Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005545.1

Orthogroup ID

OG0008087

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1552

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005545.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 620 bp

gttatgagtgggatattggtcatttcagtggggcgcgacggccagatgtggactgcttcaggagcacttcgtttgggctatgccaaccagaggtcattgctgcagatccgttagccaacgttgataaagaaacacatatattgatgtattgcactggaggtatccgttgtgatgtatattccacgatcctaagacaacagggctttcaaaatttatacaccttaaaggggggtgtctctcattacctaaaaaatgaaggtcctgtccagtgggttgggaatttgtttgtgtttgactcccgtctttctctcccacctgctacctacaagcctgaagccataactgaaccaaacagagttgaagtttcagagaacaatacatttgccagatgctatgtatgtggtttagaagtctgcgagttacggcatcgaaactgcgcaaatcttgactgcaacctactttatttatgctgtatgaactgtgttgagaatttaagaggatgttgctgttcaaagtgcacaactgcttctcgacttagacctgttcttcagggtccccatagatatgaaaaatggcacacgtaccgggatttgatatcacaaagcaagtcgacagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rhodanese_C

Protein Analysis

205

Amino Acids

23.28

Weight (kDa)

7.56

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17850 AT1G17850
fragaria_vesca	FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210
malus_domestica	MD06G1237700.v1.1 MD14G1244500.v1.1
prunus_persica	Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1
pyrus_communis	pycom14g20560
rosa_chinensis	RchiOBHm_Chr7g0177381
rosa_laevigata	RLG00000005541
rosa_multiflora	Rmu_sc0005310.1_g000003 Rmu_sc0005545.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275900
rosa_rugosa	Rorug06G0405500
rosa_samantha	Rh7AG005100 Rh7BG005100 Rh7CG005200 Rh7DG004900
rosa_wichuraiana	Rw7G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc16I	TGCGCA	1 cut(s)	438
Acc36I	ACCTGC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	610
AccII	CGCG	1 cut(s)	36
AclI	AACGTT	1 cut(s)	119
AclWI	GGATC	2 cut(s)	100, 180
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	3 cut(s)	210, 279, 489
AcuI	CTGAAG	3 cut(s)	42, 353, 532
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	90, 227
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	3 cut(s)	208, 361, 512
AluBI	AGCT	1 cut(s)	616
AluI	AGCT	1 cut(s)	616
Alw21I	GWGCWC	2 cut(s)	67, 520
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	100, 180
AoxI	GGCC	1 cut(s)	40
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	3 cut(s)	210, 279, 489
AspLEI	GCGC	2 cut(s)	36, 439
AspS9I	GGNCC	2 cut(s)	259, 553
AsuC2I	CCSGG	1 cut(s)	586
AvaII	GGWCC	2 cut(s)	259, 553
BaeGI	GKGCMC	1 cut(s)	520
Bbv12I	GWGCWC	2 cut(s)	67, 520
BbvI	GCAGC	1 cut(s)	87
BceAI	ACGGC	2 cut(s)	55, 439
BciVI	GTATCC	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	586
Bme18I	GGWCC	2 cut(s)	259, 553
BmgT120I	GGNCC	2 cut(s)	259, 553
BmiI	GGNNCC	2 cut(s)	554, 555
BmrFI	CCNGG	1 cut(s)	586
BmsI	GCATC	2 cut(s)	379, 435
BoxI	GACNNNNGTC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	586
BsaAI	YACGTR	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 227
Bse1I	ACTGG	2 cut(s)	159, 267
Bse3DI	GCAATG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	90, 227
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	159, 267
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	67, 520
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	90, 227
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	67, 520
Bsp143I	GATC	2 cut(s)	105, 185
BspANI	GGCC	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	554, 555
BspMAI	CTGCAG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	100, 180
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	159, 267
BssMI	GATC	2 cut(s)	105, 185
Bst4CI	ACNGT	1 cut(s)	481
BstBAI	YACGTR	1 cut(s)	581
BstDEI	CTNAG	2 cut(s)	190, 535
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	36, 439
BstKTI	GATC	2 cut(s)	108, 188
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	105, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstPAI	GACNNNNGTC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	584
BstSFI	CTRYAG	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	33, 152, 274
BveI	ACCTGC	1 cut(s)	324
CfoI	GCGC	2 cut(s)	36, 439
Cfr13I	GGNCC	2 cut(s)	259, 553
Csp6I	GTAC	1 cut(s)	582
CviJI	RGCY	7 cut(s)	42, 78, 115, 203, 330, 337, 616
CviKI_1	RGCY	7 cut(s)	42, 78, 115, 203, 330, 337, 616
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	2 cut(s)	190, 535
DpnI	GATC	2 cut(s)	107, 187
DpnII	GATC	2 cut(s)	105, 185
EaeI	YGGCCR	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	596
Eco47I	GGWCC	2 cut(s)	259, 553
Eco57I	CTGAAG	3 cut(s)	42, 353, 532
EcoO109I	RGGNCCY	2 cut(s)	259, 553
EcoRV	GATATC	1 cut(s)	596
FaqI	GGGAC	1 cut(s)	539
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	101
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	2 cut(s)	35, 438
GluI	GCNGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	585
HhaI	GCGC	2 cut(s)	36, 439
Hin6I	GCGC	2 cut(s)	34, 437
HinP1I	GCGC	2 cut(s)	34, 437
HincII	GTYRAC	1 cut(s)	611
HindII	GTYRAC	1 cut(s)	611
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	585
Hpy166II	GTNNAC	3 cut(s)	51, 518, 611
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	3 cut(s)	60, 445, 530
Hpy8I	GTNNAC	3 cut(s)	51, 518, 611
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	2 cut(s)	119, 580
HpyCH4V	TGCA	4 cut(s)	103, 152, 452, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	190, 535
HpySE526I	ACGT	2 cut(s)	119, 580
HspAI	GCGC	2 cut(s)	34, 437
KflI	GGGWCCC	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	105, 185
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	2 cut(s)	379, 435
MaeII	ACGT	2 cut(s)	119, 580
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	2 cut(s)	107, 187
MboI	GATC	2 cut(s)	105, 185
MboII	GAAGA	1 cut(s)	538
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	67, 520
MluCI	AATT	3 cut(s)	210, 279, 489
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	84, 151, 490
MseI	TTAA	2 cut(s)	223, 493
MslI	CAYNNNNRTG	2 cut(s)	26, 563
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	586
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	2 cut(s)	105, 185
NlaIV	GGNNCC	2 cut(s)	554, 555
NsbI	TGCGCA	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	581
PpuMI	RGGWCCY	2 cut(s)	259, 553
PshAI	GACNNNNGTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	119
Psp5II	RGGWCCY	2 cut(s)	259, 553
PspN4I	GGNNCC	2 cut(s)	554, 555
PspPI	GGNCC	2 cut(s)	259, 553
PspPPI	RGGWCCY	2 cut(s)	259, 553
PstI	CTGCAG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
RseI	CAYNNNNRTG	2 cut(s)	26, 563
SalI	GTCGAC	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	223, 493
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	105, 185
Sau96I	GGNCC	2 cut(s)	259, 553
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	2 cut(s)	67, 520
SfaNI	GCATC	2 cut(s)	379, 435
SfcI	CTRYAG	1 cut(s)	101
SinI	GGWCC	2 cut(s)	259, 553
SmiMI	CAYNNNNRTG	2 cut(s)	26, 563
Sse9I	AATT	3 cut(s)	210, 279, 489
StyD4I	CCNGG	1 cut(s)	584
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	2 cut(s)	122, 583
TaqI	TCGA	3 cut(s)	429, 531, 610
TasI	AATT	3 cut(s)	210, 279, 489
Tru1I	TTAA	2 cut(s)	223, 493
Tru9I	TTAA	2 cut(s)	223, 493
TscAI	CASTG	3 cut(s)	33, 159, 274
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	269, 490, 581
TspGWI	ACGGA	2 cut(s)	98, 154
TspRI	CASTG	3 cut(s)	33, 159, 274
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	259, 553
XapI	RAATTY	3 cut(s)	210, 279, 489
XmiI	GTMKAC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.