AT1G73540

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011991
Physical Location & Seq
Reverse (-)
27645552 .. 27646743
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73540.1

Sequence Viewer

Length: 597 bp
ATGATTTCTCTATTCATCTCAAACTTTTCAAACTTATCAAACTTATCTCCGACCTTTGATAACATGAACATGAACATCCCATCGAAGAAGATCGTACCGGTACCGACACCGAGTGAGAAAGTTGTCTCTTTGGTATCTCGAACCGGACGAGATCTCCAACGTTACAACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAACACGGAGGAGGAGAAATTGAAGTGCTTTTGATAAGTGCACAGAAGAAAGGGAAAGGAATGTTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAGAGACAATTGAAGAAGCTGGTGTTACGGGTCAGCTTGAAGAATCACTTGGGAAATGGCAATACAAAAGCAAAAGACATACTATGATTCATGATGGTCATATGTTTCCTTTGCTTGTTAGTCAGCAGTTTGAGATATGGCCTGAATCTGAATTCAGACAACGCAAATGGGTTTCTTTGTCTGAAGCGATTGAGTTGTGTCAGAATTCGTGGATGAGAGAAGCTTTGGAAGCTTTCATTAACCGGAAATGCCAGACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

198

Amino Acids

22.64

Weight (kDa)

8.39

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 60 - 189 8.3e-16 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 1 cut(s) 171
AclI AACGTT 1 cut(s) 160
AcsI RAATTY 2 cut(s) 485, 538
AcuI CTGAAG 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 3 cut(s) 96, 102, 201
AfiI CCNNNNNNNGG 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 97
AgsI TTSAA 4 cut(s) 30, 239, 347, 374
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 5 cut(s) 326, 353, 370, 557, 566
AluI AGCT 5 cut(s) 326, 353, 370, 557, 566
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 130, 332
Alw44I GTGCAC 1 cut(s) 255
AoxI GGCC 1 cut(s) 473
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 485, 538
AsiGI ACCGGT 1 cut(s) 97
Asp718I GGTACC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 88, 422
BcoDI GTCTC 2 cut(s) 130, 332
BglII AGATCT 1 cut(s) 151
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 102
BsaWI WCCGGW 3 cut(s) 97, 143, 576
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 97
BseGI GGATG 3 cut(s) 75, 200, 552
BseLI CCNNNNNNNGG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 240, 243
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 475
BshNI GGYRCC 1 cut(s) 100
BshTI ACCGGT 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 3 cut(s) 98, 144, 577
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 130, 332
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 90, 151
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 475
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 2 cut(s) 90, 151
BstF5I GGATG 3 cut(s) 75, 200, 552
BstKTI GATC 2 cut(s) 93, 154
BstMAI GTCTC 2 cut(s) 130, 332
BstMBI GATC 2 cut(s) 90, 151
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 3 cut(s) 75, 200, 552
CciI TCATGA 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 97
Csp6I GTAC 3 cut(s) 95, 101, 200
CspAI ACCGGT 1 cut(s) 97
CviAII CATG 3 cut(s) 64, 70, 425
CviJI RGCY 6 cut(s) 326, 353, 370, 475, 557, 566
CviKI_1 RGCY 6 cut(s) 326, 353, 370, 475, 557, 566
CviQI GTAC 3 cut(s) 95, 101, 200
DpnI GATC 2 cut(s) 92, 153
DpnII GATC 2 cut(s) 90, 151
DraIII CACNNNGTG 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 537
EcoRI GAATTC 2 cut(s) 485, 538
FaeI CATG 3 cut(s) 67, 73, 428
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 3 cut(s) 63, 69, 424
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 3 cut(s) 62, 207, 559
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 475
HapII CCGG 3 cut(s) 98, 144, 577
Hin1II CATG 3 cut(s) 67, 73, 428
HindIII AAGCTT 2 cut(s) 555, 564
HinfI GANTC 4 cut(s) 311, 377, 421, 479
HpaII CCGG 3 cut(s) 98, 144, 577
Hpy166II GTNNAC 2 cut(s) 200, 257
Hpy188I TCNGA 6 cut(s) 51, 194, 484, 491, 517, 537
Hpy188III TCNNGA 2 cut(s) 138, 425
Hpy8I GTNNAC 2 cut(s) 200, 257
Hpy99I CGWCG 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 3 cut(s) 67, 73, 428
KpnI GGTACC 1 cut(s) 104
Kzo9I GATC 2 cut(s) 90, 151
LpnPI CCDG 6 cut(s) 111, 157, 159, 339, 489, 590
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 161, 358
MalI GATC 2 cut(s) 92, 153
MboI GATC 2 cut(s) 90, 151
MboII GAAGA 6 cut(s) 97, 100, 274, 332, 359, 386
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 4 cut(s) 234, 342, 485, 538
MmeI TCCRAC 3 cut(s) 74, 172, 181
MnlI CCTC 3 cut(s) 218, 221, 287
MseI TTAA 2 cut(s) 332, 573
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 3 cut(s) 98, 144, 577
MunI CAATTG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeI CATATG 1 cut(s) 435
NdeII GATC 2 cut(s) 90, 151
NlaIII CATG 3 cut(s) 67, 73, 428
NlaIV GGNNCC 1 cut(s) 102
PagI TCATGA 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PfeI GAWTC 4 cut(s) 311, 377, 421, 479
PinAI ACCGGT 1 cut(s) 97
PkrI GCNGC 1 cut(s) 328
Psp1406I AACGTT 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 3 cut(s) 96, 102, 201
RsaNI GTAC 3 cut(s) 95, 101, 200
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 2 cut(s) 332, 573
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 2 cut(s) 90, 151
SduI GDGCHC 1 cut(s) 259
SetI ASST 8 cut(s) 56, 163, 298, 328, 355, 372, 559, 568
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 4 cut(s) 234, 342, 485, 538
SsiI CCGC 1 cut(s) 171
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 83, 139
TasI AATT 4 cut(s) 234, 342, 485, 538
TfiI GAWTC 4 cut(s) 311, 377, 421, 479
Tru1I TTAA 2 cut(s) 332, 573
Tru9I TTAA 2 cut(s) 332, 573
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 6 cut(s) 4, 80, 86, 324, 413, 559
TspGWI ACGGA 1 cut(s) 237
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 2 cut(s) 485, 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.