Rroxscaffold_3G00275900

Rhodanese-like domain-containing protein 8

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
67208078 .. 67210841
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275900.1

Sequence Viewer

Length: 1377 bp
ATGAGAGGGAGTTTCGCGGCGCCGGCGGTCATCTCCGGTGCGGCGAGCTCCGCAATCACTCAAATTGTTTGGGGAAGAAGAAAAGATCCGTTGTTTCAATTCTCAGTCTGGTCGTCAACAACTGCAACTTCAACTTGGTCGTGCTTAGTCTATAATAACAATAAGCATGATAAGCGGAGACGAAGGCGGTGGCTTTCGTTATCAGAAGCAAGTAGAGGGAGAGGTGTGAGCGTTGGCTTACAGCAACAATGCGAGTGTGAAAGTGAAAGTGAAAGTGAAAGCGAAAGCAGAGAAGATAATGAATGGGTGGTGGTCAATTTTTACCAGTTTGTGTTGATCAAAGACGCGGAGGCAGAAGTGACCAAGCATCTCAATTTCTTGAAGGGGCGTGATATACGTGGGCGGATATATGTGAATGAACAAGGGATAAATGCACAGTACAGTGGGCCGTCAAGAGACGCGCTTGCTTATGTTGAATGGGTGAGAGAGGATGAGAGATTTGCCAACTGCTTGGTGCAGATTTCTGCAGCACCAGCTGGGCATGCCTTTCCAAAACTCAAGCTGCGGTATAAGCCTTCACTGTTAGAAGGAGGTATTAGTCATCTTCCTTTGCTGGACCCTTCAATGCGAGCTACACCTCTACCACCATCCCAGTGGAGGAAAAGATTAGAGGCAGTGAACCGCAGCACTACTGCTGATCCTGATACATCAACTCAAAATCCTAAACCAAACTATATTCTATTGGATGTTAGAAACGGTTATGAGTGGGATATTGGTCATTTCAGTGGGGCTCGGCGGCCAGATGTGGACTGCTTCAGGAGCACTTCGTTTGGGCTATGCCAACCAGAGGTCATTGCTGCAGATCCGTTAGCCAACGTTGATAAAGAAACAGATATATTGATGTATTGCACTGGAGGTATCCGTTGTGATGTATATTCCACGATCCTAAGACAACAGGGCTTTCAAAATTTATACACCTTAAAGGGGGGTATCTCTCATTACCTAAAAAATGAAGGTCCTGTCCAGTGGGTTGGGAATTTGTTTGTGTTTGACTCCCGTCTTTCTCTCCCACCTGCTACCTACAAGCCTGAAGCCATAACTGAACCAAACAGAGTTGAAGTTTCAGAGAACAATACATTTGCCAGATGCTATATATGTGGTATAGAAGTCTGCGAGTTACGGCATCGAAACTGCGCAAATCTTGACTGCAACCTACTTTATCTATGCTGTATGGACTGTGTTGAGGATTTAAGAGGATGTTGCTGTTCAAAGTGCATAGCTGCTCCTCGACTTAGACCTGTTCTTCAGGGTCCCCATAGATATAAAAAATGGCACACGTACCGGGATTTGATATCACAAAGCAAGTCGACAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

51.79

Weight (kDa)

8.42

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0176_N PF17773 102 - 192 1.9e-16 UPF0176 acylphosphatase like domain
Rhodanese PF00581 242 - 335 2.4e-09 Rhodanese-like domain
Rhodanese_C PF12368 345 - 425 2.1e-15 Rhodanase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1081
Acc16I TGCGCA 1 cut(s) 1195
Acc36I ACCTGC 1 cut(s) 1081
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 1367
AccII CGCG 3 cut(s) 17, 347, 461
AclI AACGTT 1 cut(s) 876
AclWI GGATC 4 cut(s) 80, 692, 857, 937
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 2 cut(s) 967, 1036
AcuI CTGAAG 3 cut(s) 799, 1110, 1289
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 440, 1340
AfiI CCNNNNNNNGG 3 cut(s) 657, 847, 984
AflIII ACRYGT 1 cut(s) 1335
AgsI TTSAA 8 cut(s) 98, 132, 382, 476, 624, 965, 1118, 1269
AluBI AGCT 6 cut(s) 48, 536, 562, 632, 1280, 1373
AluI AGCT 6 cut(s) 48, 536, 562, 632, 1280, 1373
Alw21I GWGCWC 2 cut(s) 50, 824
Alw26I GTCTC 2 cut(s) 172, 450
AlwI GGATC 4 cut(s) 80, 692, 857, 937
AoxI GGCC 2 cut(s) 446, 797
ApeKI GCWGC 5 cut(s) 527, 562, 684, 857, 1280
ApoI RAATTY 2 cut(s) 967, 1036
AspLEI GCGC 3 cut(s) 22, 463, 1196
AspS9I GGNCC 4 cut(s) 446, 616, 1016, 1310
AsuC2I CCSGG 1 cut(s) 1343
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 3 cut(s) 616, 1016, 1310
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 2 cut(s) 50, 793
Bbv12I GWGCWC 2 cut(s) 50, 824
BbvI GCAGC 5 cut(s) 539, 549, 696, 844, 1267
BccI CCATC 1 cut(s) 655
BceAI ACGGC 2 cut(s) 433, 1196
BciVI GTATCC 1 cut(s) 929
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 1343
BcoDI GTCTC 2 cut(s) 172, 450
BfmI CTRYAG 2 cut(s) 525, 858
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 1081
BfuI GTATCC 1 cut(s) 929
BisI GCNGC 8 cut(s) 18, 42, 528, 563, 685, 797, 858, 1281
BlsI GCNGC 8 cut(s) 19, 43, 529, 564, 686, 798, 859, 1282
Bme1390I CCNGG 1 cut(s) 1343
Bme18I GGWCC 3 cut(s) 616, 1016, 1310
BmgT120I GGNCC 4 cut(s) 446, 616, 1016, 1310
BmiI GGNNCC 4 cut(s) 21, 618, 1311, 1312
BmrFI CCNGG 1 cut(s) 1343
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 3 cut(s) 376, 1136, 1192
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 1056
BpmI CTGGAG 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 1343
BsaAI YACGTR 2 cut(s) 398, 1338
BsaHI GRCGYC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 657, 847, 984
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 4 cut(s) 325, 652, 916, 1024
Bse3DI GCAATG 1 cut(s) 852
BseGI GGATG 4 cut(s) 496, 647, 751, 1262
BseLI CCNNNNNNNGG 3 cut(s) 657, 847, 984
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 4 cut(s) 325, 652, 916, 1024
BseRI GAGGAG 1 cut(s) 1275
BseXI GCAGC 5 cut(s) 539, 549, 696, 844, 1267
BseYI CCCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 3 cut(s) 17, 347, 461
BshFI GGCC 2 cut(s) 448, 799
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 50, 824
BsiSI CCGG 3 cut(s) 23, 36, 1342
BslFI GGGAC 1 cut(s) 1296
BslI CCNNNNNNNGG 3 cut(s) 657, 847, 984
BsmAI GTCTC 2 cut(s) 172, 450
BsmBI CGTCTC 2 cut(s) 172, 450
BsmFI GGGAC 1 cut(s) 1296
BsnI GGCC 2 cut(s) 448, 799
Bsp1286I GDGCHC 3 cut(s) 50, 793, 824
Bsp143I GATC 5 cut(s) 85, 336, 697, 862, 942
BspANI GGCC 2 cut(s) 448, 799
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 3 cut(s) 17, 347, 461
BspLI GGNNCC 4 cut(s) 21, 618, 1311, 1312
BspMAI CTGCAG 2 cut(s) 529, 862
BspMI ACCTGC 1 cut(s) 1081
BspPI GGATC 4 cut(s) 80, 692, 857, 937
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 4 cut(s) 325, 652, 916, 1024
BssAI RCCGGY 1 cut(s) 22
BssMI GATC 5 cut(s) 85, 336, 697, 862, 942
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 5 cut(s) 438, 443, 582, 758, 1238
BstACI GRCGYC 1 cut(s) 20
BstBAI YACGTR 2 cut(s) 398, 1338
BstC8I GCNNGC 5 cut(s) 24, 46, 465, 543, 630
BstDEI CTNAG 4 cut(s) 103, 145, 947, 1292
BstF5I GGATG 4 cut(s) 496, 647, 751, 1262
BstFNI CGCG 3 cut(s) 17, 347, 461
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 3 cut(s) 22, 463, 1196
BstKTI GATC 5 cut(s) 88, 339, 700, 865, 945
BstMAI GTCTC 2 cut(s) 172, 450
BstMBI GATC 5 cut(s) 85, 336, 697, 862, 942
BstMWI GCNNNNNNNGC 7 cut(s) 23, 50, 172, 533, 542, 571, 819
BstNSI RCATGY 1 cut(s) 545
BstPAI GACNNNNGTC 1 cut(s) 1056
BstSCI CCNGG 1 cut(s) 1341
BstSFI CTRYAG 2 cut(s) 525, 858
BstUI CGCG 3 cut(s) 17, 347, 461
BstV1I GCAGC 5 cut(s) 539, 549, 696, 844, 1267
BstX2I RGATCY 2 cut(s) 85, 862
BstXI CCANNNNNNTGG 3 cut(s) 511, 654, 1031
BstYI RGATCY 2 cut(s) 85, 862
BsuI GTATCC 1 cut(s) 929
BsuRI GGCC 2 cut(s) 448, 799
BtsCI GGATG 4 cut(s) 496, 647, 751, 1262
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 7 cut(s) 448, 578, 659, 681, 790, 909, 1031
BveI ACCTGC 1 cut(s) 1081
Cac8I GCNNGC 5 cut(s) 24, 46, 465, 543, 630
CfoI GCGC 3 cut(s) 22, 463, 1196
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 4 cut(s) 446, 616, 1016, 1310
CseI GACGC 2 cut(s) 353, 467
Csp6I GTAC 2 cut(s) 439, 1339
CviAII CATG 2 cut(s) 167, 542
CviQI GTAC 2 cut(s) 439, 1339
DdeI CTNAG 4 cut(s) 103, 145, 947, 1292
DinI GGCGCC 1 cut(s) 21
DpnI GATC 5 cut(s) 87, 338, 699, 864, 944
DpnII GATC 5 cut(s) 85, 336, 697, 862, 942
EaeI YGGCCR 1 cut(s) 797
EciI GGCGGA 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 2 cut(s) 50, 793
Eco32I GATATC 1 cut(s) 1353
Eco47I GGWCC 3 cut(s) 616, 1016, 1310
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 3 cut(s) 799, 1110, 1289
EcoICRI GAGCTC 1 cut(s) 48
EcoO109I RGGNCCY 2 cut(s) 1016, 1310
EcoRV GATATC 1 cut(s) 1353
EcoT38I GRGCYC 2 cut(s) 50, 793
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
Esp3I CGTCTC 2 cut(s) 172, 450
FaeI CATG 2 cut(s) 170, 545
FaqI GGGAC 1 cut(s) 1296
FatI CATG 2 cut(s) 166, 541
FbaI TGATCA 1 cut(s) 336
FblI GTMKAC 1 cut(s) 1367
Fnu4HI GCNGC 8 cut(s) 18, 42, 528, 563, 685, 797, 858, 1281
FokI GGATG 4 cut(s) 503, 634, 758, 1269
FriOI GRGCYC 2 cut(s) 50, 793
Fsp4HI GCNGC 8 cut(s) 18, 42, 528, 563, 685, 797, 858, 1281
FspI TGCGCA 1 cut(s) 1195
GlaI GCGC 3 cut(s) 21, 462, 1195
GluI GCNGC 8 cut(s) 18, 42, 528, 563, 685, 797, 858, 1281
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 448, 799
HapII CCGG 3 cut(s) 23, 36, 1342
HgaI GACGC 2 cut(s) 353, 467
HhaI GCGC 3 cut(s) 22, 463, 1196
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 2 cut(s) 170, 545
Hin6I GCGC 3 cut(s) 20, 461, 1194
HinP1I GCGC 3 cut(s) 20, 461, 1194
HincII GTYRAC 2 cut(s) 117, 1368
HindII GTYRAC 2 cut(s) 117, 1368
HinfI GANTC 1 cut(s) 1052
HpaII CCGG 3 cut(s) 23, 36, 1342
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 4 cut(s) 117, 679, 808, 1368
Hpy188I TCNGA 2 cut(s) 205, 1126
Hpy188III TCNNGA 5 cut(s) 379, 453, 701, 817, 1202
Hpy8I GTNNAC 4 cut(s) 117, 679, 808, 1368
HpyAV CCTTC 6 cut(s) 177, 376, 581, 585, 630, 1007
HpyCH4III ACNGT 5 cut(s) 438, 443, 582, 758, 1238
HpyCH4IV ACGT 3 cut(s) 397, 876, 1337
HpyCH4V TGCA 8 cut(s) 125, 434, 517, 527, 860, 909, 1209, 1275
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 50, 172, 533, 542, 571, 819
HpyF3I CTNAG 4 cut(s) 103, 145, 947, 1292
HpySE526I ACGT 3 cut(s) 397, 876, 1337
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 170, 545
HspAI GCGC 3 cut(s) 20, 461, 1194
KasI GGCGCC 1 cut(s) 19
KflI GGGWCCC 1 cut(s) 1310
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 5 cut(s) 85, 336, 697, 862, 942
LmnI GCTCC 3 cut(s) 53, 819, 1288
Lsp1109I GCAGC 5 cut(s) 539, 549, 696, 844, 1267
LweI GCATC 3 cut(s) 376, 1136, 1192
MaeII ACGT 3 cut(s) 397, 876, 1337
MaeIII GTNAC 2 cut(s) 358, 1176
MalI GATC 5 cut(s) 87, 338, 699, 864, 944
MboI GATC 5 cut(s) 85, 336, 697, 862, 942
MboII GAAGA 5 cut(s) 87, 90, 305, 596, 1295
MflI RGATCY 2 cut(s) 85, 862
MhlI GDGCHC 3 cut(s) 50, 793, 824
MluCI AATT 6 cut(s) 63, 98, 316, 373, 967, 1036
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 1046
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 2 cut(s) 980, 1250
MslI CAYNNNNRTG 2 cut(s) 652, 783
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 3 cut(s) 23, 36, 1342
MspR9I CCNGG 1 cut(s) 1343
MvnI CGCG 3 cut(s) 17, 347, 461
MwoI GCNNNNNNNGC 7 cut(s) 23, 50, 172, 533, 542, 571, 819
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 1 cut(s) 1343
NdeII GATC 5 cut(s) 85, 336, 697, 862, 942
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 170, 545
NlaIV GGNNCC 4 cut(s) 21, 618, 1311, 1312
NmeAIII GCCGAG 1 cut(s) 772
NmuCI GTSAC 1 cut(s) 358
NsbI TGCGCA 1 cut(s) 1195
NspI RCATGY 1 cut(s) 545
PaeI GCATGC 1 cut(s) 545
PaqCI CACCTGC 1 cut(s) 1081
PdiI GCCGGC 1 cut(s) 24
PkrI GCNGC 8 cut(s) 19, 43, 529, 564, 686, 798, 859, 1282
PleI GAGTC 1 cut(s) 1046
PluTI GGCGCC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 1046
Ppu21I YACGTR 2 cut(s) 398, 1338
PpuMI RGGWCCY 2 cut(s) 1016, 1310
PshAI GACNNNNGTC 1 cut(s) 1056
Psp124BI GAGCTC 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 876
Psp5II RGGWCCY 2 cut(s) 1016, 1310
PspFI CCCAGC 1 cut(s) 536
PspN4I GGNNCC 4 cut(s) 21, 618, 1311, 1312
PspPI GGNCC 4 cut(s) 446, 616, 1016, 1310
PspPPI RGGWCCY 2 cut(s) 1016, 1310
PstI CTGCAG 2 cut(s) 529, 862
PsuI RGATCY 2 cut(s) 85, 862
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 2 cut(s) 440, 1340
RsaNI GTAC 2 cut(s) 439, 1339
RseI CAYNNNNRTG 2 cut(s) 652, 783
SacI GAGCTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 1366
SaqAI TTAA 2 cut(s) 980, 1250
SatI GCNGC 8 cut(s) 18, 42, 528, 563, 685, 797, 858, 1281
Sau3AI GATC 5 cut(s) 85, 336, 697, 862, 942
Sau96I GGNCC 4 cut(s) 446, 616, 1016, 1310
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 1 cut(s) 1343
SduI GDGCHC 3 cut(s) 50, 793, 824
SfaNI GCATC 3 cut(s) 376, 1136, 1192
SfcI CTRYAG 2 cut(s) 525, 858
SfoI GGCGCC 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 3 cut(s) 616, 1016, 1310
SmiMI CAYNNNNRTG 2 cut(s) 652, 783
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SphI GCATGC 1 cut(s) 545
Sse9I AATT 6 cut(s) 63, 98, 316, 373, 967, 1036
SspDI GGCGCC 1 cut(s) 19
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 1341
TaaI ACNGT 5 cut(s) 438, 443, 582, 758, 1238
TaiI ACGT 3 cut(s) 400, 879, 1340
TaqI TCGA 3 cut(s) 1186, 1288, 1367
TasI AATT 6 cut(s) 63, 98, 316, 373, 967, 1036
TatI WGTACW 1 cut(s) 438
TauI GCSGC 3 cut(s) 20, 44, 799
Tru1I TTAA 2 cut(s) 980, 1250
Tru9I TTAA 2 cut(s) 980, 1250
TscAI CASTG 7 cut(s) 448, 585, 659, 681, 790, 916, 1031
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 5 cut(s) 527, 562, 684, 857, 1280
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 315, 432, 1026
TspGWI ACGGA 3 cut(s) 78, 855, 911
TspRI CASTG 7 cut(s) 448, 585, 659, 681, 790, 916, 1031
VpaK11BI GGWCC 3 cut(s) 616, 1016, 1310
XapI RAATTY 2 cut(s) 967, 1036
XceI RCATGY 1 cut(s) 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.