Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Reverse (-)

20698982 .. 20699748

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTATACCTCCCTGATTATGTGGAATACCAATATGTTCCAGCACCCCCTTTGCGTTCATTGTTTCCAGTGGCTAGTGATGATGCCCTAGATTTGTTAGCGAAGATGTTTACTTATGACCCCAAAGCTAGAATATCCGTACAGCAGGCATTAGAGCACAGGTATCAGACTCTGGCTATTCAATTGGATAAGCTTCCTAGACCTGCTCCAAAGCGGGAGTCTAAGGGTTCAGATTTTAATCCAAATGATGGTCCTACTGTGTTATCACCTCCACGAAAATCACGGAGAGTGATGCCAGAGCGTGATGGTTTTGAAGGAAATTCACACGTTGATAAGATTGATGATCGTTTCGGTGAAGCCAGACATGCTGGTGGTGAAAATACAAGCAGGAATGAACCGGTGCCAATGTCAGTTGATTTTTCTATCTTTGGAGCAAAACCTCCAAATAGACCTACAATTAATAGTGCTGACAGAACACATCTAAAGAGGAAACTAGATCTTGAATTTCAACAGCCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

174

Amino Acids

19.63

Weight (kDa)

6.92

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	319, 503
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	325
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	182, 314, 503, 509
AluBI	AGCT	2 cut(s)	128, 193
AluI	AGCT	2 cut(s)	128, 193
Alw21I	GWGCWC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	319, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	1 cut(s)	459
AsiGI	ACCGGT	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	258, 365, 386
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	2 cut(s)	242, 299
BfaI	CTAG	5 cut(s)	75, 89, 129, 198, 494
BfuAI	ACCTGC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	402
BmsI	GCATC	2 cut(s)	73, 282
BsaBI	GATNNNNATC	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	400
BshTI	ACCGGT	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	343, 496
BspACI	CCGC	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	397
BssMI	GATC	2 cut(s)	343, 496
BssNAI	GTATAC	1 cut(s)	7
Bst1107I	GTATAC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	346, 499
BstMBI	GATC	2 cut(s)	343, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BstZ17I	GTATAC	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	140
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	6 cut(s)	74, 128, 176, 193, 359, 514
CviKI_1	RGCY	6 cut(s)	74, 128, 176, 193, 359, 514
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	345, 498
DpnII	GATC	2 cut(s)	343, 496
Eco47I	GGWCC	1 cut(s)	251
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	7, 21, 36, 117, 366
FatI	CATG	1 cut(s)	364
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	6
FspBI	CTAG	5 cut(s)	75, 89, 129, 198, 494
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	169, 218
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	3 cut(s)	258, 365, 386
Hpy166II	GTNNAC	2 cut(s)	7, 111
Hpy188I	TCNGA	2 cut(s)	168, 232
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	2 cut(s)	7, 111
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	343, 496
LmnI	GCTCC	2 cut(s)	211, 431
LweI	GCATC	2 cut(s)	73, 282
MaeI	CTAG	5 cut(s)	75, 89, 129, 198, 494
MaeII	ACGT	1 cut(s)	327
MalI	GATC	2 cut(s)	345, 498
MboI	GATC	2 cut(s)	343, 496
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	182
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	182, 319, 456, 503
MlyI	GAGTC	2 cut(s)	163, 227
MnlI	CCTC	4 cut(s)	20, 279, 450, 480
MseI	TTAA	2 cut(s)	237, 459
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	2 cut(s)	343, 496
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	402
NspI	RCATGY	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	2 cut(s)	163, 226
PpsI	GAGTC	2 cut(s)	163, 226
PshBI	ATTAAT	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	237, 459
Sau3AI	GATC	2 cut(s)	343, 496
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	2 cut(s)	163, 227
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	9 cut(s)	12, 130, 164, 195, 205, 271, 330, 442, 454
SfaNI	GCATC	2 cut(s)	73, 282
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	4 cut(s)	182, 319, 456, 503
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	5 cut(s)	75, 89, 129, 198, 494
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	330
TasI	AATT	4 cut(s)	182, 319, 456, 503
Tru1I	TTAA	2 cut(s)	237, 459
Tru9I	TTAA	2 cut(s)	237, 459
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	48, 408
TspGWI	ACGGA	2 cut(s)	127, 298
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	2 cut(s)	319, 503
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	5 cut(s)	75, 89, 129, 198, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.