Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Reverse (-)

55945150 .. 55946184

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0421100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCGCAGAAGAGGGACAAGTCATCGCCTGCCACACCACTGAGGCTTGGGACGAACAGCTCAGGAAGGGAAACGAGACCAAGAAGCTGATTGTGGTGGACTTCACTGCTTCATGGTGTGGACCATGCCGTTTCATTGCCCCAATCTTGGCAGAGCTGGCCAGGAAGACCCCGGAGGTCACATTCCTGAAGGTGGATGTTGATGAGCTGAAGAAGGTTGCTGAGGACTGGTCTGTGGAGGCAATGCCTACCTTTATGTTCCTTAAAGAAGGCAAGGTTGTCGACAAGGTTGTCGGTGCTAAGAAAGATGAGCTTGTGCTCAAAGTAGGCCAGCATGCTGCTGCTGCTGCAGCTGCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

121

Amino Acids

13.19

Weight (kDa)

5.42

Isoelectric Point (pI)

15.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	9 - 106	8.3e-30	Thioredoxin
Thioredoxin_9	PF14595	22 - 91	3.1e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	2 cut(s)	3, 159
AcuI	CTGAAG	2 cut(s)	209, 230
AfiI	CCNNNNNNNGG	2 cut(s)	148, 193
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	61, 88, 157, 208, 313, 353
AluI	AGCT	6 cut(s)	61, 88, 157, 208, 313, 353
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	3 cut(s)	3, 159, 328
ApeKI	GCWGC	6 cut(s)	338, 341, 344, 347, 350, 353
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	325, 328, 331, 334, 340, 362
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	7 cut(s)	6, 339, 342, 345, 348, 351, 354
BlsI	GCNGC	7 cut(s)	7, 340, 343, 346, 349, 352, 355
Bme1390I	CCNGG	2 cut(s)	163, 173
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	163, 173
BpiI	GAAGAC	1 cut(s)	173
Bpu10I	CCTNAGC	2 cut(s)	62, 222
BpuMI	CCSGG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 193
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	135, 249
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	148, 193
BseMI	GCAATG	2 cut(s)	135, 249
BseMII	CTCAG	3 cut(s)	33, 76, 213
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	6 cut(s)	325, 328, 331, 334, 340, 362
BshFI	GGCC	3 cut(s)	5, 161, 330
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	30, 65
BslI	CCNNNNNNNGG	2 cut(s)	148, 193
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	30, 65
BsnI	GGCC	3 cut(s)	5, 161, 330
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	3 cut(s)	5, 161, 330
BspCNI	CTCAG	3 cut(s)	34, 75, 214
BspMAI	CTGCAG	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	135, 249
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	4 cut(s)	31, 159, 332, 336
BstDEI	CTNAG	5 cut(s)	42, 62, 222, 300, 363
BstF5I	GGATG	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 344, 347, 350, 353, 359
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	161, 171
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	6 cut(s)	325, 328, 331, 334, 340, 362
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	5, 161, 330
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	39, 105
Cac8I	GCNNGC	4 cut(s)	31, 159, 332, 336
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	3 cut(s)	114, 126, 335
DdeI	CTNAG	5 cut(s)	42, 62, 222, 300, 363
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	3, 159
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	209, 230
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	117, 129, 338
FaiI	YATR	4 cut(s)	115, 127, 257, 336
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	2 cut(s)	30, 65
FatI	CATG	3 cut(s)	113, 125, 334
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	7 cut(s)	6, 339, 342, 345, 348, 351, 354
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	7 cut(s)	6, 339, 342, 345, 348, 351, 354
GluI	GCNGC	7 cut(s)	6, 339, 342, 345, 348, 351, 354
HaeIII	GGCC	3 cut(s)	5, 161, 330
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	3 cut(s)	117, 129, 338
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	100, 122, 283
Hpy188III	TCNNGA	2 cut(s)	64, 187
Hpy8I	GTNNAC	3 cut(s)	100, 122, 283
HpyAV	CCTTC	4 cut(s)	61, 184, 208, 263
HpyCH4V	TGCA	2 cut(s)	350, 356
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 344, 347, 350, 353, 359
HpyF3I	CTNAG	5 cut(s)	42, 62, 222, 300, 363
Hsp92II	CATG	3 cut(s)	117, 129, 338
LpnPI	CCDG	9 cut(s)	43, 49, 143, 148, 175, 186, 200, 214, 344
Lsp1109I	GCAGC	6 cut(s)	325, 328, 331, 334, 340, 362
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	23, 178, 223
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MnlI	CCTC	5 cut(s)	7, 37, 169, 217, 232
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	163, 173
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	158, 344, 347, 350, 353, 359
NciI	CCSGG	1 cut(s)	173
NlaIII	CATG	3 cut(s)	117, 129, 338
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PkrI	GCNGC	7 cut(s)	7, 340, 343, 346, 349, 352, 355
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	7 cut(s)	6, 339, 342, 345, 348, 351, 354
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	163, 173
SduI	GDGCHC	1 cut(s)	321
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	122
SphI	GCATGC	1 cut(s)	338
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	161, 171
TaqI	TCGA	1 cut(s)	282
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	46, 112
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	6 cut(s)	338, 341, 344, 347, 350, 353
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	102, 124
TspRI	CASTG	2 cut(s)	46, 112
VpaK11BI	GGWCC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.