Prupe.5G235900_v2.0.a1

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011991
Physical Location & Seq
Reverse (-)
17874255 .. 17875678
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G235900.1

Sequence Viewer

Length: 621 bp
ATGGGTCTCTTTCTCTCAAGAAATATTGCAGATTTTGTTTTCTCTTCTCCTCTTTTCTCTAAGAAAAATGGTGGGAATTTCATTCCCATGCAAATTGAGGACGTGGTTTCCTTGGTGTCCCGGACGGGAAGGCATATGCAGCGCTATGATGAAGGTTATCGCCAAGTTGTAGGATGCATACCATACAGATTTAGGAAAACCGAACAATCTTCATCTCTTGAGGAATTAGAAGTTCTTGTGATTAGTTCACAGAAGGGTCAAGGAATGTTGTTCCCAAAGGGAGGTTGGGAAATTGATGAGTCTATCGAAGAAGCGGCTAAAAGAGAAACGCTAGAGGAAGCCGGTGTGGTTGGCCATCTTGGAAGTCGATTGGGTATGTGGCGTTATAAGAGCAAAAGCCATGGCTTAATTCATGAGGGGTACATGTTCCCTTTGCTCGTCCAGCAGCAACTGGACTTTTGGCCCGAGCAAAGTGCCAGAAAACGACAATGGATGTCTGTTGCCGAAGCTAGAGAAGCATGTCAAAATTGGTGGATGAGGGAAGCTTTGGAGAAGTTAGTTTGTCGACAAATGCACCCCCAACAGAAAGAAGAAGCAGAAGAAGAAACAAAATGCACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

207

Amino Acids

23.89

Weight (kDa)

6.25

Isoelectric Point (pI)

63.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccI GTMKAC 1 cut(s) 565
AciI CCGC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 422
AfeI AGCGCT 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 423
AjiI CACGTC 1 cut(s) 103
AluBI AGCT 2 cut(s) 509, 545
AluI AGCT 2 cut(s) 509, 545
Alw26I GTCTC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 464
Aor51HI AGCGCT 1 cut(s) 143
AoxI GGCC 2 cut(s) 352, 461
ApeKI GCWGC 2 cut(s) 139, 445
ApoI RAATTY 1 cut(s) 76
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 464
BalI TGGCCA 1 cut(s) 354
BbvI GCAGC 2 cut(s) 151, 457
BccI CCATC 1 cut(s) 363
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 332, 510
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 3 cut(s) 140, 315, 446
BlsI GCNGC 3 cut(s) 141, 316, 447
Bme1390I CCNGG 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 111, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 111, 400
BseGI GGATG 3 cut(s) 179, 498, 540
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 151, 457
BshFI GGCC 2 cut(s) 354, 463
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 121, 342
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 2 cut(s) 354, 463
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 464
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 1 cut(s) 314
BspANI GGCC 2 cut(s) 354, 463
BspHI TCATGA 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 111, 400
BssT1I CCWWGG 2 cut(s) 111, 400
Bst6I CTCTTC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 618
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 3 cut(s) 179, 498, 540
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 139, 442, 515
BstNSI RCATGY 2 cut(s) 427, 522
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 151, 457
BsuRI GGCC 2 cut(s) 354, 463
BtgI CCRYGG 1 cut(s) 400
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 179, 498, 540
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 412
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 512, 547
CviAII CATG 5 cut(s) 88, 401, 413, 424, 519
CviJI RGCY 8 cut(s) 317, 341, 354, 399, 405, 463, 509, 545
CviKI_1 RGCY 8 cut(s) 317, 341, 354, 399, 405, 463, 509, 545
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 111, 400
Eco31I GGTCTC 1 cut(s) 11
Eco47III AGCGCT 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 111, 400
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 111, 400
FaeI CATG 5 cut(s) 91, 404, 416, 427, 522
FaqI GGGAC 1 cut(s) 103
FatI CATG 5 cut(s) 87, 400, 412, 423, 518
FauNDI CATATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 3 cut(s) 140, 315, 446
FokI GGATG 3 cut(s) 186, 505, 547
Fsp4HI GCNGC 3 cut(s) 140, 315, 446
FspBI CTAG 2 cut(s) 332, 510
GlaI GCGC 1 cut(s) 143
GluI GCNGC 3 cut(s) 140, 315, 446
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 2 cut(s) 354, 463
HapII CCGG 2 cut(s) 121, 342
HhaI GCGC 1 cut(s) 144
Hin1II CATG 5 cut(s) 91, 404, 416, 427, 522
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 1 cut(s) 299
HpaII CCGG 2 cut(s) 121, 342
Hpy166II GTNNAC 2 cut(s) 248, 566
Hpy188III TCNNGA 3 cut(s) 18, 218, 413
Hpy8I GTNNAC 2 cut(s) 248, 566
HpyAV CCTTC 3 cut(s) 123, 146, 247
HpyCH4IV ACGT 2 cut(s) 102, 617
HpyCH4V TGCA 6 cut(s) 29, 91, 139, 177, 574, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 442, 515
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 2 cut(s) 102, 617
Hsp92II CATG 5 cut(s) 91, 404, 416, 427, 522
HspAI GCGC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 134, 355, 437, 455, 490
Lsp1109I GCAGC 2 cut(s) 151, 457
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 332, 510
MaeII ACGT 2 cut(s) 102, 617
MboII GAAGA 6 cut(s) 36, 201, 320, 602, 611, 614
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 6 cut(s) 76, 93, 224, 291, 408, 526
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 7 cut(s) 60, 91, 214, 275, 328, 409, 531
Mox20I TGGCCA 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 179
MscI TGGCCA 1 cut(s) 354
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 2 cut(s) 121, 342
MspR9I CCNGG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 139, 442, 515
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 135
NlaIII CATG 5 cut(s) 91, 404, 416, 427, 522
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 2 cut(s) 427, 522
PagI TCATGA 1 cut(s) 412
PciI ACATGT 1 cut(s) 423
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 3 cut(s) 141, 316, 447
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 618
PscI ACATGT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 387
PspPI GGNCC 1 cut(s) 462
PstNI CAGNNNCTG 1 cut(s) 451
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 86
SalI GTCGAC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 3 cut(s) 140, 315, 446
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 121
SetI ASST 6 cut(s) 105, 157, 286, 511, 547, 620
SfaNI GCATC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 16, 218
SmoI CTYRAG 2 cut(s) 16, 218
Sse9I AATT 6 cut(s) 76, 93, 224, 291, 408, 526
SsiI CCGC 1 cut(s) 314
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 332, 510
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 2 cut(s) 111, 400
TaiI ACGT 2 cut(s) 105, 620
TaqI TCGA 3 cut(s) 306, 367, 565
TasI AATT 6 cut(s) 76, 93, 224, 291, 408, 526
TauI GCSGC 1 cut(s) 317
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseI GCWGC 2 cut(s) 139, 445
TspDTI ATGAA 4 cut(s) 70, 165, 201, 401
XapI RAATTY 1 cut(s) 76
XceI RCATGY 2 cut(s) 427, 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 565
XspI CTAG 2 cut(s) 332, 510
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.