AT1G18300

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011991
Physical Location & Seq
Forward (+)
6299669 .. 6301139
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18300.1

Sequence Viewer

Length: 624 bp
ATGACAGGGTTCTCTGTGTCTCTTTTTGTGTCAAACTTGTCAAATGTGGCCTCGTATTTGTCGCCCATCTTCGAGAACATCCCCTCCACCAAGGTTGTTCCCGCACAGATCGAGAAAGTTGTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATCACGCTGGCTATCGTCAAGTCGTCGGATGTGTACCGTATAGATACAAGAAACAAGAAGTCAATGGAGTTGAAACCCAAGTAATCCAAGTTCTTCTTGTCAGTGCTCAAAAGGGCAAAGGAATGTTATTTCCAAAAGGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCTGCTTTGAGAGAGACGATCGAAGAAGCGGGTGTAACAGGAGAGCTCGAAGAAAAGCTTGGGAAATGGCAATACAAAAGCAAAAGACATAGCATAATTCACGATGGGTATATGTTTGCTTTGCTTGTCAGTCAAGAGTTCGAGCGATGGCCTGAGGCGGAAATGAGACAACGCAGATGGGTAAGTTTGGATGAAGCAAGAGAAGTATGTCAGAATTGGTGGATGAGAGAAGCTCTTGAAGCATTCATTAACCTGAAATGTCTAGCTGACGATGATGAAAGTGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

207

Amino Acids

23.7

Weight (kDa)

5.27

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 81 - 192 5.6e-15 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 3 cut(s) 102, 362, 491
AfaI GTAC 2 cut(s) 139, 198
AfiI CCNNNNNNNGG 1 cut(s) 302
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 236, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 335, 379, 391, 566, 599
AluI AGCT 5 cut(s) 335, 379, 391, 566, 599
Alw21I GWGCWC 2 cut(s) 271, 381
Alw26I GTCTC 6 cut(s) 24, 127, 136, 305, 341, 493
AoxI GGCC 2 cut(s) 48, 482
ApeKI GCWGC 2 cut(s) 154, 335
AsiGI ACCGGT 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 486
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 271, 381
BbvI GCAGC 2 cut(s) 166, 322
BccI CCATC 4 cut(s) 74, 431, 474, 504
BcoDI GTCTC 6 cut(s) 24, 127, 136, 305, 341, 493
BfaI CTAG 1 cut(s) 596
BisI GCNGC 2 cut(s) 155, 336
BlsI GCNGC 2 cut(s) 156, 337
BplI GAGNNNNNCTC 2 cut(s) 550, 582
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 140
Bse21I CCTNAGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 5 cut(s) 78, 197, 322, 529, 561
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 166, 322
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 2 cut(s) 145, 354
BshFI GGCC 2 cut(s) 50, 484
BshTI ACCGGT 1 cut(s) 140
BsiEI CGRYCG 2 cut(s) 145, 354
BsiHKAI GWGCWC 2 cut(s) 271, 381
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 6 cut(s) 24, 127, 136, 305, 341, 493
BsmBI CGTCTC 2 cut(s) 305, 341
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 2 cut(s) 50, 484
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 271, 381
Bsp143I GATC 3 cut(s) 108, 163, 351
Bsp68I TCGCGA 1 cut(s) 147
BspACI CCGC 3 cut(s) 102, 362, 491
BspANI GGCC 2 cut(s) 50, 484
BspCNI CTCAG 1 cut(s) 478
BspFNI CGCG 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 108, 163, 351
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 5 cut(s) 78, 197, 322, 529, 561
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 3 cut(s) 111, 166, 354
BstMAI GTCTC 6 cut(s) 24, 127, 136, 305, 341, 493
BstMBI GATC 3 cut(s) 108, 163, 351
BstMCI CGRYCG 2 cut(s) 145, 354
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 166, 322
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 2 cut(s) 50, 484
BtgZI GCGATG 1 cut(s) 493
BtsCI GGATG 5 cut(s) 78, 197, 322, 529, 561
BtsIMutI CAGTG 1 cut(s) 271
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 140
Csp6I GTAC 2 cut(s) 138, 197
CspAI ACCGGT 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviJI RGCY 8 cut(s) 50, 174, 335, 379, 391, 484, 566, 599
CviKI_1 RGCY 8 cut(s) 50, 174, 335, 379, 391, 484, 566, 599
CviQI GTAC 2 cut(s) 138, 197
DdeI CTNAG 1 cut(s) 486
DpnI GATC 3 cut(s) 110, 165, 353
DpnII GATC 3 cut(s) 108, 163, 351
EciI GGCGGA 1 cut(s) 506
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 379
Eco81I CCTNAGG 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 2 cut(s) 305, 341
FaiI YATR 6 cut(s) 204, 423, 428, 444, 446, 541
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 375, 407
FauI CCCGC 2 cut(s) 109, 355
Fnu4HI GCNGC 2 cut(s) 155, 336
FokI GGATG 5 cut(s) 65, 204, 329, 536, 568
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 2 cut(s) 155, 336
FspBI CTAG 1 cut(s) 596
GluI GCNGC 2 cut(s) 155, 336
HaeIII GGCC 2 cut(s) 50, 484
HapII CCGG 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 191, 546
Hpy188III TCNNGA 6 cut(s) 73, 112, 146, 434, 467, 569
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 1 cut(s) 486
Kzo9I GATC 3 cut(s) 108, 163, 351
LpnPI CCDG 5 cut(s) 154, 156, 357, 498, 599
Lsp1109I GCAGC 2 cut(s) 166, 322
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 158, 367
MalI GATC 3 cut(s) 110, 165, 353
MboI GATC 3 cut(s) 108, 163, 351
MboII GAAGA 4 cut(s) 61, 248, 368, 395
MhlI GDGCHC 2 cut(s) 271, 381
MluCI AATT 2 cut(s) 429, 547
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 5 cut(s) 61, 94, 296, 322, 481
MseI TTAA 1 cut(s) 582
MspI CCGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 575
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeII GATC 3 cut(s) 108, 163, 351
NruI TCGCGA 1 cut(s) 147
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 320
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 2 cut(s) 156, 337
Ple19I CGATCG 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 381
PsrI GAACNNNNNNTAC 2 cut(s) 237, 269
PvuI CGATCG 1 cut(s) 354
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 2 cut(s) 139, 198
RsaNI GTAC 2 cut(s) 138, 197
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 2 cut(s) 155, 336
Sau3AI GATC 3 cut(s) 108, 163, 351
SduI GDGCHC 2 cut(s) 271, 381
SetI ASST 8 cut(s) 96, 307, 337, 381, 393, 568, 588, 601
Sse9I AATT 2 cut(s) 429, 547
SsiI CCGC 3 cut(s) 102, 362, 491
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 381
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 72, 111, 354, 381, 474
TasI AATT 2 cut(s) 429, 547
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 154, 335
TspDTI ATGAA 4 cut(s) 333, 540, 568, 624
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.