143, 461, 491, 726, 786, 953, 986, 1184, 1256
MslI	CAYNNNNRTG	2 cut(s)	667, 786
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	3 cut(s)	23, 36, 1025
MspR9I	CCNGG	1 cut(s)	1314
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	1314
MwoI	GCNNNNNNNGC	5 cut(s)	163, 368, 580, 822, 1161
NaeI	GCCGGC	1 cut(s)	24
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	3 cut(s)	91, 721, 865
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	554, 1124
NlaIV	GGNNCC	2 cut(s)	633, 1319
NmuCI	GTSAC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	538, 862, 1268
PleI	GAGTC	2 cut(s)	52, 1052
PpsI	GAGTC	2 cut(s)	52, 1052
Ppu21I	YACGTR	1 cut(s)	407
PshAI	GACNNNNGTC	1 cut(s)	1062
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	1312
PspGI	CCWGG	1 cut(s)	1312
PspN4I	GGNNCC	2 cut(s)	633, 1319
PspPI	GGNCC	4 cut(s)	455, 631, 1022, 1027
PstI	CTGCAG	2 cut(s)	538, 865
PsuI	RGATCY	3 cut(s)	91, 721, 865
RsaI	GTAC	3 cut(s)	270, 449, 525
RsaNI	GTAC	3 cut(s)	269, 448, 524
RseI	CAYNNNNRTG	2 cut(s)	667, 786
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	9 cut(s)	143, 461, 491, 726, 786, 953, 986, 1184, 1256
SatI	GCNGC	3 cut(s)	537, 861, 1267
Sau3AI	GATC	3 cut(s)	91, 721, 865
Sau96I	GGNCC	4 cut(s)	455, 631, 1022, 1027
SchI	GAGTC	2 cut(s)	52, 1052
ScrFI	CCNGG	1 cut(s)	1314
SduI	GDGCHC	5 cut(s)	50, 796, 827, 1283, 1291
SfaNI	GCATC	5 cut(s)	385, 457, 625, 719, 1253
SfcI	CTRYAG	2 cut(s)	534, 861
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	4 cut(s)	455, 631, 1022, 1027
SmiMI	CAYNNNNRTG	2 cut(s)	667, 786
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	7 cut(s)	63, 101, 174, 325, 738, 948, 1042
SsiI	CCGC	4 cut(s)	26, 412, 673, 1079
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	1312
TaaI	ACNGT	6 cut(s)	447, 452, 459, 761, 1199, 1244
TaiI	ACGT	2 cut(s)	247, 409
TaqI	TCGA	3 cut(s)	796, 1294, 1348
TasI	AATT	7 cut(s)	63, 101, 174, 325, 738, 948, 1042
TatI	WGTACW	2 cut(s)	268, 447
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	9 cut(s)	143, 461, 491, 726, 786, 953, 986, 1184, 1256
Tru9I	TTAA	9 cut(s)	143, 461, 491, 726, 786, 953, 986, 1184, 1256
TscAI	CASTG	4 cut(s)	457, 546, 594, 922
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	536, 860, 1266
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	334, 1137, 1253
TspGWI	ACGGA	3 cut(s)	858, 911, 917
TspRI	CASTG	4 cut(s)	457, 546, 594, 922
VneI	GTGCAC	1 cut(s)	1279
VpaK11BI	GGWCC	4 cut(s)	455, 631, 1022, 1027
XapI	RAATTY	3 cut(s)	174, 738, 1042
XceI	RCATGY	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.