Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Reverse (-)

67242226 .. 67245156

Gene Structure 2931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGCGAGGTCGATTCATCGAAGAAAGTTGCAGATAGGTATCTGAAGCGCGAGGTCCTCGGTGAAGGTACCTATGGAGTCGTCTACAAAGCCATTGATACTCATACAGGACAGACAGTTGCTATCAAGAAGATTCGGGTTGGGAAGCAAAAGGAAGGGGTGAATGTTACAGCGCTTAGAGAGATTAAACTGCTAAAGGAGCTGAAAGATCCGAATATTATTGAGTTGATTGACGCGTTCCCCCATAAAGGAAACCTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTTGAAGCTGTTATACGTAACCATAATATAGTCCTTTCACCAGCAGATATAAAGTCGTATATTCAGATGACGCTAAAAGGACTTGCTTTTTGTCACAAGAAATGGGTTTTGCACAGGGATATGAAGCCCAACAACTTGTTGATAGGACCTAATGGACAGCTTAAACTTGCAGATTTTGGTTTAGCACGAGTATTTGGGAGTCCAGATCGCAGGTTCACTCATCAGGTCTTTGCTCGATGGTATAGAGCACCTGAGCTGTTATTTGGCACCAAACAATATGGACCTGGAGTGGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTCCTACGGCAACCATTTCTGCAGGGAACAAGTGATATTGATCAACTAGGAAAGATTTTTGCGGCTTTTGGGACTCCAACACCTTCTCAATGGCCTGATATGGTATACCTTCCTGATTATGTGGAATACCAGTATGCTCCACCATCTGCTTTGCGTAAAAGGTTTGCAATGGCTAGTGATGATGCCTTCGATTTGCTATCAAAGATGTTTACTTATGACCCAAAAGCTAGAATATCTGTGCAGCAGGCACTAGAGCACAGGTACTTTACATCTGCGCCATTACCTACAGATCCAGATAAGCTTCCAAGGCCTGCTCCAAAGAAGGAGTCCAGCAATTCTAAGGCTTCAGATTTCAATCCAAATGAGGGTCCTACTGTTTTGTCACCTCCAAGAAAGTCACGGAGAGTGATGCCAGAACGTGTGAATTTTGAAGGAAATGCACCCCAATCAGATAGGGTTGATGATCATGTTGGAGGCATCCGACAGGCTGCCGGTGAAAGTACAAGCAGGAATGAACCAGTGCCAATGTCCGTAGATTTTTCCATCTTTGGAGCAAAACCTCCGAATAGACCTACAATAAATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

401

Amino Acids

44.93

Weight (kDa)

9.29

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 294	5.6e-71	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 241	2.9e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	264, 489
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	68, 554
AccI	GTMKAC	2 cut(s)	84, 720
AccII	CGCG	2 cut(s)	51, 236
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	2 cut(s)	203, 899
AcsI	RAATTY	1 cut(s)	1039
AcuI	CTGAAG	2 cut(s)	65, 945
AfaI	GTAC	3 cut(s)	70, 878, 1117
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	248, 980
AflIII	ACRYGT	2 cut(s)	234, 1033
AgsI	TTSAA	3 cut(s)	293, 970, 1046
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	7 cut(s)	202, 296, 448, 544, 613, 842, 916
AluI	AGCT	7 cut(s)	202, 296, 448, 544, 613, 842, 916
Alw21I	GWGCWC	2 cut(s)	538, 873
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	203, 899
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	2 cut(s)	707, 923
ApeKI	GCWGC	4 cut(s)	590, 593, 856, 1103
ApoI	RAATTY	1 cut(s)	1039
ArsI	GACNNNNNNTTYG	4 cut(s)	360, 392, 926, 958
Asp718I	GGTACC	1 cut(s)	68
AspLEI	GCGC	3 cut(s)	51, 175, 892
AspS9I	GGNCC	5 cut(s)	55, 286, 434, 569, 983
AsuHPI	GGTGA	5 cut(s)	74, 172, 318, 990, 1121
AvaII	GGWCC	5 cut(s)	55, 286, 434, 569, 983
BanI	GGYRCC	2 cut(s)	68, 554
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	538, 873
BbvI	GCAGC	4 cut(s)	577, 605, 868, 1090
BccI	CCATC	3 cut(s)	519, 766, 1166
BceAI	ACGGC	1 cut(s)	638
BciT130I	CCWGG	1 cut(s)	573
BclI	TGATCA	2 cut(s)	655, 1078
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	4 cut(s)	662, 789, 843, 866
BfmI	CTRYAG	3 cut(s)	591, 635, 900
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	264, 489
BisI	GCNGC	5 cut(s)	591, 594, 678, 857, 1104
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	5 cut(s)	592, 595, 679, 858, 1105
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	5 cut(s)	55, 286, 434, 569, 983
BmgT120I	GGNCC	5 cut(s)	55, 286, 434, 569, 983
BmiI	GGNNCC	3 cut(s)	70, 556, 984
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	4 cut(s)	268, 787, 1014, 1101
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	305
BsaBI	GATNNNNATC	3 cut(s)	39, 654, 969
BsaJI	CCNNGG	2 cut(s)	58, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 980
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	2 cut(s)	745, 1133
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	3 cut(s)	39, 654, 969
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	58, 920
BseGI	GGATG	2 cut(s)	586, 1092
BseJI	GATNNNNATC	3 cut(s)	39, 654, 969
BseLI	CCNNNNNNNGG	2 cut(s)	248, 980
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	531, 600
BseNI	ACTGG	2 cut(s)	745, 1133
BseXI	GCAGC	4 cut(s)	577, 605, 868, 1090
BsgI	GTGCAG	1 cut(s)	875
Bsh1236I	CGCG	2 cut(s)	51, 236
BshFI	GGCC	2 cut(s)	709, 925
BshNI	GGYRCC	2 cut(s)	68, 554
BsiHKAI	GWGCWC	2 cut(s)	538, 873
BsiSI	CCGG	1 cut(s)	1107
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	2 cut(s)	248, 980
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	709, 925
Bsp1286I	GDGCHC	2 cut(s)	538, 873
Bsp143I	GATC	5 cut(s)	208, 493, 655, 904, 1078
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	2 cut(s)	709, 925
BspCNI	CTCAG	2 cut(s)	532, 601
BspFNI	CGCG	2 cut(s)	51, 236
BspLI	GGNNCC	3 cut(s)	70, 556, 984
BspMAI	CTGCAG	2 cut(s)	595, 639
BspMI	ACCTGC	2 cut(s)	264, 489
BspPI	GGATC	2 cut(s)	203, 899
BspT107I	GGYRCC	2 cut(s)	68, 554
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	1106
BsrI	ACTGG	2 cut(s)	745, 1133
BssAI	RCCGGY	1 cut(s)	1106
BssECI	CCNNGG	2 cut(s)	58, 920
BssMI	GATC	5 cut(s)	208, 493, 655, 904, 1078
BssNAI	GTATAC	1 cut(s)	721
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	920
Bst1107I	GTATAC	1 cut(s)	721
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	118, 991
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	861, 927
BstDEI	CTNAG	4 cut(s)	176, 540, 609, 954
BstF5I	GGATG	2 cut(s)	586, 1092
BstFNI	CGCG	2 cut(s)	51, 236
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	3 cut(s)	51, 175, 892
BstKTI	GATC	5 cut(s)	211, 496, 658, 907, 1081
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	5 cut(s)	208, 493, 655, 904, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 922
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	3 cut(s)	591, 635, 900
BstSNI	TACGTA	1 cut(s)	305
BstUI	CGCG	2 cut(s)	51, 236
BstV1I	GCAGC	4 cut(s)	577, 605, 868, 1090
BstX2I	RGATCY	2 cut(s)	208, 904
BstYI	RGATCY	2 cut(s)	208, 904
BstZ17I	GTATAC	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	709, 925
BtsCI	GGATG	2 cut(s)	586, 1092
BtsIMutI	CAGTG	1 cut(s)	1140
BveI	ACCTGC	2 cut(s)	264, 489
Cac8I	GCNNGC	2 cut(s)	861, 927
CfoI	GCGC	3 cut(s)	51, 175, 892
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr13I	GGNCC	5 cut(s)	55, 286, 434, 569, 983
CseI	GACGC	2 cut(s)	242, 367
Csp6I	GTAC	3 cut(s)	69, 877, 1116
CviAII	CATG	2 cut(s)	277, 1082
CviQI	GTAC	3 cut(s)	69, 877, 1116
DdeI	CTNAG	4 cut(s)	176, 540, 609, 954
DpnI	GATC	5 cut(s)	210, 495, 657, 906, 1080
DpnII	GATC	5 cut(s)	208, 493, 655, 904, 1078
Eco105I	TACGTA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	920
Eco147I	AGGCCT	1 cut(s)	925
Eco47I	GGWCC	5 cut(s)	55, 286, 434, 569, 983
Eco47III	AGCGCT	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	65, 945
EcoO109I	RGGNCCY	3 cut(s)	55, 434, 983
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	920
ErhI	CCWWGG	1 cut(s)	920
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	2 cut(s)	280, 1085
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	2 cut(s)	276, 1081
FbaI	TGATCA	2 cut(s)	655, 1078
FblI	GTMKAC	2 cut(s)	84, 720
Fnu4HI	GCNGC	5 cut(s)	591, 594, 678, 857, 1104
FokI	GGATG	2 cut(s)	593, 1079
Fsp4HI	GCNGC	5 cut(s)	591, 594, 678, 857, 1104
FspBI	CTAG	4 cut(s)	662, 789, 843, 866
GlaI	GCGC	3 cut(s)	50, 174, 891
GluI	GCNGC	5 cut(s)	591, 594, 678, 857, 1104
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	709, 925
HapII	CCGG	1 cut(s)	1107
HgaI	GACGC	2 cut(s)	242, 367
HhaI	GCGC	3 cut(s)	51, 175, 892
Hin1II	CATG	2 cut(s)	280, 1085
Hin6I	GCGC	3 cut(s)	49, 173, 890
HinP1I	GCGC	3 cut(s)	49, 173, 890
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	6 cut(s)	14, 78, 133, 487, 688, 941
HpaII	CCGG	1 cut(s)	1107
HphI	GGTGA	5 cut(s)	74, 172, 318, 990, 1121
Hpy166II	GTNNAC	4 cut(s)	85, 504, 721, 825
Hpy188I	TCNGA	7 cut(s)	45, 213, 354, 964, 1066, 1097, 1179
Hpy188III	TCNNGA	4 cut(s)	127, 491, 728, 908
Hpy8I	GTNNAC	4 cut(s)	85, 504, 721, 825
HpyAV	CCTTC	7 cut(s)	59, 149, 708, 734, 811, 931, 1040
HpyCH4III	ACNGT	2 cut(s)	118, 991
HpyCH4IV	ACGT	2 cut(s)	304, 1033
HpyCH4V	TGCA	9 cut(s)	32, 259, 400, 458, 593, 637, 782, 856, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 922
HpyF3I	CTNAG	4 cut(s)	176, 540, 609, 954
HpySE526I	ACGT	2 cut(s)	304, 1033
Hsp92II	CATG	2 cut(s)	280, 1085
HspAI	GCGC	3 cut(s)	49, 173, 890
KpnI	GGTACC	1 cut(s)	72
Ksp22I	TGATCA	2 cut(s)	655, 1078
Kzo9I	GATC	5 cut(s)	208, 493, 655, 904, 1078
LmnI	GCTCC	4 cut(s)	199, 757, 934, 1166
Lsp1109I	GCAGC	4 cut(s)	577, 605, 868, 1090
LweI	GCATC	4 cut(s)	268, 787, 1014, 1101
MaeI	CTAG	4 cut(s)	662, 789, 843, 866
MaeII	ACGT	2 cut(s)	304, 1033
MaeIII	GTNAC	5 cut(s)	166, 305, 380, 996, 1011
MalI	GATC	5 cut(s)	210, 495, 657, 906, 1080
MboI	GATC	5 cut(s)	208, 493, 655, 904, 1078
MboII	GAAGA	2 cut(s)	34, 142
MflI	RGATCY	2 cut(s)	208, 904
MhlI	GDGCHC	2 cut(s)	538, 873
MluCI	AATT	2 cut(s)	949, 1039
MluI	ACGCGT	1 cut(s)	234
MlyI	GAGTC	4 cut(s)	87, 496, 682, 950
MmeI	TCCRAC	3 cut(s)	716, 1066, 1120
MnlI	CCTC	6 cut(s)	46, 68, 973, 1011, 1082, 1185
MseI	TTAA	2 cut(s)	186, 450
MspI	CCGG	1 cut(s)	1107
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	2 cut(s)	51, 236
MwoI	GCNNNNNNNGC	2 cut(s)	199, 922
NdeII	GATC	5 cut(s)	208, 493, 655, 904, 1078
NlaIII	CATG	2 cut(s)	280, 1085
NlaIV	GGNNCC	3 cut(s)	70, 556, 984
NmuCI	GTSAC	3 cut(s)	380, 996, 1011
PceI	AGGCCT	1 cut(s)	925
PfeI	GAWTC	2 cut(s)	14, 133
PkrI	GCNGC	5 cut(s)	592, 595, 679, 858, 1105
PleI	GAGTC	4 cut(s)	86, 495, 682, 949
PpsI	GAGTC	4 cut(s)	86, 495, 682, 949
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	3 cut(s)	55, 434, 983
Psp5II	RGGWCCY	3 cut(s)	55, 434, 983
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	3 cut(s)	70, 556, 984
PspPI	GGNCC	5 cut(s)	55, 286, 434, 569, 983
PspPPI	RGGWCCY	3 cut(s)	55, 434, 983
PstI	CTGCAG	2 cut(s)	595, 639
PsuI	RGATCY	2 cut(s)	208, 904
RsaI	GTAC	3 cut(s)	70, 878, 1117
RsaNI	GTAC	3 cut(s)	69, 877, 1116
SaqAI	TTAA	2 cut(s)	186, 450
SatI	GCNGC	5 cut(s)	591, 594, 678, 857, 1104
Sau3AI	GATC	5 cut(s)	208, 493, 655, 904, 1078
Sau96I	GGNCC	5 cut(s)	55, 286, 434, 569, 983
SchI	GAGTC	4 cut(s)	87, 496, 682, 950
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	2 cut(s)	538, 873
SfaNI	GCATC	4 cut(s)	268, 787, 1014, 1101
SfcI	CTRYAG	3 cut(s)	591, 635, 900
SinI	GGWCC	5 cut(s)	55, 286, 434, 569, 983
SnaBI	TACGTA	1 cut(s)	305
Sse9I	AATT	2 cut(s)	949, 1039
SseBI	AGGCCT	1 cut(s)	925
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	4 cut(s)	662, 789, 843, 866
StuI	AGGCCT	1 cut(s)	925
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	2 cut(s)	118, 991
TaiI	ACGT	2 cut(s)	307, 1036
TaqI	TCGA	4 cut(s)	12, 20, 523, 804
TasI	AATT	2 cut(s)	949, 1039
TatI	WGTACW	1 cut(s)	1115
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	14, 133
Tru1I	TTAA	2 cut(s)	186, 450
Tru9I	TTAA	2 cut(s)	186, 450
TscAI	CASTG	1 cut(s)	1140
TseFI	GTSAC	3 cut(s)	380, 996, 1011
TseI	GCWGC	4 cut(s)	590, 593, 856, 1103
Tsp45I	GTSAC	3 cut(s)	380, 996, 1011
TspDTI	ATGAA	4 cut(s)	6, 265, 425, 1143
TspGWI	ACGGA	3 cut(s)	299, 1030, 1135
TspRI	CASTG	1 cut(s)	1140
VpaK11BI	GGWCC	5 cut(s)	55, 286, 434, 569, 983
XapI	RAATTY	1 cut(s)	1039
XmiI	GTMKAC	2 cut(s)	84, 720
XspI	CTAG	4 cut(s)	662, 789, 843, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.