FvH4_5g16910
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
9653545 .. 9658340
4796 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16910.t3

Sequence Viewer

Length: 1257 bp
ATGGGTGAGGCCGATTCATCGAAGAAAGTTGCAGATAGGTATCTGAAGCGTGAGGTCCTCGGTGAAGGTACCTATGGAGTCGTCTACAAAGCCATTGATACTCATACAGGGCAGACAGTTGCTATTAAGAAGATTCGGGTGGGGAAGCAAAAGGAAGGGGTGAATGTTACAGCGCTTAGAGAGATTAAACTGTTAAAGGAGCTGAAAGATCCGAATATTATTGAGCTGATTGATGCGTTCCCCCATAAAGGAAACTTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTCGAAGCTGTTATACGTAACCATAATATAGTCCTTTCACCAGCTGACATAAAGTCGTATATTCAGATGACACTAAAAGGACTTGCTGTTTGTCACAAGAAATGGGTTTTGCACAGGGATATGAAGCCCAACAACTTGTTGATAGGACCTAATGGACAGCTTAAACTTGCAGATTTTGGTTTGGCACGAGTATTTGGGAGTCCAGATCGCAGGTTCACCCATCAGGTCTTTGCACGATGGTATAGAGCACCTGAGCTGTTATTTGGCACCAAACAGTATGGACCTGGGGTGGATGTTTGGGCGGCAGCTTGTATATTCGCTGAGCTTCTCCTACGACAACCATTTCTGCAGGGAACAAGTGATATTGATCAACTAGGAAAGATTTTTGCGGCTTTTGGGACTCCAACACCTTCTCAATGGCCTGATATGGTATACCTTCCTGATTATGTGGAATACCAGTATGCTCCACCATCTGCTTTGCGTAAAAGGTTTGCAATGGCTAGTGATGATGCATTTGATTTGCTATCAAAGATGTTTACTTACGACCCAAAAGCTAGAATATCTGTGCAGCAGGCGCTAGAGCACAGGTATTTTACATCTGCGCCACTACCTACGGATCCAGATAAGCTTCCAAGGCCTGCTCCAAAGAAGGAGTCCAGCAATACTAAGGTTTCAGATTTCAATCCAAATGAGGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCACGGAGAGTGATGCCAGAACGTGTGAGTTTTGAAGGAAATGCACCCCAATCGGATAAGGTTGATGATCATGTTGAGTACATGAGACAGGCTGCAGGTGAAAGTACAAGCAGGAATGAACCGGTGCCAATGTCAGTAGATTTTTCTATCTTTGGAGCAAAACCTCCAAATAGGCCCACAATAAACAGTGCTGACAGGACGCATCTAAAAAGGAAATTAGAGCTTGACTTCCAACAACCCGAATAG

Protein Analysis

419

Amino Acids

47.18

Weight (kDa)

9.09

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 294 2.8e-70 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 18 - 241 3.2e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1097
Acc36I ACCTGC 2 cut(s) 489, 1097
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 3 cut(s) 68, 554, 1135
AccI GTMKAC 2 cut(s) 84, 720
AciI CCGC 2 cut(s) 590, 677
AclWI GGATC 3 cut(s) 203, 899, 912
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 3 cut(s) 70, 1091, 1117
AfeI AGCGCT 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 248, 980
AflIII ACRYGT 1 cut(s) 1033
AgeI ACCGGT 1 cut(s) 1132
AgsI TTSAA 2 cut(s) 970, 1046
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 571
Alw21I GWGCWC 2 cut(s) 538, 873
Alw26I GTCTC 2 cut(s) 275, 1090
AlwI GGATC 3 cut(s) 203, 899, 912
Aor51HI AGCGCT 1 cut(s) 174
AoxI GGCC 4 cut(s) 9, 707, 923, 1184
ApeKI GCWGC 3 cut(s) 593, 856, 1103
ArsI GACNNNNNNTTYG 4 cut(s) 360, 392, 926, 958
AsiGI ACCGGT 1 cut(s) 1132
Asp718I GGTACC 1 cut(s) 68
AspLEI GCGC 3 cut(s) 175, 865, 892
AspS9I GGNCC 6 cut(s) 55, 286, 434, 569, 983, 1185
AsuHPI GGTGA 7 cut(s) 17, 74, 172, 318, 496, 990, 1121
AvaII GGWCC 5 cut(s) 55, 286, 434, 569, 983
BamHI GGATCC 1 cut(s) 904
BanI GGYRCC 3 cut(s) 68, 554, 1135
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BauI CACGAG 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 538, 873
BbvI GCAGC 3 cut(s) 605, 868, 1090
BccI CCATC 3 cut(s) 516, 519, 766
BcgI CGANNNNNNTGC 2 cut(s) 1044, 1078
BciT130I CCWGG 1 cut(s) 573
BclI TGATCA 2 cut(s) 655, 1078
BcoDI GTCTC 2 cut(s) 275, 1090
BfaI CTAG 4 cut(s) 662, 789, 843, 866
BfmI CTRYAG 2 cut(s) 635, 1104
BfoI RGCGCY 2 cut(s) 176, 866
BfuAI ACCTGC 2 cut(s) 489, 1097
BisI GCNGC 5 cut(s) 591, 594, 678, 857, 1104
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 5 cut(s) 592, 595, 679, 858, 1105
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 5 cut(s) 55, 286, 434, 569, 983
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 6 cut(s) 55, 286, 434, 569, 983, 1185
BmiI GGNNCC 5 cut(s) 70, 556, 906, 984, 1137
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 5 cut(s) 223, 268, 787, 1014, 1222
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 3 cut(s) 39, 654, 969
BsaJI CCNNGG 3 cut(s) 58, 572, 920
BsaWI WCCGGW 1 cut(s) 1132
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 980
Bse118I RCCGGY 1 cut(s) 1132
Bse1I ACTGG 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 789
Bse8I GATNNNNATC 3 cut(s) 39, 654, 969
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 58, 572, 920
BseGI GGATG 1 cut(s) 586
BseJI GATNNNNATC 3 cut(s) 39, 654, 969
BseLI CCNNNNNNNGG 2 cut(s) 248, 980
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 2 cut(s) 531, 600
BseNI ACTGG 1 cut(s) 745
BseXI GCAGC 3 cut(s) 605, 868, 1090
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 4 cut(s) 11, 709, 925, 1186
BshNI GGYRCC 3 cut(s) 68, 554, 1135
BshTI ACCGGT 1 cut(s) 1132
BsiHKAI GWGCWC 2 cut(s) 538, 873
BsiSI CCGG 1 cut(s) 1133
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 2 cut(s) 248, 980
BsmAI GTCTC 2 cut(s) 275, 1090
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 700
BsnI GGCC 4 cut(s) 11, 709, 925, 1186
Bsp1286I GDGCHC 2 cut(s) 538, 873
Bsp143I GATC 5 cut(s) 208, 493, 655, 904, 1078
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 2 cut(s) 590, 677
BspANI GGCC 4 cut(s) 11, 709, 925, 1186
BspCNI CTCAG 2 cut(s) 532, 601
BspLI GGNNCC 5 cut(s) 70, 556, 906, 984, 1137
BspMAI CTGCAG 2 cut(s) 639, 1108
BspMI ACCTGC 2 cut(s) 489, 1097
BspPI GGATC 3 cut(s) 203, 899, 912
BspT107I GGYRCC 3 cut(s) 68, 554, 1135
BsrDI GCAATG 1 cut(s) 789
BsrFI RCCGGY 1 cut(s) 1132
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 1132
BssECI CCNNGG 3 cut(s) 58, 572, 920
BssMI GATC 5 cut(s) 208, 493, 655, 904, 1078
BssNAI GTATAC 1 cut(s) 721
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 920
Bst1107I GTATAC 1 cut(s) 721
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 5 cut(s) 118, 192, 564, 991, 1199
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 861, 927
BstDEI CTNAG 4 cut(s) 176, 540, 609, 954
BstF5I GGATG 1 cut(s) 586
BstH2I RGCGCY 2 cut(s) 176, 866
BstHHI GCGC 3 cut(s) 175, 865, 892
BstKTI GATC 5 cut(s) 211, 496, 658, 907, 1081
BstMAI GTCTC 2 cut(s) 275, 1090
BstMBI GATC 5 cut(s) 208, 493, 655, 904, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 862, 922
BstNI CCWGG 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 635, 1104
BstSNI TACGTA 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 605, 868, 1090
BstX2I RGATCY 2 cut(s) 208, 904
BstYI RGATCY 2 cut(s) 208, 904
BstZ17I GTATAC 1 cut(s) 721
BsuRI GGCC 4 cut(s) 11, 709, 925, 1186
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 1204
BveI ACCTGC 2 cut(s) 489, 1097
Cac8I GCNNGC 2 cut(s) 861, 927
CfoI GCGC 3 cut(s) 175, 865, 892
Cfr10I RCCGGY 1 cut(s) 1132
Cfr13I GGNCC 6 cut(s) 55, 286, 434, 569, 983, 1185
CseI GACGC 1 cut(s) 1219
Csp6I GTAC 3 cut(s) 69, 1090, 1116
CspAI ACCGGT 1 cut(s) 1132
CviAII CATG 3 cut(s) 277, 1082, 1093
CviQI GTAC 3 cut(s) 69, 1090, 1116
DdeI CTNAG 4 cut(s) 176, 540, 609, 954
DpnI GATC 5 cut(s) 210, 495, 657, 906, 1080
DpnII GATC 5 cut(s) 208, 493, 655, 904, 1078
DriI GACNNNNNGTC 1 cut(s) 340
Eam1105I GACNNNNNGTC 1 cut(s) 340
Eco105I TACGTA 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 920
Eco147I AGGCCT 1 cut(s) 925
Eco47I GGWCC 5 cut(s) 55, 286, 434, 569, 983
Eco47III AGCGCT 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 65
EcoO109I RGGNCCY 3 cut(s) 55, 434, 983
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 920
EcoT22I ATGCAT 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 920
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 3 cut(s) 280, 1085, 1096
FaqI GGGAC 1 cut(s) 700
FatI CATG 3 cut(s) 276, 1081, 1092
FbaI TGATCA 2 cut(s) 655, 1078
FblI GTMKAC 2 cut(s) 84, 720
Fnu4HI GCNGC 5 cut(s) 591, 594, 678, 857, 1104
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 5 cut(s) 591, 594, 678, 857, 1104
FspBI CTAG 4 cut(s) 662, 789, 843, 866
GlaI GCGC 3 cut(s) 174, 864, 891
GluI GCNGC 5 cut(s) 591, 594, 678, 857, 1104
HaeII RGCGCY 2 cut(s) 176, 866
HaeIII GGCC 4 cut(s) 11, 709, 925, 1186
HapII CCGG 1 cut(s) 1133
HgaI GACGC 1 cut(s) 1219
HhaI GCGC 3 cut(s) 175, 865, 892
Hin1II CATG 3 cut(s) 280, 1085, 1096
Hin6I GCGC 3 cut(s) 173, 863, 890
HinP1I GCGC 3 cut(s) 173, 863, 890
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 6 cut(s) 14, 78, 133, 487, 688, 941
HpaII CCGG 1 cut(s) 1133
HphI GGTGA 7 cut(s) 17, 74, 172, 318, 496, 990, 1121
Hpy166II GTNNAC 4 cut(s) 85, 504, 721, 825
Hpy188I TCNGA 5 cut(s) 45, 213, 354, 964, 1066
Hpy188III TCNNGA 3 cut(s) 491, 728, 908
Hpy8I GTNNAC 4 cut(s) 85, 504, 721, 825
HpyAV CCTTC 6 cut(s) 59, 149, 708, 734, 931, 1040
HpyCH4III ACNGT 5 cut(s) 118, 192, 564, 991, 1199
HpyCH4IV ACGT 2 cut(s) 304, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 862, 922
HpyF3I CTNAG 4 cut(s) 176, 540, 609, 954
HpySE526I ACGT 2 cut(s) 304, 1033
Hsp92II CATG 3 cut(s) 280, 1085, 1096
HspAI GCGC 3 cut(s) 173, 863, 890
KpnI GGTACC 1 cut(s) 72
Ksp22I TGATCA 2 cut(s) 655, 1078
Kzo9I GATC 5 cut(s) 208, 493, 655, 904, 1078
LmnI GCTCC 4 cut(s) 199, 757, 934, 1166
Lsp1109I GCAGC 3 cut(s) 605, 868, 1090
LweI GCATC 5 cut(s) 223, 268, 787, 1014, 1222
MaeI CTAG 4 cut(s) 662, 789, 843, 866
MaeII ACGT 2 cut(s) 304, 1033
MaeIII GTNAC 5 cut(s) 166, 305, 380, 996, 1011
MalI GATC 5 cut(s) 210, 495, 657, 906, 1080
MboI GATC 5 cut(s) 208, 493, 655, 904, 1078
MboII GAAGA 2 cut(s) 34, 142
MflI RGATCY 2 cut(s) 208, 904
MhlI GDGCHC 2 cut(s) 538, 873
MluCI AATT 1 cut(s) 1226
MlyI GAGTC 4 cut(s) 87, 496, 682, 950
MmeI TCCRAC 1 cut(s) 716
MnlI CCTC 6 cut(s) 46, 68, 299, 973, 1011, 1185
Mph1103I ATGCAT 1 cut(s) 802
MseI TTAA 4 cut(s) 126, 186, 194, 450
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 1133
MspR9I CCNGG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 2 cut(s) 862, 922
NdeII GATC 5 cut(s) 208, 493, 655, 904, 1078
NlaIII CATG 3 cut(s) 280, 1085, 1096
NlaIV GGNNCC 5 cut(s) 70, 556, 906, 984, 1137
NmuCI GTSAC 3 cut(s) 380, 996, 1011
NsiI ATGCAT 1 cut(s) 802
PaqCI CACCTGC 1 cut(s) 1097
PceI AGGCCT 1 cut(s) 925
PfeI GAWTC 2 cut(s) 14, 133
PinAI ACCGGT 1 cut(s) 1132
PkrI GCNGC 5 cut(s) 592, 595, 679, 858, 1105
PleI GAGTC 4 cut(s) 86, 495, 682, 949
PpsI GAGTC 4 cut(s) 86, 495, 682, 949
Ppu21I YACGTR 1 cut(s) 305
PpuMI RGGWCCY 3 cut(s) 55, 434, 983
Psp5II RGGWCCY 3 cut(s) 55, 434, 983
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 5 cut(s) 70, 556, 906, 984, 1137
PspPI GGNCC 6 cut(s) 55, 286, 434, 569, 983, 1185
PspPPI RGGWCCY 3 cut(s) 55, 434, 983
PstI CTGCAG 2 cut(s) 639, 1108
PsuI RGATCY 2 cut(s) 208, 904
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 3 cut(s) 70, 1091, 1117
RsaNI GTAC 3 cut(s) 69, 1090, 1116
SaqAI TTAA 4 cut(s) 126, 186, 194, 450
SatI GCNGC 5 cut(s) 591, 594, 678, 857, 1104
Sau3AI GATC 5 cut(s) 208, 493, 655, 904, 1078
Sau96I GGNCC 6 cut(s) 55, 286, 434, 569, 983, 1185
SchI GAGTC 4 cut(s) 87, 496, 682, 950
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 2 cut(s) 538, 873
SfaNI GCATC 5 cut(s) 223, 268, 787, 1014, 1222
SfcI CTRYAG 2 cut(s) 635, 1104
SinI GGWCC 5 cut(s) 55, 286, 434, 569, 983
SnaBI TACGTA 1 cut(s) 305
Sse9I AATT 1 cut(s) 1226
SseBI AGGCCT 1 cut(s) 925
SsiI CCGC 2 cut(s) 590, 677
SspI AATATT 1 cut(s) 217
SspMI CTAG 4 cut(s) 662, 789, 843, 866
StuI AGGCCT 1 cut(s) 925
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 1 cut(s) 920
TaaI ACNGT 5 cut(s) 118, 192, 564, 991, 1199
TaiI ACGT 2 cut(s) 307, 1036
TaqI TCGA 2 cut(s) 20, 291
TasI AATT 1 cut(s) 1226
TatI WGTACW 2 cut(s) 1089, 1115
TauI GCSGC 2 cut(s) 593, 680
TfiI GAWTC 2 cut(s) 14, 133
Tru1I TTAA 4 cut(s) 126, 186, 194, 450
Tru9I TTAA 4 cut(s) 126, 186, 194, 450
TscAI CASTG 1 cut(s) 1204
TseFI GTSAC 3 cut(s) 380, 996, 1011
TseI GCWGC 3 cut(s) 593, 856, 1103
Tsp45I GTSAC 3 cut(s) 380, 996, 1011
TspDTI ATGAA 4 cut(s) 6, 265, 425, 1143
TspGWI ACGGA 3 cut(s) 299, 917, 1030
TspRI CASTG 1 cut(s) 1204
VpaK11BI GGWCC 5 cut(s) 55, 286, 434, 569, 983
XmiI GTMKAC 2 cut(s) 84, 720
XspI CTAG 4 cut(s) 662, 789, 843, 866
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.