MD06G1232000.v1.1

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011991
Physical Location & Seq
Reverse (-)
36288690 .. 36290610
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1232000.v1.1.491

Sequence Viewer

Length: 627 bp
ATGGGTCTCTTTCTCTCAAAAAGTATTGTGAATTACATTTGCAATTCTTCTAATTCTCCCGTTTTCTCCAAGAAAAATGGTGGAGAATTCATCCCCATGCAAATTGAGAACATGGTTTCTTTAGTTTCCCGGACCGGAAGACAATTCCAGCGCTATGAAAAAGGTTGCCGCCAAGTTGTAGGATGCATACCATACAGATACCGGAAAACCGAAAAAACTTCATCTGATGAGGAATTGGAAGTTCTTGTGATTAGTTCACAGAAGGGGAAAGGAATGTTGTTCCCAAAGGGAGGTTGGGAAATGGATGAGTCGATTGAAGAGGCGGCAAAAAGAGAGACGCTGGAGGAAGCCGGTGTGATTGGCCATCTTGAAACTAGATTGGGAATGTGGCGTTACAAGAGCAAAAGCCAGGGCGCATTTCATGAGGGGTACATGTTCCCTTTGCTTGTCCAGCAGCAGTTGGAACTTTGGCCCGAGAAAAGTTCCCGCAAGCGTGAATGGATGACAGTCGCTGAAGCGAGAGAAGCATGTCAAAATTGGTGGATGAAGGAAGCTTTGGAGAAATTAGTTTGTCGACAAATGCAGCCCCAACCGAAAGGAGAGGAAGAAGATACAACTTGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

209

Amino Acids

24.05

Weight (kDa)

7.56

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 76 - 188 1e-13 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 574
AciI CCGC 3 cut(s) 169, 323, 487
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 2 cut(s) 431, 622
AfeI AGCGCT 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 2 cut(s) 317, 371
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw26I GTCTC 2 cut(s) 11, 329
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 473
Aor51HI AGCGCT 1 cut(s) 152
AoxI GGCC 2 cut(s) 361, 470
ApeKI GCWGC 2 cut(s) 454, 583
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 2 cut(s) 153, 416
AspS9I GGNCC 2 cut(s) 132, 471
AsuC2I CCSGG 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 466, 595
BccI CCATC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 11, 329
BfaI CTAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 154
BisI GCNGC 4 cut(s) 169, 324, 455, 584
BlsI GCNGC 4 cut(s) 170, 325, 456, 585
Bme1390I CCNGG 2 cut(s) 130, 410
Bme18I GGWCC 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 132, 471
BmrFI CCNGG 2 cut(s) 130, 410
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 409
BsaWI WCCGGW 2 cut(s) 134, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 350
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 5 cut(s) 90, 188, 310, 507, 549
BseLI CCNNNNNNNGG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 466, 595
BshFI GGCC 2 cut(s) 363, 472
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 4 cut(s) 130, 135, 202, 351
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 11, 329
BsmBI CGTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 363, 472
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 620
BspACI CCGC 3 cut(s) 169, 323, 487
BspANI GGCC 2 cut(s) 363, 472
BspHI TCATGA 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 491
BstF5I GGATG 5 cut(s) 90, 188, 310, 507, 549
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 416
BstMAI GTCTC 2 cut(s) 11, 329
BstMWI GCNNNNNNNGC 2 cut(s) 451, 524
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 436, 531
BstSCI CCNGG 2 cut(s) 128, 408
BstV1I GCAGC 2 cut(s) 466, 595
BstV2I GAAGAC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 363, 472
BtsCI GGATG 5 cut(s) 90, 188, 310, 507, 549
Cac8I GCNNGC 1 cut(s) 491
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 421
CfoI GCGC 2 cut(s) 153, 416
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 132, 471
CpoI CGGWCCG 1 cut(s) 132
CseI GACGC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 430, 621
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CspI CGGWCCG 1 cut(s) 132
CviAII CATG 5 cut(s) 97, 112, 422, 433, 528
CviJI RGCY 6 cut(s) 350, 363, 408, 472, 554, 586
CviKI_1 RGCY 6 cut(s) 350, 363, 408, 472, 554, 586
CviQI GTAC 2 cut(s) 430, 621
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 132
Eco47III AGCGCT 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 5 cut(s) 100, 115, 425, 436, 531
FaiI YATR 9 cut(s) 98, 113, 156, 188, 193, 423, 434, 529, 625
FatI CATG 5 cut(s) 96, 111, 421, 432, 527
FauI CCCGC 1 cut(s) 494
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 4 cut(s) 169, 324, 455, 584
FokI GGATG 5 cut(s) 77, 195, 317, 514, 556
Fsp4HI GCNGC 4 cut(s) 169, 324, 455, 584
FspBI CTAG 1 cut(s) 375
GlaI GCGC 2 cut(s) 152, 415
GluI GCNGC 4 cut(s) 169, 324, 455, 584
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 2 cut(s) 363, 472
HapII CCGG 4 cut(s) 130, 135, 202, 351
HgaI GACGC 1 cut(s) 346
HhaI GCGC 2 cut(s) 153, 416
Hin1II CATG 5 cut(s) 100, 115, 425, 436, 531
Hin6I GCGC 2 cut(s) 151, 414
HinP1I GCGC 2 cut(s) 151, 414
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 1 cut(s) 308
HpaII CCGG 4 cut(s) 130, 135, 202, 351
Hpy166II GTNNAC 2 cut(s) 257, 575
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 368, 422
Hpy8I GTNNAC 2 cut(s) 257, 575
HpyAV CCTTC 2 cut(s) 256, 541
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4V TGCA 4 cut(s) 42, 100, 186, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 524
Hsp92II CATG 5 cut(s) 100, 115, 425, 436, 531
HspAI GCGC 2 cut(s) 151, 414
LpnPI CCDG 9 cut(s) 143, 148, 161, 215, 326, 364, 395, 422, 464
Lsp1109I GCAGC 2 cut(s) 466, 595
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 392
MboII GAAGA 5 cut(s) 39, 150, 329, 617, 620
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 9 cut(s) 31, 43, 52, 86, 102, 143, 233, 535, 563
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 6 cut(s) 223, 284, 313, 337, 418, 595
Mox20I TGGCCA 1 cut(s) 363
Mph1103I ATGCAT 1 cut(s) 188
MscI TGGCCA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 363
MspI CCGG 4 cut(s) 130, 135, 202, 351
MspR9I CCNGG 2 cut(s) 130, 410
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 451, 524
NciI CCSGG 1 cut(s) 130
NlaIII CATG 5 cut(s) 100, 115, 425, 436, 531
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 2 cut(s) 436, 531
PagI TCATGA 1 cut(s) 421
PciI ACATGT 1 cut(s) 432
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 4 cut(s) 170, 325, 456, 585
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspPI GGNCC 2 cut(s) 132, 471
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 431, 622
RsaNI GTAC 2 cut(s) 430, 621
RseI CAYNNNNRTG 1 cut(s) 95
Rsr2I CGGWCCG 1 cut(s) 132
RsrII CGGWCCG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 573
SatI GCNGC 4 cut(s) 169, 324, 455, 584
Sau96I GGNCC 2 cut(s) 132, 471
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 130, 410
SetI ASST 3 cut(s) 166, 295, 556
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 9 cut(s) 31, 43, 52, 86, 102, 143, 233, 535, 563
SsiI CCGC 3 cut(s) 169, 323, 487
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 128, 408
TaaI ACNGT 1 cut(s) 508
TaqI TCGA 2 cut(s) 311, 574
TasI AATT 9 cut(s) 31, 43, 52, 86, 102, 143, 233, 535, 563
TatI WGTACW 1 cut(s) 620
TauI GCSGC 2 cut(s) 171, 326
TseI GCWGC 2 cut(s) 454, 583
TspDTI ATGAA 5 cut(s) 79, 171, 210, 410, 560
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 86
XceI RCATGY 2 cut(s) 436, 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 1 cut(s) 375
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.