MD14G1244500.v1.1

Rhodanese-like domain-containing protein 8

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
32266875 .. 32270162
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1244500.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGAGAGGGAGTTTTCCGGCGCCGGCGGTTATATCCGGTGCGGTGAGCTTCACAATTACTCAAATTTCTTTGGTGGGCAGAAGAAAGAAAGATTCGTTTGAATTCCCGGTCTGCTCCTCCTCCCAAACAGCTCGCTTTTCCTTCTCAATTCACGACGAGCATAACCAGCAGAGGCAAAGACAGAGTCGAAGACAATGCCTTTGGTTACCAGGGAGAAGCAAATGGAAAGGAGGACGTCGTGCGGGCATTGGCTCGCAATGCAAGTGCAACTACGAAAGCGGAGGAGAGGATAACGAATGGGTGGTGGTGAATTTCTACCATTTCGTGATGATCAAAGACGCAGAGGCGGAGGTAGCCAAGCATCTCTTTTTCGTTGAGGACCTCGACATACGCGGACGGATATATCTGAATGAACAAGGGATAAATGCACAGTACAGTGGGCCGTTGAGAGATGCACTTGCATATGTTGAATGGTTAAGGGGGGACGAGAGATTTTCTGGCATCCTAGTGCAGATTTCTGCAGCAACAAATGGGCACGCCTTTCCAAAACTCAAGTTGCGGTATAAGCCCTCACTGGTTCAGTTAGAAGGAGGTATTTCACATCTTCCTTTGCTGGACCCTTCAATGCGAGCAACGCCTCTATCGCCATCTGAATGGAGAAAGAGATTGGAATCATTGAAAACAACTAGTGATGCATCAAATGACAATCTTAAAAGAAACCAGATTTTATTGGATGTGAGAAATGGTTATGAGTGGGATATTGGTCATTTTGAAGGGGCTCGGCGACCTGATGTGGACTGCTTTAGGAGCACTTCGTTTGGGTTATCGCAACCAGAGGTCATTGCCGCAGATCCTTTAGAAAATGTTGACAAAGAAAAGACAGATATAATGATGTATTGCACTGGAGGTATCCGTTGTGATGTATATTCCACAATCCTAAGACAACAGGGCTTTCAAAATTTATACACATTAAGGGGAGGTGTTTCTCATTATCTGGAGAATGAAGGTCCTGTTCGGTGGATTGGTAATTTGTTCGTATTTGACTCTCGTCTCTCTCTCCCACCGCCTGCCTACAAGCCTGAAGCCGCGACTAAAGCAAGCACGCATGAAGATTCAGATAATAATACGTTCGCTAGATGCTATATATGCGGTTCACAAGTCTGTGAGTTAAGGCATAGAAACTGTGCAAATCTCGACTGCAATCTGCTGTATCTATGCTGTATGAACTGTGTGAAGGATTTAAGAGGATGTTGCTGTTCCAACTGCACAACTGCTGCTCGACTTAGAACTGTTCTTCCAGGGTTCCAGAGATACAAGAAGTGGCACACGTATCGAGATTCGATACCACACAGCCGGTTGACGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

51.61

Weight (kDa)

8.77

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0176_N PF17773 100 - 190 6.2e-17 UPF0176 acylphosphatase like domain
Rhodanese PF00581 235 - 332 1.4e-08 Rhodanese-like domain
Rhodanese_C PF12368 342 - 423 9.9e-16 Rhodanase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 2 cut(s) 393, 1088
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 4 cut(s) 63, 101, 310, 958
AcuI CTGAAG 1 cut(s) 1101
AcyI GRCGYC 2 cut(s) 20, 235
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 1360
AflIII ACRYGT 1 cut(s) 1326
AgsI TTSAA 6 cut(s) 101, 470, 624, 679, 773, 956
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 2 cut(s) 208, 1297
AloI GAACNNNNNNTCC 2 cut(s) 1279, 1311
AluBI AGCT 2 cut(s) 48, 131
AluI AGCT 2 cut(s) 48, 131
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 1 cut(s) 1055
AlwI GGATC 1 cut(s) 845
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 521, 1274
ApoI RAATTY 4 cut(s) 63, 101, 310, 958
ArsI GACNNNNNNTTYG 4 cut(s) 169, 183, 201, 215
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 4 cut(s) 379, 440, 616, 1007
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 55, 319
AvaII GGWCC 3 cut(s) 379, 616, 1007
BaeGI GKGCMC 1 cut(s) 537
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 781
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 2 cut(s) 533, 1261
BccI CCATC 1 cut(s) 655
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 4 cut(s) 177, 211, 1313, 1347
BciT130I CCWGG 2 cut(s) 210, 1299
BciVI GTATCC 1 cut(s) 920
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 1055
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 3 cut(s) 506, 687, 1134
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 1 cut(s) 920
BisI GCNGC 4 cut(s) 522, 846, 1086, 1275
BlsI GCNGC 4 cut(s) 523, 847, 1087, 1276
Bme1390I CCNGG 3 cut(s) 107, 210, 1299
Bme18I GGWCC 3 cut(s) 379, 616, 1007
BmgT120I GGNCC 4 cut(s) 379, 440, 616, 1007
BmiI GGNNCC 3 cut(s) 21, 618, 1304
BmrFI CCNGG 3 cut(s) 107, 210, 1299
BmsI GCATC 6 cut(s) 370, 442, 510, 682, 704, 1127
BoxI GACNNNNGTC 1 cut(s) 1047
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 924, 1016
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 1329
BsaBI GATNNNNATC 1 cut(s) 670
BsaHI GRCGYC 2 cut(s) 20, 235
BsaJI CCNNGG 2 cut(s) 209, 1298
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 1360
Bse118I RCCGGY 2 cut(s) 22, 1353
Bse1I ACTGG 2 cut(s) 579, 907
Bse3DI GCAATG 2 cut(s) 263, 840
Bse8I GATNNNNATC 1 cut(s) 670
BseBI CCWGG 2 cut(s) 210, 1299
BseDI CCNNGG 2 cut(s) 209, 1298
BseGI GGATG 3 cut(s) 501, 739, 1253
BseJI GATNNNNATC 1 cut(s) 670
BseLI CCNNNNNNNGG 1 cut(s) 1360
BseMI GCAATG 2 cut(s) 263, 840
BseNI ACTGG 2 cut(s) 579, 907
BseRI GAGGAG 3 cut(s) 106, 109, 297
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 2 cut(s) 533, 1261
BsgI GTGCAG 2 cut(s) 530, 1249
Bsh1236I CGCG 2 cut(s) 393, 1088
BshFI GGCC 1 cut(s) 442
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 812
BsiSI CCGG 5 cut(s) 17, 23, 36, 107, 1354
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 1360
BsmAI GTCTC 1 cut(s) 1055
BsmBI CGTCTC 1 cut(s) 1055
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 1 cut(s) 442
Bsp1286I GDGCHC 3 cut(s) 537, 781, 812
Bsp143I GATC 2 cut(s) 330, 850
BspANI GGCC 1 cut(s) 442
BspFNI CGCG 2 cut(s) 393, 1088
BspLI GGNNCC 3 cut(s) 21, 618, 1304
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 2 cut(s) 263, 840
BsrFI RCCGGY 2 cut(s) 22, 1353
BsrI ACTGG 2 cut(s) 579, 907
BssAI RCCGGY 2 cut(s) 22, 1353
BssECI CCNNGG 2 cut(s) 209, 1298
BssMI GATC 2 cut(s) 330, 850
BssNI GRCGYC 2 cut(s) 20, 235
Bst2UI CCWGG 2 cut(s) 210, 1299
Bst4CI ACNGT 5 cut(s) 432, 437, 1184, 1229, 1291
BstACI GRCGYC 2 cut(s) 20, 235
BstBAI YACGTR 1 cut(s) 1329
BstC8I GCNNGC 9 cut(s) 24, 133, 244, 254, 537, 630, 1068, 1099, 1103
BstDEI CTNAG 2 cut(s) 938, 1283
BstEII GGTNACC 1 cut(s) 204
BstF5I GGATG 3 cut(s) 501, 739, 1253
BstFNI CGCG 2 cut(s) 393, 1088
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 333, 853
BstMAI GTCTC 1 cut(s) 1055
BstMBI GATC 2 cut(s) 330, 850
BstMWI GCNNNNNNNGC 9 cut(s) 166, 258, 353, 565, 634, 643, 807, 1094, 1146
BstNI CCWGG 2 cut(s) 210, 1299
BstPAI GACNNNNGTC 1 cut(s) 1047
BstPI GGTNACC 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 105, 208, 1297
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 537
BstUI CGCG 2 cut(s) 393, 1088
BstV1I GCAGC 2 cut(s) 533, 1261
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 850
BstXI CCANNNNNNTGG 1 cut(s) 654
BstYI RGATCY 1 cut(s) 850
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 501, 739, 1253
BtsIMutI CAGTG 3 cut(s) 442, 572, 900
Cac8I GCNNGC 9 cut(s) 24, 133, 244, 254, 537, 630, 1068, 1099, 1103
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 2 cut(s) 22, 1353
Cfr13I GGNCC 4 cut(s) 379, 440, 616, 1007
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 1106
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 938, 1283
DinI GGCGCC 1 cut(s) 21
DpnI GATC 2 cut(s) 332, 852
DpnII GATC 2 cut(s) 330, 850
EciI GGCGGA 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 781
Eco47I GGWCC 3 cut(s) 379, 616, 1007
Eco57I CTGAAG 1 cut(s) 1101
Eco91I GGTNACC 1 cut(s) 204
EcoO109I RGGNCCY 2 cut(s) 379, 1007
EcoO65I GGTNACC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 208, 1297
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 781
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 1055
FaeI CATG 1 cut(s) 1109
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 497
FatI CATG 1 cut(s) 1105
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 522, 846, 1086, 1275
FokI GGATG 3 cut(s) 488, 746, 1260
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 4 cut(s) 522, 846, 1086, 1275
FspBI CTAG 3 cut(s) 506, 687, 1134
GlaI GCGC 1 cut(s) 21
GluI GCNGC 4 cut(s) 522, 846, 1086, 1275
GsuI CTGGAG 2 cut(s) 924, 1016
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 1 cut(s) 442
HapII CCGG 5 cut(s) 17, 23, 36, 107, 1354
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 2 cut(s) 20, 235
Hin1II CATG 1 cut(s) 1109
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 2 cut(s) 868, 1359
HindII GTYRAC 2 cut(s) 868, 1359
HinfI GANTC 6 cut(s) 92, 184, 671, 1043, 1112, 1337
HpaII CCGG 5 cut(s) 17, 23, 36, 107, 1354
HphI GGTGA 2 cut(s) 55, 319
Hpy166II GTNNAC 4 cut(s) 796, 868, 1154, 1359
Hpy188I TCNGA 3 cut(s) 408, 652, 1117
Hpy188III TCNNGA 6 cut(s) 152, 325, 995, 1193, 1306, 1334
Hpy8I GTNNAC 4 cut(s) 796, 868, 1154, 1359
Hpy99I CGWCG 2 cut(s) 158, 240
HpyAV CCTTC 6 cut(s) 151, 581, 630, 767, 998, 1228
HpyCH4III ACNGT 5 cut(s) 432, 437, 1184, 1229, 1291
HpyCH4IV ACGT 3 cut(s) 235, 1127, 1328
HpyF10VI GCNNNNNNNGC 9 cut(s) 166, 258, 353, 565, 634, 643, 807, 1094, 1146
HpyF3I CTNAG 2 cut(s) 938, 1283
HpySE526I ACGT 3 cut(s) 235, 1127, 1328
Hsp92I GRCGYC 2 cut(s) 20, 235
Hsp92II CATG 1 cut(s) 1109
HspAI GCGC 1 cut(s) 20
KasI GGCGCC 1 cut(s) 19
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 330, 850
LmnI GCTCC 2 cut(s) 119, 807
Lsp1109I GCAGC 2 cut(s) 533, 1261
LweI GCATC 6 cut(s) 370, 442, 510, 682, 704, 1127
MaeI CTAG 3 cut(s) 506, 687, 1134
MaeII ACGT 3 cut(s) 235, 1127, 1328
MaeIII GTNAC 1 cut(s) 204
MalI GATC 2 cut(s) 332, 852
MboI GATC 2 cut(s) 330, 850
MboII GAAGA 5 cut(s) 93, 201, 596, 1121, 1286
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 3 cut(s) 537, 781, 812
MluCI AATT 7 cut(s) 54, 63, 101, 147, 310, 958, 1027
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 2 cut(s) 193, 1037
MmeI TCCRAC 1 cut(s) 1284
Mph1103I ATGCAT 1 cut(s) 697
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 5 cut(s) 476, 711, 971, 1169, 1241
MslI CAYNNNNRTG 2 cut(s) 506, 652
MspI CCGG 5 cut(s) 17, 23, 36, 107, 1354
MspR9I CCNGG 3 cut(s) 107, 210, 1299
MvaI CCWGG 2 cut(s) 210, 1299
MvnI CGCG 2 cut(s) 393, 1088
MwoI GCNNNNNNNGC 9 cut(s) 166, 258, 353, 565, 634, 643, 807, 1094, 1146
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 463
NdeII GATC 2 cut(s) 330, 850
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 1109
NlaIV GGNNCC 3 cut(s) 21, 618, 1304
NmeAIII GCCGAG 1 cut(s) 760
NsiI ATGCAT 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 92, 671, 1112, 1337
PflFI GACNNNGTC 1 cut(s) 183
PkrI GCNGC 4 cut(s) 523, 847, 1087, 1276
PleI GAGTC 2 cut(s) 192, 1037
PluTI GGCGCC 1 cut(s) 23
PpsI GAGTC 2 cut(s) 192, 1037
Ppu21I YACGTR 1 cut(s) 1329
PpuMI RGGWCCY 2 cut(s) 379, 1007
PshAI GACNNNNGTC 1 cut(s) 1047
Psp5II RGGWCCY 2 cut(s) 379, 1007
Psp6I CCWGG 2 cut(s) 208, 1297
PspEI GGTNACC 1 cut(s) 204
PspGI CCWGG 2 cut(s) 208, 1297
PspN4I GGNNCC 3 cut(s) 21, 618, 1304
PspPI GGNCC 4 cut(s) 379, 440, 616, 1007
PspPPI RGGWCCY 2 cut(s) 379, 1007
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 850
PsyI GACNNNGTC 1 cut(s) 183
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 506, 652
SaqAI TTAA 5 cut(s) 476, 711, 971, 1169, 1241
SatI GCNGC 4 cut(s) 522, 846, 1086, 1275
Sau3AI GATC 2 cut(s) 330, 850
Sau96I GGNCC 4 cut(s) 379, 440, 616, 1007
SchI GAGTC 2 cut(s) 193, 1037
ScrFI CCNGG 3 cut(s) 107, 210, 1299
SduI GDGCHC 3 cut(s) 537, 781, 812
SfaNI GCATC 6 cut(s) 370, 442, 510, 682, 704, 1127
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 3 cut(s) 379, 616, 1007
SmiMI CAYNNNNRTG 2 cut(s) 506, 652
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 7 cut(s) 54, 63, 101, 147, 310, 958, 1027
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 3 cut(s) 506, 687, 1134
StyD4I CCNGG 3 cut(s) 105, 208, 1297
TaaI ACNGT 5 cut(s) 432, 437, 1184, 1229, 1291
TaiI ACGT 3 cut(s) 238, 1130, 1331
TaqI TCGA 6 cut(s) 187, 384, 1194, 1279, 1333, 1340
TasI AATT 7 cut(s) 54, 63, 101, 147, 310, 958, 1027
TatI WGTACW 1 cut(s) 432
TauI GCSGC 2 cut(s) 848, 1088
TfiI GAWTC 4 cut(s) 92, 671, 1112, 1337
Tru1I TTAA 5 cut(s) 476, 711, 971, 1169, 1241
Tru9I TTAA 5 cut(s) 476, 711, 971, 1169, 1241
TscAI CASTG 3 cut(s) 442, 579, 907
TseI GCWGC 2 cut(s) 521, 1274
TspDTI ATGAA 4 cut(s) 426, 1017, 1122, 1238
TspGWI ACGGA 2 cut(s) 412, 902
TspRI CASTG 3 cut(s) 442, 579, 907
Tth111I GACNNNGTC 1 cut(s) 183
VpaK11BI GGWCC 3 cut(s) 379, 616, 1007
XapI RAATTY 4 cut(s) 63, 101, 310, 958
XspI CTAG 3 cut(s) 506, 687, 1134
ZraI GACGTC 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.