Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Reverse (-)

6206871 .. 6209528

Gene Structure 2658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCCGGAGCAGCCAAAGAAAGTTGCTGATAGGTATCTCAAGCAAGAGGTTCTTGGGCAAGGTACCTATGGAGTCGTCTTCAAAGCCACTGATACTAAGACGGAACAAACTGTAGCAATTAAGAAGATAAGGCTTGGTAAACAAAGAGAAGGTGTAAATATTACAGCTCTCAGAGAAATCAAAATGCTCAAAGAGCTAAAGCATCCTCATATTATTCTGCTCATTGATGCATTTCCTCACAAGGAAAACTTGCATCTTGTCTTTGAGTTCATGGAGACTGACCTCGAAGCAGTTATTCGCGATTCTAACATTTTCCTCTCACCCGCCGACATTAAATCCTACCTCCTAATGACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTTGCACAGGGATATGAAGCCAAATAACTTGTTAATAGGAGTTGATGGACAGCTTAAGCTTGCAGATTTTGGCTTAGCACGTATATTTGGTAGTCCAAATCGTAAGTTTACCCACCAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGTTGATGTTTGGGCCGTTGCCTGCATATTCGCCGAACTTCTACTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGCAGATCAGTGGCCGGATTTAACAAAGCTTCCAGATTATGTAGAGTATCAATTTGTCCCTGCACCGTCTCTACGTTCTTTATTCCCAGCAGTTAGTGATGATGCTCTCGACTTGTTGTCCAAAATGTTTACCTATGACCCAAAGGCTAGAATTTCCATTAAGCAGGCTCTAGAACACAGGTACTTCACTTCTGCACCTGCTCCTACTGACCCGGCTAAGCTCCCAAAGCCCGTTCCTAAGCAGGATGGTAAATCATCTTACGGTAAACATGAGGCCATTACAGTGCAATCACCACCACGTAAGCTTAGAAGAGTGATGCCTGAGCGTGGGAGGGTTGATAGTTTGAAGTCTCATGTTGACAAGGATCAACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCAAACAGGCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAGTTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

391

Amino Acids

44.53

Weight (kDa)

9.47

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 292	9.9e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	15 - 205	9.4e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
Acc36I	ACCTGC	1 cut(s)	895
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	300
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	1062
AcoI	YGGCCR	1 cut(s)	701
AcsI	RAATTY	1 cut(s)	840
AcuI	CTGAAG	2 cut(s)	614, 1166
AdeI	CACNNNGTG	1 cut(s)	508
AfaI	GTAC	3 cut(s)	64, 524, 872
AfiI	CCNNNNNNNGG	1 cut(s)	1016
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	82, 1036
AhdI	GACNNNNNGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	504
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	7 cut(s)	167, 196, 442, 448, 718, 910, 994
AluI	AGCT	7 cut(s)	167, 196, 442, 448, 718, 910, 994
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	269, 762, 1044
AlwI	GGATC	1 cut(s)	1062
AoxI	GGCC	4 cut(s)	582, 701, 963, 1112
ApeKI	GCWGC	3 cut(s)	10, 566, 671
ApoI	RAATTY	1 cut(s)	840
Asp718I	GGTACC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	902
AsuHPI	GGTGA	3 cut(s)	312, 972, 1114
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	22, 553, 658
BccI	CCATC	4 cut(s)	428, 513, 929, 1094
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	3 cut(s)	269, 762, 1044
BfaI	CTAG	3 cut(s)	516, 837, 860
BfmI	CTRYAG	2 cut(s)	111, 567
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	1136
BisI	GCNGC	3 cut(s)	11, 567, 672
BlpI	GCTNAGC	3 cut(s)	463, 906, 1095
BlsI	GCNGC	3 cut(s)	12, 568, 673
Bme1390I	CCNGG	2 cut(s)	506, 902
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	506, 902
BmsI	GCATC	5 cut(s)	211, 217, 262, 781, 996
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	927, 1011
Bpu1102I	GCTNAGC	3 cut(s)	463, 906, 1095
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	902
BsaAI	YACGTR	2 cut(s)	470, 989
BsaBI	GATNNNNATC	2 cut(s)	33, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	1016
Bse1I	ACTGG	2 cut(s)	1125, 1171
Bse8I	GATNNNNATC	2 cut(s)	33, 648
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	3 cut(s)	202, 940, 1086
BseJI	GATNNNNATC	2 cut(s)	33, 648
BseLI	CCNNNNNNNGG	1 cut(s)	1016
BseMII	CTCAG	3 cut(s)	184, 1002, 1086
BseNI	ACTGG	2 cut(s)	1125, 1171
BseXI	GCAGC	3 cut(s)	22, 553, 658
BseYI	CCCAGC	1 cut(s)	775
BsgI	GTGCAG	2 cut(s)	735, 867
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	584, 703, 965, 1114
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	3 cut(s)	5, 704, 902
BslFI	GGGAC	2 cut(s)	694, 731
BslI	CCNNNNNNNGG	1 cut(s)	1016
BsmAI	GTCTC	3 cut(s)	269, 762, 1044
BsmBI	CGTCTC	1 cut(s)	762
BsmFI	GGGAC	2 cut(s)	694, 731
BsnI	GGCC	4 cut(s)	584, 703, 965, 1114
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
Bsp1720I	GCTNAGC	3 cut(s)	463, 906, 1095
Bsp68I	TCGCGA	1 cut(s)	300
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	4 cut(s)	584, 703, 965, 1114
BspCNI	CTCAG	3 cut(s)	183, 1003, 1087
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	1062
BspT107I	GGYRCC	1 cut(s)	62
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	1125, 1171
BssMI	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	5 cut(s)	112, 641, 756, 953, 973
Bst6I	CTCTTC	2 cut(s)	994, 1142
BstAFI	CTTAAG	1 cut(s)	443
BstBAI	YACGTR	2 cut(s)	470, 989
BstC8I	GCNNGC	3 cut(s)	450, 592, 855
BstDEI	CTNAG	8 cut(s)	96, 170, 463, 906, 927, 995, 1011, 1095
BstF5I	GGATG	3 cut(s)	202, 940, 1086
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	5 cut(s)	652, 697, 1057, 1139, 1162
BstMAI	GTCTC	3 cut(s)	269, 762, 1044
BstMBI	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 193, 916
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	504, 900
BstSFI	CTRYAG	2 cut(s)	111, 567
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	22, 553, 658
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	1136
BstYI	RGATCY	1 cut(s)	1136
BsuRI	GGCC	4 cut(s)	584, 703, 965, 1114
BtsCI	GGATG	3 cut(s)	202, 940, 1086
BtsIMutI	CAGTG	5 cut(s)	87, 646, 704, 978, 1132
BtuMI	TCGCGA	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	3 cut(s)	450, 592, 855
Cfr13I	GGNCC	1 cut(s)	582
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	63, 523, 871
CviAII	CATG	4 cut(s)	271, 959, 1043, 1069
CviQI	GTAC	3 cut(s)	63, 523, 871
DdeI	CTNAG	8 cut(s)	96, 170, 463, 906, 927, 995, 1011, 1095
DpnI	GATC	5 cut(s)	651, 696, 1056, 1138, 1161
DpnII	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
DraI	TTTAAA	1 cut(s)	358
DraIII	CACNNNGTG	1 cut(s)	508
DriI	GACNNNNNGTC	1 cut(s)	805
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	2 cut(s)	994, 1142
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	2 cut(s)	994, 1142
Eco57I	CTGAAG	2 cut(s)	614, 1166
EcoRII	CCWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	762
FaeI	CATG	4 cut(s)	274, 962, 1046, 1072
FalI	AAGNNNNNCTT	4 cut(s)	36, 68, 233, 265
FaqI	GGGAC	2 cut(s)	694, 731
FatI	CATG	4 cut(s)	270, 958, 1042, 1068
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	11, 567, 672
FokI	GGATG	3 cut(s)	189, 947, 1073
Fsp4HI	GCNGC	3 cut(s)	11, 567, 672
FspBI	CTAG	3 cut(s)	516, 837, 860
GluI	GCNGC	3 cut(s)	11, 567, 672
GsaI	CCCAGC	1 cut(s)	779
HaeIII	GGCC	4 cut(s)	584, 703, 965, 1114
HapII	CCGG	3 cut(s)	5, 704, 902
Hin1II	CATG	4 cut(s)	274, 962, 1046, 1072
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HindIII	AAGCTT	3 cut(s)	446, 716, 992
HinfI	GANTC	2 cut(s)	72, 302
HpaII	CCGG	3 cut(s)	5, 704, 902
HphI	GGTGA	3 cut(s)	312, 972, 1114
Hpy166II	GTNNAC	5 cut(s)	140, 498, 819, 956, 1048
Hpy188I	TCNGA	2 cut(s)	173, 1146
Hpy188III	TCNNGA	5 cut(s)	299, 722, 797, 860, 1163
Hpy8I	GTNNAC	5 cut(s)	140, 498, 819, 956, 1048
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	5 cut(s)	112, 641, 756, 953, 973
HpyCH4IV	ACGT	3 cut(s)	469, 763, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 193, 916
HpyF3I	CTNAG	8 cut(s)	96, 170, 463, 906, 927, 995, 1011, 1095
HpySE526I	ACGT	3 cut(s)	469, 763, 988
Hsp92II	CATG	4 cut(s)	274, 962, 1046, 1072
KpnI	GGTACC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
LmnI	GCTCC	3 cut(s)	7, 895, 915
Lsp1109I	GCAGC	3 cut(s)	22, 553, 658
LweI	GCATC	5 cut(s)	211, 217, 262, 781, 996
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	3 cut(s)	516, 837, 860
MaeII	ACGT	3 cut(s)	469, 763, 988
MalI	GATC	5 cut(s)	651, 696, 1056, 1138, 1161
MboI	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
MboII	GAAGA	5 cut(s)	70, 136, 620, 1011, 1159
MflI	RGATCY	1 cut(s)	1136
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	4 cut(s)	117, 653, 740, 840
MlyI	GAGTC	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	8 cut(s)	120, 333, 357, 422, 444, 656, 710, 849
MslI	CAYNNNNRTG	1 cut(s)	971
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	3 cut(s)	5, 704, 902
MspR9I	CCNGG	2 cut(s)	506, 902
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	10, 193, 916
NciI	CCSGG	1 cut(s)	902
NdeII	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
NlaIII	CATG	4 cut(s)	274, 962, 1046, 1072
NlaIV	GGNNCC	1 cut(s)	64
NruI	TCGCGA	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	895
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	12, 568, 673
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	2 cut(s)	470, 989
Psp6I	CCWGG	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	582
PsrI	GAACNNNNNNTAC	2 cut(s)	597, 629
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	1136
RruI	TCGCGA	1 cut(s)	300
RsaI	GTAC	3 cut(s)	64, 524, 872
RsaNI	GTAC	3 cut(s)	63, 523, 871
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	8 cut(s)	120, 333, 357, 422, 444, 656, 710, 849
SatI	GCNGC	3 cut(s)	11, 567, 672
Sau3AI	GATC	5 cut(s)	649, 694, 1054, 1136, 1159
Sau96I	GGNCC	1 cut(s)	582
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	506, 902
SduI	GDGCHC	1 cut(s)	532
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	5 cut(s)	211, 217, 262, 781, 996
SfcI	CTRYAG	2 cut(s)	111, 567
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	3 cut(s)	38, 443, 1163
SmoI	CTYRAG	3 cut(s)	38, 443, 1163
Sse9I	AATT	4 cut(s)	117, 653, 740, 840
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	2 cut(s)	160, 666
SspMI	CTAG	3 cut(s)	516, 837, 860
StyD4I	CCNGG	2 cut(s)	504, 900
TaaI	ACNGT	5 cut(s)	112, 641, 756, 953, 973
TaiI	ACGT	3 cut(s)	472, 766, 991
TaqI	TCGA	3 cut(s)	285, 798, 1158
TasI	AATT	4 cut(s)	117, 653, 740, 840
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	8 cut(s)	120, 333, 357, 422, 444, 656, 710, 849
Tru9I	TTAA	8 cut(s)	120, 333, 357, 422, 444, 656, 710, 849
TscAI	CASTG	5 cut(s)	94, 646, 704, 978, 1132
TseI	GCWGC	3 cut(s)	10, 566, 671
TspDTI	ATGAA	2 cut(s)	259, 419
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	5 cut(s)	94, 646, 704, 978, 1132
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	840
XbaI	TCTAGA	1 cut(s)	859
XspI	CTAG	3 cut(s)	516, 837, 860
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.