Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007587

Physical Location & Seq

Genomic Coordinates Reverse (-)

66066386 .. 66068671

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGATCTAAAGGGTCTTGTTTTCTTGGCTGTGCTTACTTTGATTGATTGTTTTCCTGACAGTTGCTATCAAGAAGATTCGGGTTTGGAAGCAAAAACGAGATGTAACAGCGCTTTTAGAGAGATTAAACTGCTAAAGGAGCTGAAAGATCCGAATATTATTGAGTTGATCGACGCGTTCCCCCATAAAGGAAACCTGCATCTTGTGTTTGAGTTCATGGAGATGGACCTTGAAGCTGTTATACGTAACCATAATAGAGTCCTTTCACCAGCGGATATAAAGTCGTATATTCAGATGACGCTAAAAGGACTTGCTTTTTGTCGCAAGAAATGGGTTTTGCACAGGGATATGAAGCCCAACAACTTGTTGATAGGACCTAATGGACAGCTTAAACTTGCAGATTTTGGTTTAGCACGAGTATTTGGGAGTCCAGATCGCAGGTTCACTCATCAGGTCTTTGCTCGATGGTATAGAGCACCTGAGCTGTTATTTGGCACCAAACAATATGGACCTGGGGTGGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTCCTACGACAACCATTTCTGCAGGAAAGATTTTTTGCGGCTTTTGGGACTTCAACACCTTCTCAATGGCCTGATATGGTATACCTTCCTGACTATGTGGAATACCAGTATTCTCCACCATCTGCTTTGCGTAAAAGGTTTGCAATGGCTAGTGATGATGCCTTCGATTTGGTATCAAAGATGTTTACTTATGACCCAAAAACTAGCATATCTGTGCAGCAGGCACTAGAGCACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

264

Amino Acids

30.37

Weight (kDa)

7.65

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	32 - 263	2.3e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 186	2.1e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18040 AT1G73690
fragaria_vesca	FvH4_5g16910 FvH4_5g16910 FvH4_5g16910 FvH4_5g16910
malus_domestica	MD06G1222900.v1.1 MD14G1232000.v1.1
prunus_persica	Prupe.5G227900_v2.0.a1
pyrus_communis	pycom14g19340
rosa_chinensis	RchiOBHm_Chr7g0179111 RchiOBHm_Chr7g0179131
rosa_laevigata	RLG00000005384
rosa_multiflora	Rmu_sc0000888.1_g000018
rosa_roxburghii	Rroxscaffold_3G00274350 Rroxscaffold_3G00274380
rosa_rugosa	Rorug06G0421000 Rorug06G0421000 Rorug06G0421100
rosa_samantha	Rh7AG020400 Rh7BG020100 Rh7CG021500 Rh7DG021000
rosa_wichuraiana	Rw7G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	204, 429
AccB1I	GGYRCC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	272, 593
AclWI	GGATC	2 cut(s)	12, 143
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	233, 609
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	5 cut(s)	142, 236, 388, 484, 553
AluI	AGCT	5 cut(s)	142, 236, 388, 484, 553
Alw21I	GWGCWC	2 cut(s)	478, 789
AlwI	GGATC	2 cut(s)	12, 143
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	3 cut(s)	530, 533, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	3 cut(s)	226, 374, 509
AsuHPI	GGTGA	1 cut(s)	258
AvaII	GGWCC	3 cut(s)	226, 374, 509
BanI	GGYRCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BauI	CACGAG	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	478, 789
BbvI	GCAGC	3 cut(s)	517, 545, 784
BccI	CCATC	3 cut(s)	217, 459, 682
BciT130I	CCWGG	1 cut(s)	513
BfaI	CTAG	3 cut(s)	705, 759, 782
BfmI	CTRYAG	2 cut(s)	531, 575
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	2 cut(s)	204, 429
BisI	GCNGC	4 cut(s)	531, 534, 594, 773
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	4 cut(s)	532, 535, 595, 774
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	3 cut(s)	226, 374, 509
BmgT120I	GGNCC	3 cut(s)	226, 374, 509
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	208, 703
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	471, 540
BseNI	ACTGG	1 cut(s)	661
BseXI	GCAGC	3 cut(s)	517, 545, 784
BsgI	GTGCAG	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	625
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	478, 789
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	478, 789
Bsp143I	GATC	4 cut(s)	4, 148, 168, 433
Bsp1720I	GCTNAGC	1 cut(s)	549
BspACI	CCGC	2 cut(s)	272, 593
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	472, 541
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	496
BspMAI	CTGCAG	2 cut(s)	535, 579
BspMI	ACCTGC	2 cut(s)	204, 429
BspPI	GGATC	2 cut(s)	12, 143
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	4 cut(s)	4, 148, 168, 433
BssNAI	GTATAC	1 cut(s)	637
BssSI	CACGAG	1 cut(s)	414
Bst1107I	GTATAC	1 cut(s)	637
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	777
BstDEI	CTNAG	2 cut(s)	480, 549
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	7, 151, 171, 436
BstMBI	GATC	4 cut(s)	4, 148, 168, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	531, 575
BstSNI	TACGTA	1 cut(s)	245
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	517, 545, 784
BstX2I	RGATCY	2 cut(s)	4, 148
BstYI	RGATCY	2 cut(s)	4, 148
BstZ17I	GTATAC	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	526
BveI	ACCTGC	2 cut(s)	204, 429
Cac8I	GCNNGC	1 cut(s)	777
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	3 cut(s)	226, 374, 509
CseI	GACGC	2 cut(s)	182, 307
CviAII	CATG	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	480, 549
DpnI	GATC	4 cut(s)	6, 150, 170, 435
DpnII	GATC	4 cut(s)	4, 148, 168, 433
Eco105I	TACGTA	1 cut(s)	245
Eco47I	GGWCC	3 cut(s)	226, 374, 509
Eco47III	AGCGCT	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	511
FaeI	CATG	1 cut(s)	220
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	531, 534, 594, 773
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	4 cut(s)	531, 534, 594, 773
FspBI	CTAG	3 cut(s)	705, 759, 782
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	531, 534, 594, 773
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	625
HgaI	GACGC	2 cut(s)	182, 307
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	3 cut(s)	77, 258, 427
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	444, 637, 741
Hpy188I	TCNGA	2 cut(s)	153, 294
Hpy188III	TCNNGA	4 cut(s)	56, 71, 431, 644
Hpy8I	GTNNAC	3 cut(s)	444, 637, 741
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	624, 650, 727
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	7 cut(s)	199, 340, 398, 533, 577, 698, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	480, 549
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	4, 148, 168, 433
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	3 cut(s)	517, 545, 784
LweI	GCATC	2 cut(s)	208, 703
MaeI	CTAG	3 cut(s)	705, 759, 782
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	104, 245
MalI	GATC	4 cut(s)	6, 150, 170, 435
MboI	GATC	4 cut(s)	4, 148, 168, 433
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	2 cut(s)	4, 148
MhlI	GDGCHC	2 cut(s)	478, 789
MluI	ACGCGT	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	267, 436
MseI	TTAA	2 cut(s)	126, 390
MslI	CAYNNNNRTG	2 cut(s)	221, 767
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	4 cut(s)	4, 148, 168, 433
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	532, 535, 595, 774
PleI	GAGTC	2 cut(s)	266, 435
PpsI	GAGTC	2 cut(s)	266, 435
Ppu21I	YACGTR	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	3 cut(s)	226, 374, 509
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	2 cut(s)	535, 579
PsuI	RGATCY	2 cut(s)	4, 148
RseI	CAYNNNNRTG	2 cut(s)	221, 767
SaqAI	TTAA	2 cut(s)	126, 390
SatI	GCNGC	4 cut(s)	531, 534, 594, 773
Sau3AI	GATC	4 cut(s)	4, 148, 168, 433
Sau96I	GGNCC	3 cut(s)	226, 374, 509
SchI	GAGTC	2 cut(s)	267, 436
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	478, 789
SfaNI	GCATC	2 cut(s)	208, 703
SfcI	CTRYAG	2 cut(s)	531, 575
SinI	GGWCC	3 cut(s)	226, 374, 509
SmiMI	CAYNNNNRTG	2 cut(s)	221, 767
SnaBI	TACGTA	1 cut(s)	245
SsiI	CCGC	2 cut(s)	272, 593
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	3 cut(s)	705, 759, 782
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	171, 463, 720
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	126, 390
Tru9I	TTAA	2 cut(s)	126, 390
TseI	GCWGC	3 cut(s)	530, 533, 772
TspDTI	ATGAA	2 cut(s)	205, 365
VpaK11BI	GGWCC	3 cut(s)	226, 374, 509
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	3 cut(s)	705, 759, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.