Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008087

Physical Location & Seq

Genomic Coordinates Forward (+)

358105 .. 360945

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAAAAATTGCTTGCTAGCTCATAGAGTTTTGGTTTATGCGCAGTACAGTGGGCCGTCAAGAGACGCGCTTGCTTATGTTGAATGGGTGAGAGAGGATGAGAGATTTGCCAACTGCTTGGTGCAGATTTCTGCAGCACCAACTGGGCATGCCTTTCCAAAACTCAAGCTGCGGTATAAGCCTTCACTGGTTCAGTTAGAAGGAGGTATCAGTCATCTTCCTTTGCTGGACCCTTCAATGCGAGCTACACCTCTAGCACCATCCGAGTGGAGGAAAAGATTAGAGACAGCCAACGGCAGCACTACTGCTGATGCATCAACTCAAAATCCTAGACCAAACTATATTCTATTGGATGTTAGAAACGGTTATGAGTGGGATATTGGTCATTTCAGTGGGGCTCGACGGCCAGATGTGGACTGCTTCAGGAGCACTTCGTTTGGGCTATGCCAACCAGAGGTCATTGCTGCAGATCCGTTAGCCAACGTTGATAAAGAAACAGATATATTGATGTATTGCACTGGAGGTATCCGTTGTGATGTATATTCCACGATCCTAAGACAACAGGGCTTTCAAAATTTATACACCTTAAAGGGGGGTGTCTCTCATTACCTAAAAAATGAAGGTCCTGTCCAGTGGGTTGGGAATTTGTTTGTGTTTGACTCCCGTCTTTCTCTCCCACCTGCTACCTACAAGCGTGAAGCCATAACTGAACCAAACAGAGTTGAAGTTTCAGAGAACAATACATTTGCCAGATGCTATATATGTGGTTTTGAAGTCTGCGAGTTACGGCATCGAAACTGCGCAAATCTTGACTGCAACCTACTTTATCTATGCTGTATGAACTGTGTTGAGGATTTAAGAGGATGTTGCTGTTCAAAGTGCACAACTGCTCCTCGACTTAGACCTGTTCTTCAGGGTCCCCATAGATATGAAAAATGGCACACGTACCGGGATTTGATATCACAAAGCAAGTCGACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rhodanese_C

Protein Analysis

327

Amino Acids

36.96

Weight (kDa)

8.24

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	111 - 204	2.1e-09	Rhodanese-like domain
Rhodanese_C	PF12368	214 - 295	3.6e-15	Rhodanase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17850 AT1G17850
fragaria_vesca	FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210
malus_domestica	MD06G1237700.v1.1 MD14G1244500.v1.1
prunus_persica	Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1
pyrus_communis	pycom14g20560
rosa_chinensis	RchiOBHm_Chr7g0177381
rosa_laevigata	RLG00000005541
rosa_multiflora	Rmu_sc0005310.1_g000003 Rmu_sc0005545.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275900
rosa_rugosa	Rorug06G0405500
rosa_samantha	Rh7AG005100 Rh7BG005100 Rh7CG005200 Rh7DG004900
rosa_wichuraiana	Rw7G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	688
Acc16I	TGCGCA	2 cut(s)	42, 802
Acc36I	ACCTGC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	974
AccII	CGCG	1 cut(s)	68
AciI	CCGC	1 cut(s)	172
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	2 cut(s)	464, 544
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	574, 643
AcuI	CTGAAG	2 cut(s)	406, 896
AfaI	GTAC	2 cut(s)	47, 947
AfiI	CCNNNNNNNGG	3 cut(s)	270, 454, 591
AflIII	ACRYGT	1 cut(s)	942
AgsI	TTSAA	6 cut(s)	83, 237, 572, 725, 773, 876
AluBI	AGCT	4 cut(s)	20, 169, 245, 980
AluI	AGCT	4 cut(s)	20, 169, 245, 980
Alw21I	GWGCWC	2 cut(s)	431, 884
Alw26I	GTCTC	3 cut(s)	57, 278, 604
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	464, 544
AoxI	GGCC	2 cut(s)	53, 404
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	4 cut(s)	134, 169, 297, 464
ApoI	RAATTY	2 cut(s)	574, 643
AspLEI	GCGC	3 cut(s)	43, 70, 803
AspS9I	GGNCC	4 cut(s)	53, 229, 623, 917
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	229, 623, 917
BaeGI	GKGCMC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	2 cut(s)	431, 884
BbvI	GCAGC	4 cut(s)	146, 156, 309, 451
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	4 cut(s)	40, 310, 419, 803
BciVI	GTATCC	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	57, 278, 604
BfaI	CTAG	3 cut(s)	17, 254, 330
BfmI	CTRYAG	2 cut(s)	132, 465
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	4 cut(s)	135, 170, 298, 465
BlsI	GCNGC	4 cut(s)	136, 171, 299, 466
Bme1390I	CCNGG	1 cut(s)	950
Bme18I	GGWCC	3 cut(s)	229, 623, 917
BmgT120I	GGNCC	4 cut(s)	53, 229, 623, 917
BmiI	GGNNCC	3 cut(s)	231, 918, 919
BmrFI	CCNGG	1 cut(s)	950
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	4 cut(s)	301, 323, 743, 799
BmtI	GCTAGC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	153
BoxI	GACNNNNGTC	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	945
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 454, 591
Bse1I	ACTGG	4 cut(s)	148, 192, 523, 631
Bse3DI	GCAATG	1 cut(s)	459
BseGI	GGATG	4 cut(s)	103, 260, 358, 869
BseLI	CCNNNNNNNGG	3 cut(s)	270, 454, 591
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	4 cut(s)	148, 192, 523, 631
BseRI	GAGGAG	1 cut(s)	882
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	4 cut(s)	146, 156, 309, 451
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	55, 406
BsiHKAI	GWGCWC	2 cut(s)	431, 884
BsiSI	CCGG	1 cut(s)	949
BslFI	GGGAC	1 cut(s)	903
BslI	CCNNNNNNNGG	3 cut(s)	270, 454, 591
BsmAI	GTCTC	3 cut(s)	57, 278, 604
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	903
BsnI	GGCC	2 cut(s)	55, 406
Bsp1286I	GDGCHC	3 cut(s)	400, 431, 884
Bsp143I	GATC	2 cut(s)	469, 549
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	55, 406
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	231, 918, 919
BspMAI	CTGCAG	2 cut(s)	136, 469
BspMI	ACCTGC	1 cut(s)	688
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	464, 544
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	4 cut(s)	148, 192, 523, 631
BssMI	GATC	2 cut(s)	469, 549
Bst4CI	ACNGT	3 cut(s)	50, 365, 845
BstBAI	YACGTR	1 cut(s)	945
BstC8I	GCNNGC	5 cut(s)	14, 18, 72, 150, 243
BstDEI	CTNAG	2 cut(s)	554, 899
BstF5I	GGATG	4 cut(s)	103, 260, 358, 869
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	3 cut(s)	43, 70, 803
BstKTI	GATC	2 cut(s)	472, 552
BstMAI	GTCTC	3 cut(s)	57, 278, 604
BstMBI	GATC	2 cut(s)	469, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 426
BstNSI	RCATGY	1 cut(s)	152
BstPAI	GACNNNNGTC	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	2 cut(s)	132, 465
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	4 cut(s)	146, 156, 309, 451
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	3 cut(s)	118, 267, 638
BstYI	RGATCY	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	55, 406
BtsCI	GGATG	4 cut(s)	103, 260, 358, 869
BtsIMutI	CAGTG	5 cut(s)	55, 185, 397, 516, 638
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	5 cut(s)	14, 18, 72, 150, 243
CfoI	GCGC	3 cut(s)	43, 70, 803
Cfr13I	GGNCC	4 cut(s)	53, 229, 623, 917
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	46, 946
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	2 cut(s)	46, 946
DdeI	CTNAG	2 cut(s)	554, 899
DpnI	GATC	2 cut(s)	471, 551
DpnII	GATC	2 cut(s)	469, 549
EaeI	YGGCCR	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	960
Eco47I	GGWCC	3 cut(s)	229, 623, 917
Eco57I	CTGAAG	2 cut(s)	406, 896
EcoO109I	RGGNCCY	2 cut(s)	623, 917
EcoRV	GATATC	1 cut(s)	960
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	152
FaqI	GGGAC	1 cut(s)	903
FatI	CATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	974
Fnu4HI	GCNGC	4 cut(s)	135, 170, 298, 465
FokI	GGATG	4 cut(s)	110, 247, 365, 876
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	135, 170, 298, 465
FspBI	CTAG	3 cut(s)	17, 254, 330
FspI	TGCGCA	2 cut(s)	42, 802
GlaI	GCGC	3 cut(s)	42, 69, 802
GluI	GCNGC	4 cut(s)	135, 170, 298, 465
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	55, 406
HapII	CCGG	1 cut(s)	949
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	3 cut(s)	43, 70, 803
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	3 cut(s)	41, 68, 801
HinP1I	GCGC	3 cut(s)	41, 68, 801
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HinfI	GANTC	1 cut(s)	659
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	415, 882, 975
Hpy188I	TCNGA	2 cut(s)	265, 733
Hpy188III	TCNNGA	3 cut(s)	60, 424, 809
Hpy8I	GTNNAC	3 cut(s)	415, 882, 975
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	4 cut(s)	192, 194, 243, 614
HpyCH4III	ACNGT	3 cut(s)	50, 365, 845
HpyCH4IV	ACGT	2 cut(s)	483, 944
HpyCH4V	TGCA	7 cut(s)	124, 134, 314, 467, 516, 816, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 426
HpyF3I	CTNAG	2 cut(s)	554, 899
HpySE526I	ACGT	2 cut(s)	483, 944
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	3 cut(s)	41, 68, 801
KflI	GGGWCCC	1 cut(s)	917
Kzo9I	GATC	2 cut(s)	469, 549
LmnI	GCTCC	2 cut(s)	426, 895
Lsp1109I	GCAGC	4 cut(s)	146, 156, 309, 451
LweI	GCATC	4 cut(s)	301, 323, 743, 799
MaeI	CTAG	3 cut(s)	17, 254, 330
MaeII	ACGT	2 cut(s)	483, 944
MaeIII	GTNAC	1 cut(s)	783
MalI	GATC	2 cut(s)	471, 551
MboI	GATC	2 cut(s)	469, 549
MboII	GAAGA	2 cut(s)	209, 902
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	400, 431, 884
MluCI	AATT	3 cut(s)	7, 574, 643
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	9 cut(s)	88, 197, 261, 264, 448, 515, 844, 854, 903
Mph1103I	ATGCAT	1 cut(s)	316
MseI	TTAA	2 cut(s)	587, 857
MslI	CAYNNNNRTG	3 cut(s)	265, 390, 927
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	1 cut(s)	950
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	178, 426
NciI	CCSGG	1 cut(s)	950
NdeII	GATC	2 cut(s)	469, 549
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	3 cut(s)	231, 918, 919
NsbI	TGCGCA	2 cut(s)	42, 802
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	136, 171, 299, 466
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
Ppu21I	YACGTR	1 cut(s)	945
PpuMI	RGGWCCY	2 cut(s)	623, 917
PshAI	GACNNNNGTC	1 cut(s)	663
Psp1406I	AACGTT	1 cut(s)	483
Psp5II	RGGWCCY	2 cut(s)	623, 917
PspN4I	GGNNCC	3 cut(s)	231, 918, 919
PspPI	GGNCC	4 cut(s)	53, 229, 623, 917
PspPPI	RGGWCCY	2 cut(s)	623, 917
PstI	CTGCAG	2 cut(s)	136, 469
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	47, 947
RsaNI	GTAC	2 cut(s)	46, 946
RseI	CAYNNNNRTG	3 cut(s)	265, 390, 927
SalI	GTCGAC	1 cut(s)	973
SaqAI	TTAA	2 cut(s)	587, 857
SatI	GCNGC	4 cut(s)	135, 170, 298, 465
Sau3AI	GATC	2 cut(s)	469, 549
Sau96I	GGNCC	4 cut(s)	53, 229, 623, 917
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	3 cut(s)	400, 431, 884
SfaNI	GCATC	4 cut(s)	301, 323, 743, 799
SfcI	CTRYAG	2 cut(s)	132, 465
SinI	GGWCC	3 cut(s)	229, 623, 917
SmiMI	CAYNNNNRTG	3 cut(s)	265, 390, 927
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	3 cut(s)	7, 574, 643
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	3 cut(s)	17, 254, 330
StyD4I	CCNGG	1 cut(s)	948
TaaI	ACNGT	3 cut(s)	50, 365, 845
TaiI	ACGT	2 cut(s)	486, 947
TaqI	TCGA	4 cut(s)	400, 793, 895, 974
TasI	AATT	3 cut(s)	7, 574, 643
TatI	WGTACW	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	587, 857
Tru9I	TTAA	2 cut(s)	587, 857
TscAI	CASTG	5 cut(s)	55, 192, 397, 523, 638
TseI	GCWGC	4 cut(s)	134, 169, 297, 464
TspDTI	ATGAA	4 cut(s)	17, 633, 854, 945
TspGWI	ACGGA	2 cut(s)	462, 518
TspRI	CASTG	5 cut(s)	55, 192, 397, 523, 638
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	3 cut(s)	229, 623, 917
XapI	RAATTY	2 cut(s)	574, 643
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	974
XspI	CTAG	3 cut(s)	17, 254, 330
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.