Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008087

Physical Location & Seq

Genomic Coordinates Reverse (-)

36882073 .. 36885089

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1237700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAGAGGGTGTTTTCCGGCGCCGGCGGTAATATCCGGTGCGTCGAGCTCCACAATTACTCAAATTGCTTTGGTGGGCAGAAGAAGGAAAGGTTCATTTGAATTCCCAGTCTGCTCCTCCGCCGCCCAAACAGCTTGCCTTTCTTTCTCAAATCACAACGAGCATAACCAGCAGAGGCAAAGACAATGCCTTTGGTTACCAGAAAGAAGCAAACGGAAAGGCGGACGTCGTGCGGGCGTTGGCTTGCAATGCAAGTGCAGCTACGAAAGCAGGGGAGAGGATAACGAATGGGTGGTGGTGAATTTCTACCATTTCGTAATGATCAAAGACGCAGAGGCGGTGGCGGTGGCGGCCAAGCATCCCTCTTTCGTAGAGGGTCTCAACATACGTGGGCGGATATATCTGAATGAACAAGGGATAATGCACAGTGGGCTGTCGAGAGATGCACTTGTTGCATATTTTGAATGGTTAAGAGGAAACGAGAGATTTTCCGGCATCCTAGTGCAGGTTTCTGCAGCAACAAATGGCCATTGCGGTATAAGCCCTCACTGGTTCAGATTGGAAGCAGTGAATACAACTATTGATGTGTCAAATGACAATCTTAAAAGAAACCAGATTTTATTGGAGGTGAGAAATGGTTATGAATGGGATATTGGTCATTTTGAAGGGGCTCGGCGACCTGATATGGACTGCTTTAGGAGCACTTCGTTGGGTTTTCGCAACCAGAGATGTATTGATGTATTGCACTGGAGATATCCGTTGCAATGTATATTCCACAATCCTAAGACAAAAGGGCTTTCAACATTTATACACATAAAGGAAGGTGTTTATCATTATCTGGAGAATGAAGGTCCTGTCCAGTGGATTGGGAATTTGTTCGTATTTGACTCTCGTCTCTCTCTCCCACCGCCTGCCTACAAGCATGAAGCCATGACTAAAGCAAGCACACATGAAGATCCAGAGAATAATACATTCGCTAGGTGCTATACGTGTGGTTCACAAGTCTGTGAGTTAAGGCATAGAAACAGTGCAAATCTCGAGTGCAATCTGCTGTATCTATGCTGTTTGAACCGTGTGAAGTATTTAAGAGGACGTTGCTGTTCCAACTGCACGACTGCTCCTCGACCTAGACCTGTTCTTCCAAGGTTCCAGAGGTACAAGAAGTGGCACACGTATCAAGATTCGATTCCACAGAGCCAGTTGATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rhodanese_C

Protein Analysis

404

Amino Acids

46.08

Weight (kDa)

9.16

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0176_N	PF17773	97 - 173	1.5e-07	UPF0176 acylphosphatase like domain
Rhodanese_C	PF12368	290 - 371	1e-11	Rhodanase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17850 AT1G17850
fragaria_vesca	FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210 FvH4_5g18210
malus_domestica	MD06G1237700.v1.1 MD14G1244500.v1.1
prunus_persica	Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1 Prupe.5G242000_v2.0.a1
pyrus_communis	pycom14g20560
rosa_chinensis	RchiOBHm_Chr7g0177381
rosa_laevigata	RLG00000005541
rosa_multiflora	Rmu_sc0005310.1_g000003 Rmu_sc0005545.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275900
rosa_rugosa	Rorug06G0405500
rosa_samantha	Rh7AG005100 Rh7BG005100 Rh7CG005200 Rh7DG004900
rosa_wichuraiana	Rw7G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	1204
AclWI	GGATC	1 cut(s)	950
AcoI	YGGCCR	2 cut(s)	351, 526
AcsI	RAATTY	3 cut(s)	101, 301, 871
AcyI	GRCGYC	2 cut(s)	20, 226
AfaI	GTAC	1 cut(s)	1157
AfiI	CCNNNNNNNGG	2 cut(s)	505, 1204
AflIII	ACRYGT	2 cut(s)	989, 1170
AgsI	TTSAA	5 cut(s)	101, 464, 665, 801, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	3 cut(s)	48, 134, 261
AluI	AGCT	3 cut(s)	48, 134, 261
Alw21I	GWGCWC	2 cut(s)	50, 704
Alw26I	GTCTC	2 cut(s)	383, 899
AlwI	GGATC	1 cut(s)	950
Ama87I	CYCGRG	1 cut(s)	1037
AoxI	GGCC	2 cut(s)	351, 526
ApeKI	GCWGC	2 cut(s)	258, 515
ApoI	RAATTY	3 cut(s)	101, 301, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	851
AsuHPI	GGTGA	2 cut(s)	310, 640
AvaI	CYCGRG	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	50, 673
Bbv12I	GWGCWC	2 cut(s)	50, 704
BbvI	GCAGC	2 cut(s)	270, 527
BccI	CCATC	1 cut(s)	1198
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	383, 899
BfaI	CTAG	3 cut(s)	500, 978, 1128
BfmI	CTRYAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	496
BisI	GCNGC	4 cut(s)	123, 259, 351, 516
BlsI	GCNGC	4 cut(s)	124, 260, 352, 517
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	1 cut(s)	1037
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	2 cut(s)	21, 1148
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	3 cut(s)	367, 433, 504
BmuI	ACTGGG	1 cut(s)	101
BoxI	GACNNNNGTC	1 cut(s)	891
BpmI	CTGGAG	2 cut(s)	769, 860
BsaAI	YACGTR	3 cut(s)	389, 990, 1173
BsaHI	GRCGYC	2 cut(s)	20, 226
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	1142
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	1102, 1132
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 1204
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	5 cut(s)	107, 554, 752, 859, 1198
Bse3DI	GCAATG	3 cut(s)	254, 529, 770
BseDI	CCNNGG	1 cut(s)	1142
BseGI	GGATG	2 cut(s)	358, 495
BseLI	CCNNNNNNNGG	2 cut(s)	505, 1204
BseMI	GCAATG	3 cut(s)	254, 529, 770
BseNI	ACTGG	5 cut(s)	107, 554, 752, 859, 1198
BseRI	GAGGAG	2 cut(s)	106, 1110
BseXI	GCAGC	2 cut(s)	270, 527
BsgI	GTGCAG	3 cut(s)	277, 524, 1093
BshFI	GGCC	2 cut(s)	353, 528
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	50, 704
BsiHKCI	CYCGRG	1 cut(s)	1037
BsiSI	CCGG	4 cut(s)	17, 23, 36, 492
BslI	CCNNNNNNNGG	2 cut(s)	505, 1204
BsmAI	GTCTC	2 cut(s)	383, 899
BsmBI	CGTCTC	1 cut(s)	899
BsnI	GGCC	2 cut(s)	353, 528
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	1037
Bsp1286I	GDGCHC	3 cut(s)	50, 673, 704
Bsp143I	GATC	2 cut(s)	321, 955
BspANI	GGCC	2 cut(s)	353, 528
BspLI	GGNNCC	2 cut(s)	21, 1148
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	3 cut(s)	254, 529, 770
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	5 cut(s)	107, 554, 752, 859, 1198
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	1142
BssMI	GATC	2 cut(s)	321, 955
BssNI	GRCGYC	2 cut(s)	20, 226
BssT1I	CCWWGG	1 cut(s)	1142
Bst4CI	ACNGT	3 cut(s)	428, 1028, 1073
BstACI	GRCGYC	2 cut(s)	20, 226
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBAI	YACGTR	3 cut(s)	389, 990, 1173
BstC8I	GCNNGC	6 cut(s)	24, 136, 235, 245, 912, 943
BstDEI	CTNAG	1 cut(s)	783
BstEII	GGTNACC	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	358, 495
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	324, 958
BstMAI	GTCTC	2 cut(s)	383, 899
BstMBI	GATC	2 cut(s)	321, 955
BstPAI	GACNNNNGTC	1 cut(s)	891
BstPI	GGTNACC	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	270, 527
BstX2I	RGATCY	1 cut(s)	955
BstXI	CCANNNNNNTGG	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	955
BsuRI	GGCC	2 cut(s)	353, 528
BtsCI	GGATG	2 cut(s)	358, 495
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	6 cut(s)	433, 547, 573, 745, 866, 1033
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	6 cut(s)	24, 136, 235, 245, 912, 943
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	851
CseI	GACGC	2 cut(s)	30, 338
Csp6I	GTAC	1 cut(s)	1156
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	3 cut(s)	923, 931, 950
CviQI	GTAC	1 cut(s)	1156
DdeI	CTNAG	1 cut(s)	783
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	2 cut(s)	323, 957
DpnII	GATC	2 cut(s)	321, 955
EaeI	YGGCCR	2 cut(s)	351, 526
EciI	GGCGGA	3 cut(s)	109, 237, 409
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	1142
Eco24I	GRGCYC	2 cut(s)	50, 673
Eco31I	GGTCTC	1 cut(s)	383
Eco32I	GATATC	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	1037
Eco91I	GGTNACC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	851
EcoO65I	GGTNACC	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	1142
EcoT38I	GRGCYC	2 cut(s)	50, 673
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	1142
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	3 cut(s)	926, 934, 953
FatI	CATG	3 cut(s)	922, 930, 949
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	123, 259, 351, 516
FokI	GGATG	2 cut(s)	345, 482
FriOI	GRGCYC	2 cut(s)	50, 673
Fsp4HI	GCNGC	4 cut(s)	123, 259, 351, 516
FspBI	CTAG	3 cut(s)	500, 978, 1128
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	4 cut(s)	123, 259, 351, 516
GsuI	CTGGAG	2 cut(s)	769, 860
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	353, 528
HapII	CCGG	4 cut(s)	17, 23, 36, 492
HgaI	GACGC	2 cut(s)	30, 338
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	2 cut(s)	20, 226
Hin1II	CATG	3 cut(s)	926, 934, 953
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	3 cut(s)	887, 1181, 1186
HpaII	CCGG	4 cut(s)	17, 23, 36, 492
HphI	GGTGA	2 cut(s)	310, 640
Hpy166II	GTNNAC	1 cut(s)	998
Hpy188I	TCNGA	2 cut(s)	405, 557
Hpy188III	TCNNGA	6 cut(s)	438, 839, 959, 1037, 1150, 1178
Hpy8I	GTNNAC	1 cut(s)	998
Hpy99I	CGWCG	2 cut(s)	46, 231
HpyAV	CCTTC	4 cut(s)	78, 659, 815, 842
HpyCH4III	ACNGT	3 cut(s)	428, 1028, 1073
HpyCH4IV	ACGT	5 cut(s)	226, 388, 989, 1093, 1172
HpyF3I	CTNAG	1 cut(s)	783
HpySE526I	ACGT	5 cut(s)	226, 388, 989, 1093, 1172
Hsp92I	GRCGYC	2 cut(s)	20, 226
Hsp92II	CATG	3 cut(s)	926, 934, 953
HspAI	GCGC	1 cut(s)	20
KasI	GGCGCC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	321, 955
LmnI	GCTCC	4 cut(s)	53, 119, 699, 1123
Lsp1109I	GCAGC	2 cut(s)	270, 527
LweI	GCATC	3 cut(s)	367, 433, 504
MaeI	CTAG	3 cut(s)	500, 978, 1128
MaeII	ACGT	5 cut(s)	226, 388, 989, 1093, 1172
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	2 cut(s)	323, 957
MboI	GATC	2 cut(s)	321, 955
MboII	GAAGA	3 cut(s)	93, 965, 1130
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	3 cut(s)	50, 673, 704
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	5 cut(s)	54, 63, 101, 301, 871
MluNI	TGGCCA	1 cut(s)	528
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	1 cut(s)	1128
Mox20I	TGGCCA	1 cut(s)	528
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	875
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	4 cut(s)	470, 603, 1013, 1085
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	528
MspI	CCGG	4 cut(s)	17, 23, 36, 492
NaeI	GCCGGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	20
NdeII	GATC	2 cut(s)	321, 955
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	926, 934, 953
NlaIV	GGNNCC	2 cut(s)	21, 1148
NmeAIII	GCCGAG	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	1037
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	2 cut(s)	1181, 1186
PflMI	CCANNNNNTGG	1 cut(s)	1204
PkrI	GCNGC	4 cut(s)	124, 260, 352, 517
PleI	GAGTC	1 cut(s)	881
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	881
Ppu21I	YACGTR	3 cut(s)	389, 990, 1173
PpuMI	RGGWCCY	1 cut(s)	851
PshAI	GACNNNNGTC	1 cut(s)	891
Psp124BI	GAGCTC	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	851
PspEI	GGTNACC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	21, 1148
PspPI	GGNCC	1 cut(s)	851
PspPPI	RGGWCCY	1 cut(s)	851
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	955
RsaI	GTAC	1 cut(s)	1157
RsaNI	GTAC	1 cut(s)	1156
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	470, 603, 1013, 1085
SatI	GCNGC	4 cut(s)	123, 259, 351, 516
Sau3AI	GATC	2 cut(s)	321, 955
Sau96I	GGNCC	1 cut(s)	851
SchI	GAGTC	1 cut(s)	881
SduI	GDGCHC	3 cut(s)	50, 673, 704
SfaNI	GCATC	3 cut(s)	367, 433, 504
SfcI	CTRYAG	1 cut(s)	513
SfoI	GGCGCC	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	1037
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	851
SlaI	CTCGAG	1 cut(s)	1037
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	1037
SmoI	CTYRAG	1 cut(s)	1037
Sse9I	AATT	5 cut(s)	54, 63, 101, 301, 871
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	3 cut(s)	500, 978, 1128
SstI	GAGCTC	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	1142
TaaI	ACNGT	3 cut(s)	428, 1028, 1073
TaiI	ACGT	5 cut(s)	229, 391, 992, 1096, 1175
TaqI	TCGA	5 cut(s)	44, 437, 1038, 1123, 1184
TasI	AATT	5 cut(s)	54, 63, 101, 301, 871
TauI	GCSGC	2 cut(s)	125, 353
TfiI	GAWTC	2 cut(s)	1181, 1186
Tru1I	TTAA	4 cut(s)	470, 603, 1013, 1085
Tru9I	TTAA	4 cut(s)	470, 603, 1013, 1085
TscAI	CASTG	6 cut(s)	433, 554, 573, 752, 866, 1033
TseI	GCWGC	2 cut(s)	258, 515
TspDTI	ATGAA	6 cut(s)	84, 423, 657, 861, 939, 966
TspGWI	ACGGA	2 cut(s)	229, 747
TspRI	CASTG	6 cut(s)	433, 554, 573, 752, 866, 1033
Van91I	CCANNNNNTGG	1 cut(s)	1204
VpaK11BI	GGWCC	1 cut(s)	851
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	101, 301, 871
XhoI	CTCGAG	1 cut(s)	1037
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	3 cut(s)	500, 978, 1128
ZraI	GACGTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.