Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Reverse (-)

66082297 .. 66086446

Gene Structure 4150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGCGAGGTCGATTCATCGAAGAAAGTTGCAGATAGGTATCTGAAGCGCGAGGTCCTCGGTGAAGGTACCTACGGAGTCGTCTACAAAGCCATTGATACTCATACAGGGCAGACAGTTGCTATCAAGAAGATTCGGGTTGGGAAGCAAAAGGAAGGGGTGAATGTTACGGCGCTTAGAGAGATTAAACTGCTAAAGGAGCTGAAAGATCCAAATATTATTGAGTTGATCGACGCGTTCCCCCATAAAGGAAACCTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTTGAAGCTGTTATACGTAACCATAATATAGTCCTTTCACCAGCGGATATAAAGTCGTATATTCAGATGACGCTAAAAGGACTTGCTTTTTGTCACAAGAAATGGGTTTTGCACAGGGATATGAAGCCCAACAACTTGTTGATAGGACCTAATGGACAGCTTAAACTTGCAGATTTTGGTTTAGCACGAGTATTTGGGAGTCCAGATCGCAGGTTCACTCATCAGGTCTTTGCTCGATGGTATAGAGCACCTGAGCTATTATTTGGCACCAAACAATATGGACCTGGGGTGGATGTTTGGGCTGCAGCTTGTATATTCGCTGAGCTTCTCCTACGACAACCCATTTCTGCAGGGTACTTCACATCTGCTCCACTACCTACAGATCCAGATAAGCTTCCAAGGCCTGCTCCAAAGAAGGAGTCCAGCAATTCTAAGGCTTCAGATTTCAATCCAAATGAGGGTCCTACTGTTTTGTCACCTCCAAGAAAGTCAAGGAGAGTGATGCCAGAACGTGTGAGTTTTGAAGGAAATGCACCCCAATCAGATAAGGTTGATGATCATGTCGGAGACATCCGACAGGGCTGCTGGGTGAAAGTACAAGCAGGAATGAACCGGTACCAATGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

305

Amino Acids

34.25

Weight (kDa)

9.42

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 213	5.2e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 207	8e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	264, 489
Acc65I	GGTACC	2 cut(s)	68, 903
AccB1I	GGYRCC	3 cut(s)	68, 554, 903
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	2 cut(s)	51, 236
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	2 cut(s)	203, 665
AcuI	CTGAAG	2 cut(s)	65, 711
AfaI	GTAC	4 cut(s)	70, 644, 885, 905
AfiI	CCNNNNNNNGG	2 cut(s)	248, 746
AflIII	ACRYGT	2 cut(s)	234, 799
AgeI	ACCGGT	1 cut(s)	900
AgsI	TTSAA	3 cut(s)	293, 736, 812
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	7 cut(s)	202, 296, 448, 544, 596, 613, 682
AluI	AGCT	7 cut(s)	202, 296, 448, 544, 596, 613, 682
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	275, 849
AlwI	GGATC	2 cut(s)	203, 665
AoxI	GGCC	1 cut(s)	689
ApeKI	GCWGC	3 cut(s)	590, 593, 870
ArsI	GACNNNNNNTTYG	4 cut(s)	360, 392, 692, 724
AsiGI	ACCGGT	1 cut(s)	900
Asp718I	GGTACC	2 cut(s)	68, 903
AspLEI	GCGC	2 cut(s)	51, 175
AspS9I	GGNCC	5 cut(s)	55, 286, 434, 569, 749
AsuHPI	GGTGA	5 cut(s)	74, 172, 318, 756, 889
AvaII	GGWCC	5 cut(s)	55, 286, 434, 569, 749
BaeI	ACNNNNGTAYC	1 cut(s)	895
BanI	GGYRCC	3 cut(s)	68, 554, 903
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	577, 605, 857
BccI	CCATC	1 cut(s)	519
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	852, 886
BciT130I	CCWGG	1 cut(s)	573
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	275, 849
BfmI	CTRYAG	3 cut(s)	591, 636, 666
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	264, 489
BisI	GCNGC	3 cut(s)	591, 594, 871
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	3 cut(s)	592, 595, 872
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	5 cut(s)	55, 286, 434, 569, 749
BmgT120I	GGNCC	5 cut(s)	55, 286, 434, 569, 749
BmiI	GGNNCC	4 cut(s)	70, 556, 750, 905
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	268, 780
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	305
BsaBI	GATNNNNATC	2 cut(s)	39, 735
BsaJI	CCNNGG	3 cut(s)	58, 572, 686
BsaWI	WCCGGW	1 cut(s)	900
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 746
Bse118I	RCCGGY	1 cut(s)	900
Bse8I	GATNNNNATC	2 cut(s)	39, 735
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	58, 572, 686
BseGI	GGATG	2 cut(s)	586, 858
BseJI	GATNNNNATC	2 cut(s)	39, 735
BseLI	CCNNNNNNNGG	2 cut(s)	248, 746
BseMII	CTCAG	2 cut(s)	531, 600
BseXI	GCAGC	3 cut(s)	577, 605, 857
BseYI	CCCAGC	1 cut(s)	873
Bsh1236I	CGCG	2 cut(s)	51, 236
BshFI	GGCC	1 cut(s)	691
BshNI	GGYRCC	3 cut(s)	68, 554, 903
BshTI	ACCGGT	1 cut(s)	900
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	901
BslI	CCNNNNNNNGG	2 cut(s)	248, 746
BsmAI	GTCTC	2 cut(s)	275, 849
BsmBI	CGTCTC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	691
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	5 cut(s)	208, 228, 493, 670, 844
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	2 cut(s)	532, 601
BspFNI	CGCG	2 cut(s)	51, 236
BspLI	GGNNCC	4 cut(s)	70, 556, 750, 905
BspMAI	CTGCAG	2 cut(s)	595, 640
BspMI	ACCTGC	2 cut(s)	264, 489
BspPI	GGATC	2 cut(s)	203, 665
BspT107I	GGYRCC	3 cut(s)	68, 554, 903
BsrFI	RCCGGY	1 cut(s)	900
BssAI	RCCGGY	1 cut(s)	900
BssECI	CCNNGG	3 cut(s)	58, 572, 686
BssMI	GATC	5 cut(s)	208, 228, 493, 670, 844
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	118, 757
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	4 cut(s)	176, 540, 609, 720
BstF5I	GGATG	2 cut(s)	586, 858
BstFNI	CGCG	2 cut(s)	51, 236
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	51, 175
BstKTI	GATC	5 cut(s)	211, 231, 496, 673, 847
BstMAI	GTCTC	2 cut(s)	275, 849
BstMBI	GATC	5 cut(s)	208, 228, 493, 670, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 688
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	3 cut(s)	591, 636, 666
BstSNI	TACGTA	1 cut(s)	305
BstUI	CGCG	2 cut(s)	51, 236
BstV1I	GCAGC	3 cut(s)	577, 605, 857
BstX2I	RGATCY	2 cut(s)	208, 670
BstYI	RGATCY	2 cut(s)	208, 670
BsuRI	GGCC	1 cut(s)	691
BtsCI	GGATG	2 cut(s)	586, 858
BveI	ACCTGC	2 cut(s)	264, 489
Cac8I	GCNNGC	1 cut(s)	693
CfoI	GCGC	2 cut(s)	51, 175
Cfr10I	RCCGGY	1 cut(s)	900
Cfr13I	GGNCC	5 cut(s)	55, 286, 434, 569, 749
CseI	GACGC	2 cut(s)	242, 367
Csp6I	GTAC	4 cut(s)	69, 643, 884, 904
CspAI	ACCGGT	1 cut(s)	900
CviAII	CATG	2 cut(s)	277, 848
CviQI	GTAC	4 cut(s)	69, 643, 884, 904
DdeI	CTNAG	4 cut(s)	176, 540, 609, 720
DpnI	GATC	5 cut(s)	210, 230, 495, 672, 846
DpnII	GATC	5 cut(s)	208, 228, 493, 670, 844
Eco105I	TACGTA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	691
Eco47I	GGWCC	5 cut(s)	55, 286, 434, 569, 749
Eco57I	CTGAAG	2 cut(s)	65, 711
EcoO109I	RGGNCCY	3 cut(s)	55, 434, 749
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	686
ErhI	CCWWGG	1 cut(s)	686
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	2 cut(s)	280, 851
FatI	CATG	2 cut(s)	276, 847
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	591, 594, 871
FokI	GGATG	2 cut(s)	593, 845
Fsp4HI	GCNGC	3 cut(s)	591, 594, 871
GlaI	GCGC	2 cut(s)	50, 174
GluI	GCNGC	3 cut(s)	591, 594, 871
GsaI	CCCAGC	1 cut(s)	877
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	691
HapII	CCGG	1 cut(s)	901
HgaI	GACGC	2 cut(s)	242, 367
HhaI	GCGC	2 cut(s)	51, 175
Hin1II	CATG	2 cut(s)	280, 851
Hin6I	GCGC	2 cut(s)	49, 173
HinP1I	GCGC	2 cut(s)	49, 173
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	5 cut(s)	14, 78, 133, 487, 707
HpaII	CCGG	1 cut(s)	901
HphI	GGTGA	5 cut(s)	74, 172, 318, 756, 889
Hpy166II	GTNNAC	2 cut(s)	85, 504
Hpy188I	TCNGA	6 cut(s)	45, 354, 730, 832, 854, 863
Hpy188III	TCNNGA	3 cut(s)	127, 491, 674
Hpy8I	GTNNAC	2 cut(s)	85, 504
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	59, 149, 697, 806
HpyCH4III	ACNGT	2 cut(s)	118, 757
HpyCH4IV	ACGT	2 cut(s)	304, 799
HpyCH4V	TGCA	7 cut(s)	32, 259, 400, 458, 593, 638, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 688
HpyF3I	CTNAG	4 cut(s)	176, 540, 609, 720
HpySE526I	ACGT	2 cut(s)	304, 799
Hsp92II	CATG	2 cut(s)	280, 851
HspAI	GCGC	2 cut(s)	49, 173
KpnI	GGTACC	2 cut(s)	72, 907
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	5 cut(s)	208, 228, 493, 670, 844
LmnI	GCTCC	3 cut(s)	199, 661, 700
Lsp1109I	GCAGC	3 cut(s)	577, 605, 857
LweI	GCATC	2 cut(s)	268, 780
MaeII	ACGT	2 cut(s)	304, 799
MaeIII	GTNAC	4 cut(s)	166, 305, 380, 762
MalI	GATC	5 cut(s)	210, 230, 495, 672, 846
MboI	GATC	5 cut(s)	208, 228, 493, 670, 844
MboII	GAAGA	2 cut(s)	34, 142
MflI	RGATCY	2 cut(s)	208, 670
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	1 cut(s)	715
MluI	ACGCGT	1 cut(s)	234
MlyI	GAGTC	3 cut(s)	87, 496, 716
MmeI	TCCRAC	2 cut(s)	832, 886
MnlI	CCTC	4 cut(s)	46, 68, 739, 777
MseI	TTAA	2 cut(s)	186, 450
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	901
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	2 cut(s)	51, 236
MwoI	GCNNNNNNNGC	2 cut(s)	199, 688
NdeII	GATC	5 cut(s)	208, 228, 493, 670, 844
NlaIII	CATG	2 cut(s)	280, 851
NlaIV	GGNNCC	4 cut(s)	70, 556, 750, 905
NmuCI	GTSAC	2 cut(s)	380, 762
PceI	AGGCCT	1 cut(s)	691
PfeI	GAWTC	2 cut(s)	14, 133
PinAI	ACCGGT	1 cut(s)	900
PkrI	GCNGC	3 cut(s)	592, 595, 872
PleI	GAGTC	3 cut(s)	86, 495, 715
PpsI	GAGTC	3 cut(s)	86, 495, 715
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	3 cut(s)	55, 434, 749
Psp5II	RGGWCCY	3 cut(s)	55, 434, 749
Psp6I	CCWGG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	4 cut(s)	70, 556, 750, 905
PspPI	GGNCC	5 cut(s)	55, 286, 434, 569, 749
PspPPI	RGGWCCY	3 cut(s)	55, 434, 749
PstI	CTGCAG	2 cut(s)	595, 640
PsuI	RGATCY	2 cut(s)	208, 670
RsaI	GTAC	4 cut(s)	70, 644, 885, 905
RsaNI	GTAC	4 cut(s)	69, 643, 884, 904
SaqAI	TTAA	2 cut(s)	186, 450
SatI	GCNGC	3 cut(s)	591, 594, 871
Sau3AI	GATC	5 cut(s)	208, 228, 493, 670, 844
Sau96I	GGNCC	5 cut(s)	55, 286, 434, 569, 749
SchI	GAGTC	3 cut(s)	87, 496, 716
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	2 cut(s)	268, 780
SfcI	CTRYAG	3 cut(s)	591, 636, 666
SinI	GGWCC	5 cut(s)	55, 286, 434, 569, 749
SnaBI	TACGTA	1 cut(s)	305
Sse9I	AATT	1 cut(s)	715
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	217
StuI	AGGCCT	1 cut(s)	691
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	2 cut(s)	118, 757
TaiI	ACGT	2 cut(s)	307, 802
TaqI	TCGA	4 cut(s)	12, 20, 231, 523
TasI	AATT	1 cut(s)	715
TatI	WGTACW	1 cut(s)	883
TfiI	GAWTC	2 cut(s)	14, 133
Tru1I	TTAA	2 cut(s)	186, 450
Tru9I	TTAA	2 cut(s)	186, 450
TseFI	GTSAC	2 cut(s)	380, 762
TseI	GCWGC	3 cut(s)	590, 593, 870
Tsp45I	GTSAC	2 cut(s)	380, 762
TspDTI	ATGAA	4 cut(s)	6, 265, 425, 911
TspGWI	ACGGA	2 cut(s)	90, 299
VpaK11BI	GGWCC	5 cut(s)	55, 286, 434, 569, 749
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.