Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Forward (+)

1523110 .. 1525530

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACGTCGTACAGTTGCTATCAAGAAGATTCGGGTTTGGAAGCAAAACGAAGGGGTGAATGTAACAGCGCTTTTAGAGAGATTAAACTGCTAAAGGAGCTGAAAGATCCGAATATTATTGAGTTGATCGACGCGTTCCCCCATAAAGGAAACCTGCATCTTGTGTTTGAGTTCATGGAGATGGACCTTGAAGCTGTTATACGTAACCATAATAGAGTCCTTTCACCAGCGGATATCAAGTCGTATATTCAGATGACGCTAAAAGGACTTGCTTTTTGTCGCAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAACAACTTGTTGATAGGACCTAATGGACAGCTAATTAAACTTGCAGATTTTGGTTTAGCACGAGTATTTGGGAGTCCAGATCGCAGGTTCACTCATCAGGTCTTTGCTCGATGGTATAGAGCACCTGAGCTGTTATTTGGCACCAAACAATATGGACCTGGGGTGGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTCCTACGACAACCATTTCTGCAGGAAAGATTTTTTGCGGCTTTTGGGACTTCAACACCTTCTCAATGGCCTGATATGGTATACCTTCCTGACTATGTGGAATACCAGTATTCTCCACCATCTGCTTTGCGTAAAAGGTTTGCAATGGCTAGTGATGATGCCTTCGATTTGGTATCAAAGATGTTTACTTATGACCCAAAAACTAGCATATCTGTGCAGCAGGCACTAGAGCACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

251

Amino Acids

29.0

Weight (kDa)

8.58

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 250	8.7e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 173	7.6e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	162, 390
AccB1I	GGYRCC	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	230, 554
AclWI	GGATC	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	191, 570
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	5 cut(s)	100, 194, 346, 445, 514
AluI	AGCT	5 cut(s)	100, 194, 346, 445, 514
Alw21I	GWGCWC	2 cut(s)	439, 750
AlwI	GGATC	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	491, 494, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	184, 332, 470
AsuHPI	GGTGA	2 cut(s)	68, 216
AvaII	GGWCC	3 cut(s)	184, 332, 470
BanI	GGYRCC	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BauI	CACGAG	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	439, 750
BbvI	GCAGC	3 cut(s)	478, 506, 745
BccI	CCATC	3 cut(s)	175, 420, 643
BciT130I	CCWGG	1 cut(s)	474
BfaI	CTAG	3 cut(s)	666, 720, 743
BfmI	CTRYAG	2 cut(s)	492, 536
BfoI	RGCGCY	1 cut(s)	72
BfuAI	ACCTGC	2 cut(s)	162, 390
BisI	GCNGC	4 cut(s)	492, 495, 555, 734
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	4 cut(s)	493, 496, 556, 735
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	3 cut(s)	184, 332, 470
BmgT120I	GGNCC	3 cut(s)	184, 332, 470
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	166, 664
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	432, 501
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	3 cut(s)	478, 506, 745
BsgI	GTGCAG	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	455
BsiHKAI	GWGCWC	2 cut(s)	439, 750
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	2 cut(s)	439, 750
Bsp143I	GATC	3 cut(s)	106, 126, 394
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	2 cut(s)	230, 554
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	2 cut(s)	433, 502
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	2 cut(s)	496, 540
BspMI	ACCTGC	2 cut(s)	162, 390
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	106, 126, 394
BssNAI	GTATAC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	2 cut(s)	441, 510
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	3 cut(s)	109, 129, 397
BstMBI	GATC	3 cut(s)	106, 126, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	2 cut(s)	492, 536
BstSNI	TACGTA	1 cut(s)	203
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	478, 506, 745
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	487
BveI	ACCTGC	2 cut(s)	162, 390
Cac8I	GCNNGC	1 cut(s)	738
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	184, 332, 470
CseI	GACGC	2 cut(s)	140, 265
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	441, 510
DpnI	GATC	3 cut(s)	108, 128, 396
DpnII	GATC	3 cut(s)	106, 126, 394
Eco105I	TACGTA	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	3 cut(s)	184, 332, 470
Eco47III	AGCGCT	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	1 cut(s)	178
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	492, 495, 555, 734
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	4 cut(s)	492, 495, 555, 734
FspBI	CTAG	3 cut(s)	666, 720, 743
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	492, 495, 555, 734
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	586
HgaI	GACGC	2 cut(s)	140, 265
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	3 cut(s)	29, 216, 388
HphI	GGTGA	2 cut(s)	68, 216
Hpy166II	GTNNAC	3 cut(s)	405, 598, 702
Hpy188I	TCNGA	2 cut(s)	111, 252
Hpy188III	TCNNGA	3 cut(s)	23, 392, 605
Hpy8I	GTNNAC	3 cut(s)	405, 598, 702
Hpy99I	CGWCG	2 cut(s)	10, 134
HpyAV	CCTTC	4 cut(s)	45, 585, 611, 688
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	2 cut(s)	5, 202
HpyCH4V	TGCA	7 cut(s)	157, 298, 359, 494, 538, 659, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	441, 510
HpySE526I	ACGT	2 cut(s)	5, 202
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	106, 126, 394
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	3 cut(s)	478, 506, 745
LweI	GCATC	2 cut(s)	166, 664
MaeI	CTAG	3 cut(s)	666, 720, 743
MaeII	ACGT	2 cut(s)	5, 202
MaeIII	GTNAC	2 cut(s)	62, 203
MalI	GATC	3 cut(s)	108, 128, 396
MboI	GATC	3 cut(s)	106, 126, 394
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	439, 750
MluCI	AATT	1 cut(s)	348
MluI	ACGCGT	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	225, 397
MseI	TTAA	2 cut(s)	84, 351
MslI	CAYNNNNRTG	2 cut(s)	179, 728
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	3 cut(s)	106, 126, 394
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	493, 496, 556, 735
PleI	GAGTC	2 cut(s)	224, 396
PpsI	GAGTC	2 cut(s)	224, 396
Ppu21I	YACGTR	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	3 cut(s)	184, 332, 470
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	2 cut(s)	496, 540
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	179, 728
SaqAI	TTAA	2 cut(s)	84, 351
SatI	GCNGC	4 cut(s)	492, 495, 555, 734
Sau3AI	GATC	3 cut(s)	106, 126, 394
Sau96I	GGNCC	3 cut(s)	184, 332, 470
SchI	GAGTC	2 cut(s)	225, 397
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	439, 750
SfaNI	GCATC	2 cut(s)	166, 664
SfcI	CTRYAG	2 cut(s)	492, 536
SinI	GGWCC	3 cut(s)	184, 332, 470
SmiMI	CAYNNNNRTG	2 cut(s)	179, 728
SnaBI	TACGTA	1 cut(s)	203
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	2 cut(s)	230, 554
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	3 cut(s)	666, 720, 743
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	2 cut(s)	8, 205
TaqI	TCGA	3 cut(s)	129, 424, 681
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	84, 351
Tru9I	TTAA	2 cut(s)	84, 351
TseI	GCWGC	3 cut(s)	491, 494, 733
TspDTI	ATGAA	2 cut(s)	163, 323
VpaK11BI	GGWCC	3 cut(s)	184, 332, 470
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	3 cut(s)	666, 720, 743
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.