MD06G1222900.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
35419147 .. 35422857
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1222900.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGCAGAGGTCGATCTGACGAAGAAAGTGGCGGATAGGTATCTGAAGCGCGAGGTTCTTGGTGAAGGTACCTATGGAGTCGTCTACAAAGCCATTGATACGAAGACAGGACAGACAGTTGCTATTAAAAAAATTCGGCTTGGAAAGCAAAAGGAAGGGGTGAATTTCACAGCCCTCAGAGAAATTAAGCTGCTTAAAGAGCTGAAAGATCCGAACATAATTGAGTTGATTGAAGCATTCCCTCATAAAGGAAACTTGCATCTTGTATTTGAGTTCATGGAAACGGACCTTGAAGCTGTTATACGTGATCGGAATATATTCCTATCACCAGCTGACATAAAGTCATACCTTCAGATGACGTTAAAAGGACTTGCTGTTTGCCACAAGAAATGGGTTTTACACAGGGATATGAAGCCTAACAACTTGTTGATAGGACCTAACGGGCAGCTTAAACTTGCAGATTTTGGTTTAGCACGAATATTTGGGAGCCCAGATCGCAGGTTCACTCATCAGGTCTTTGCCCGTTGGTATAGAGCACCTGAGCTGTTATTTGGCACCAAGCAATATGGACCTGGGGTAGATGTTTGGGCTGCGGCTTGTATATTCGCTGAACTTCTCTTACGCAGACCCTTTTTGCAGGGATCAAGTGATATTGATCAATTAGGAAAGATTTTTGCGGCTTTTGGGACTCCAACACCTTCTCAGTGGCCTGATATGGTATACCTCCGGGATTATGTGGAATACCAATATGTTCCAGCACCCCCTTTGCGTTCATTGTTTCCAGTGGCTGGTGATGATGCCCTGGATTTGTTAGCGAAGATGTTTACTTATGACCCCAAAGTTAGAATTTCCGTACAGCAGGCATTAGAGCACAGGTACTTTACATCTGCACCTCTTCCTACGTATCCAGACAAGCTTCCTAGACCTGCTCCAAAGCGGGAATCTAAGGCTTCTGATTTTGATCCAAATGATGGTCCTACTGTGTTATCACCTCCTCGAAAATCAAGGAGAGTGATGCCAAAGCGTGATGGTTTTGAAGGAAATTCACATGTTGATAAGATTGATGATCGTTTCGGTGAAGCCAGACATGCTGCTGGTGAAAATACAAGCAGGAATGAACCAATGTCAGTTGATTTTTCTATCTTTGGAGCAAAACCTCCAACTAGACCTACTATTAATAGTGCTGACAGAACACATCTAAAGAGGAAACTAGATCTTGAATTTCAACATCCCGAATAA

Protein Analysis

413

Amino Acids

46.79

Weight (kDa)

9.31

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 294 2e-68 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 18 - 238 6.6e-27 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 489, 934
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 2 cut(s) 68, 554
AccB7I CCANNNNNTGG 2 cut(s) 788, 971
AccI GTMKAC 2 cut(s) 84, 720
AccII CGCG 1 cut(s) 51
AciI CCGC 4 cut(s) 32, 593, 677, 937
AclWI GGATC 3 cut(s) 203, 649, 956
AcsI RAATTY 5 cut(s) 132, 163, 846, 1042, 1220
AcuI CTGAAG 2 cut(s) 65, 335
AfaI GTAC 3 cut(s) 70, 855, 878
AfiI CCNNNNNNNGG 3 cut(s) 248, 788, 971
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 5 cut(s) 233, 293, 1037, 1220, 1226
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 2 cut(s) 571, 801
AluBI AGCT 7 cut(s) 190, 202, 296, 332, 448, 544, 916
AluI AGCT 7 cut(s) 190, 202, 296, 332, 448, 544, 916
Alw21I GWGCWC 2 cut(s) 538, 873
AlwI GGATC 3 cut(s) 203, 649, 956
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 1 cut(s) 707
ApeKI GCWGC 4 cut(s) 190, 445, 590, 1091
ApoI RAATTY 5 cut(s) 132, 163, 846, 1042, 1220
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AseI ATTAAT 1 cut(s) 1176
Asp700I GAANNNNTTC 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 4 cut(s) 286, 434, 569, 974
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 7 cut(s) 74, 172, 318, 803, 981, 1088, 1109
AvaII GGWCC 4 cut(s) 286, 434, 569, 974
BanI GGYRCC 2 cut(s) 68, 554
BanII GRGCYC 1 cut(s) 491
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 2 cut(s) 538, 873
BbvI GCAGC 4 cut(s) 177, 457, 577, 1078
BccI CCATC 2 cut(s) 965, 1022
BciT130I CCWGG 2 cut(s) 573, 803
BciVI GTATCC 1 cut(s) 915
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 728
BfaI CTAG 3 cut(s) 921, 1164, 1211
BfuAI ACCTGC 2 cut(s) 489, 934
BfuI GTATCC 1 cut(s) 915
BglII AGATCT 1 cut(s) 1213
BisI GCNGC 6 cut(s) 191, 446, 591, 594, 678, 1092
BlsI GCNGC 6 cut(s) 192, 447, 592, 595, 679, 1093
Bme1390I CCNGG 3 cut(s) 573, 728, 803
Bme18I GGWCC 4 cut(s) 286, 434, 569, 974
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 4 cut(s) 286, 434, 569, 974
BmiI GGNNCC 3 cut(s) 70, 488, 556
BmrFI CCNGG 3 cut(s) 573, 728, 803
BmsI GCATC 3 cut(s) 268, 787, 1005
BpiI GAAGAC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 728
BsaAI YACGTR 2 cut(s) 305, 903
BsaBI GATNNNNATC 3 cut(s) 39, 654, 960
BsaJI CCNNGG 2 cut(s) 572, 801
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 788, 971
Bse1I ACTGG 1 cut(s) 782
Bse8I GATNNNNATC 3 cut(s) 39, 654, 960
BseBI CCWGG 2 cut(s) 573, 803
BseDI CCNNGG 2 cut(s) 572, 801
BseGI GGATG 1 cut(s) 1228
BseJI GATNNNNATC 3 cut(s) 39, 654, 960
BseLI CCNNNNNNNGG 3 cut(s) 248, 788, 971
BseMII CTCAG 3 cut(s) 190, 531, 716
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 1 cut(s) 984
BseXI GCAGC 4 cut(s) 177, 457, 577, 1078
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 709
BshNI GGYRCC 2 cut(s) 68, 554
BsiHKAI GWGCWC 2 cut(s) 538, 873
BsiSI CCGG 1 cut(s) 727
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 3 cut(s) 248, 788, 971
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 709
Bsp1286I GDGCHC 3 cut(s) 491, 538, 873
Bsp143I GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
BspACI CCGC 4 cut(s) 32, 593, 677, 937
BspANI GGCC 1 cut(s) 709
BspCNI CTCAG 3 cut(s) 189, 532, 715
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 70, 488, 556
BspMI ACCTGC 2 cut(s) 489, 934
BspPI GGATC 3 cut(s) 203, 649, 956
BspT107I GGYRCC 2 cut(s) 68, 554
BsrI ACTGG 1 cut(s) 782
BssECI CCNNGG 2 cut(s) 572, 801
BssMI GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
BssNAI GTATAC 1 cut(s) 721
Bst1107I GTATAC 1 cut(s) 721
Bst2UI CCWGG 2 cut(s) 573, 803
Bst4CI ACNGT 2 cut(s) 118, 982
Bst6I CTCTTC 1 cut(s) 900
BstBAI YACGTR 2 cut(s) 305, 903
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 176, 540, 702, 945
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 1228
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 9 cut(s) 16, 211, 310, 496, 644, 658, 964, 1069, 1216
BstMBI GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 145, 199, 495, 1088
BstNI CCWGG 2 cut(s) 573, 803
BstNSI RCATGY 2 cut(s) 1052, 1091
BstSCI CCNGG 3 cut(s) 571, 726, 801
BstSNI TACGTA 1 cut(s) 903
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 4 cut(s) 177, 457, 577, 1078
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 208, 1213
BstYI RGATCY 2 cut(s) 208, 1213
BstZ17I GTATAC 1 cut(s) 721
BsuI GTATCC 1 cut(s) 915
BsuRI GGCC 1 cut(s) 709
BtsCI GGATG 1 cut(s) 1228
BtsIMutI CAGTG 2 cut(s) 710, 789
BveI ACCTGC 2 cut(s) 489, 934
Cac8I GCNNGC 1 cut(s) 861
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 286, 434, 569, 974
Csp6I GTAC 3 cut(s) 69, 854, 877
CviAII CATG 3 cut(s) 277, 1049, 1088
CviQI GTAC 3 cut(s) 69, 854, 877
DdeI CTNAG 4 cut(s) 176, 540, 702, 945
DpnI GATC 9 cut(s) 15, 210, 309, 495, 643, 657, 963, 1068, 1215
DpnII GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 900
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 900
EciI GGCGGA 1 cut(s) 47
Eco105I TACGTA 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 4 cut(s) 286, 434, 569, 974
Eco57I CTGAAG 2 cut(s) 65, 335
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 571, 801
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 3 cut(s) 280, 1052, 1091
FaqI GGGAC 1 cut(s) 700
FatI CATG 3 cut(s) 276, 1048, 1087
FauI CCCGC 1 cut(s) 930
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 2 cut(s) 84, 720
Fnu4HI GCNGC 6 cut(s) 191, 446, 591, 594, 678, 1092
FokI GGATG 1 cut(s) 1215
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 6 cut(s) 191, 446, 591, 594, 678, 1092
FspBI CTAG 3 cut(s) 921, 1164, 1211
GlaI GCGC 1 cut(s) 50
GluI GCNGC 6 cut(s) 191, 446, 591, 594, 678, 1092
HaeIII GGCC 1 cut(s) 709
HapII CCGG 1 cut(s) 727
HhaI GCGC 1 cut(s) 51
Hin1II CATG 3 cut(s) 280, 1052, 1091
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 3 cut(s) 78, 688, 941
HpaII CCGG 1 cut(s) 727
HphI GGTGA 7 cut(s) 74, 172, 318, 803, 981, 1088, 1109
Hpy166II GTNNAC 4 cut(s) 85, 504, 721, 825
Hpy188I TCNGA 7 cut(s) 18, 45, 179, 213, 312, 354, 955
Hpy188III TCNNGA 3 cut(s) 908, 1217, 1232
Hpy8I GTNNAC 4 cut(s) 85, 504, 721, 825
HpyAV CCTTC 5 cut(s) 59, 149, 359, 708, 1031
HpyCH4III ACNGT 2 cut(s) 118, 982
HpyCH4IV ACGT 3 cut(s) 304, 359, 902
HpyCH4V TGCA 4 cut(s) 259, 458, 637, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 199, 495, 1088
HpyF3I CTNAG 4 cut(s) 176, 540, 702, 945
HpySE526I ACGT 3 cut(s) 304, 359, 902
Hsp92II CATG 3 cut(s) 280, 1052, 1091
HspAI GCGC 1 cut(s) 49
KpnI GGTACC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
LmnI GCTCC 3 cut(s) 486, 934, 1148
Lsp1109I GCAGC 4 cut(s) 177, 457, 577, 1078
LweI GCATC 3 cut(s) 268, 787, 1005
MaeI CTAG 3 cut(s) 921, 1164, 1211
MaeII ACGT 3 cut(s) 304, 359, 902
MalI GATC 9 cut(s) 15, 210, 309, 495, 643, 657, 963, 1068, 1215
MboI GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
MboII GAAGA 4 cut(s) 34, 115, 829, 887
MflI RGATCY 2 cut(s) 208, 1213
MhlI GDGCHC 3 cut(s) 491, 538, 873
MluCI AATT 8 cut(s) 132, 163, 183, 219, 659, 846, 1042, 1220
MlyI GAGTC 2 cut(s) 87, 682
MmeI TCCRAC 2 cut(s) 716, 1184
MnlI CCTC 9 cut(s) 46, 185, 252, 734, 903, 1002, 1005, 1167, 1197
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 6 cut(s) 126, 186, 195, 362, 450, 1176
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 3 cut(s) 573, 728, 803
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 2 cut(s) 573, 803
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 145, 199, 495, 1088
NciI CCSGG 1 cut(s) 728
NdeII GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
NlaIII CATG 3 cut(s) 280, 1052, 1091
NlaIV GGNNCC 3 cut(s) 70, 488, 556
NspI RCATGY 2 cut(s) 1052, 1091
PciI ACATGT 1 cut(s) 1048
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 941
PflMI CCANNNNNTGG 2 cut(s) 788, 971
PfoI TCCNGGA 1 cut(s) 726
PkrI GCNGC 6 cut(s) 192, 447, 592, 595, 679, 1093
PleI GAGTC 2 cut(s) 86, 682
PpsI GAGTC 2 cut(s) 86, 682
Ppu21I YACGTR 2 cut(s) 305, 903
PpuMI RGGWCCY 1 cut(s) 434
PscI ACATGT 1 cut(s) 1048
PshBI ATTAAT 1 cut(s) 1176
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 571, 801
PspGI CCWGG 2 cut(s) 571, 801
PspN4I GGNNCC 3 cut(s) 70, 488, 556
PspPI GGNCC 4 cut(s) 286, 434, 569, 974
PspPPI RGGWCCY 1 cut(s) 434
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 2 cut(s) 208, 1213
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 3 cut(s) 70, 855, 878
RsaNI GTAC 3 cut(s) 69, 854, 877
SaqAI TTAA 6 cut(s) 126, 186, 195, 362, 450, 1176
SatI GCNGC 6 cut(s) 191, 446, 591, 594, 678, 1092
Sau3AI GATC 9 cut(s) 13, 208, 307, 493, 641, 655, 961, 1066, 1213
Sau96I GGNCC 4 cut(s) 286, 434, 569, 974
SchI GAGTC 2 cut(s) 87, 682
ScrFI CCNGG 3 cut(s) 573, 728, 803
SduI GDGCHC 3 cut(s) 491, 538, 873
SfaNI GCATC 3 cut(s) 268, 787, 1005
SinI GGWCC 4 cut(s) 286, 434, 569, 974
SnaBI TACGTA 1 cut(s) 903
Sse9I AATT 8 cut(s) 132, 163, 183, 219, 659, 846, 1042, 1220
SsiI CCGC 4 cut(s) 32, 593, 677, 937
SspI AATATT 1 cut(s) 480
SspMI CTAG 3 cut(s) 921, 1164, 1211
StyD4I CCNGG 3 cut(s) 571, 726, 801
TaaI ACNGT 2 cut(s) 118, 982
TaiI ACGT 3 cut(s) 307, 362, 905
TaqI TCGA 2 cut(s) 12, 997
TasI AATT 8 cut(s) 132, 163, 183, 219, 659, 846, 1042, 1220
TauI GCSGC 2 cut(s) 596, 680
TfiI GAWTC 1 cut(s) 941
Tru1I TTAA 6 cut(s) 126, 186, 195, 362, 450, 1176
Tru9I TTAA 6 cut(s) 126, 186, 195, 362, 450, 1176
TscAI CASTG 2 cut(s) 710, 789
TseI GCWGC 4 cut(s) 190, 445, 590, 1091
TspDTI ATGAA 4 cut(s) 265, 425, 762, 1131
TspGWI ACGGA 2 cut(s) 299, 841
TspRI CASTG 2 cut(s) 710, 789
Van91I CCANNNNNTGG 2 cut(s) 788, 971
VpaK11BI GGWCC 4 cut(s) 286, 434, 569, 974
VspI ATTAAT 1 cut(s) 1176
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 5 cut(s) 132, 163, 846, 1042, 1220
XceI RCATGY 2 cut(s) 1052, 1091
XmiI GTMKAC 2 cut(s) 84, 720
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 3 cut(s) 921, 1164, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.